Array 1 977-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJB01000210.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 976 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 915 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 854 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 793 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 732 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 671 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 610 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 548 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 487 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 426 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 365 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 304 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 243 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 182 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 121 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : GACGCCCCGAATGTGTTTGCCTCGCCCGCTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32294-30207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJB01000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32293 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 32232 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 32171 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 32110 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 32049 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 31988 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 31927 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 31866 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 31805 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 31744 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 31683 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 31622 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 31561 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 31499 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 31438 29 96.6 32 ..........T.................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31377 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31316 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31255 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31194 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31133 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31072 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31011 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30950 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30888 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30785 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30724 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30663 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30602 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30541 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30480 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30419 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30358 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30297 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30236 29 96.6 0 A............................ | A [30209] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2093-1454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJB01000185.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2092 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2031 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1969 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1908 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1847 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1786 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1725 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1664 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1603 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1542 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1481 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTATGCGGTTGTTTATCGG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //