Array 1 20673-19405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000011.1 Anabaena sp. FACHB-83 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 20672 37 100.0 37 ..................................... TTCCATAGCTACTTGTACCTTAATCGGTTCGGTTCCT 20598 37 100.0 39 ..................................... GCAATGTCCTCAGCGACGCTTGCAACTGTTTTCCTTGCT 20522 37 100.0 34 ..................................... TGCAACTGCATTAATGCCATCCAAGCATCAGACA 20451 37 100.0 38 ..................................... TAAAGCCGCAAATGAAGCACTAGGTAAAATAGGCGACT 20376 37 100.0 36 ..................................... AATCTACCTTGACCCCTTAACAGGTGAAATTACTGA 20303 37 100.0 33 ..................................... TAAAGCTTTAACAAGTGCTGGTAATGCAGCCAC 20233 37 97.3 34 .................................A... TGGTAATGCAGCCACAACAGCCACTACAGCCCTA 20162 37 100.0 35 ..................................... CCGCGATTGAGCGAGTAGGCGTATTCAGCGACAAG 20090 37 100.0 35 ..................................... AGAGATACGGGTGAGATACTAAAACTTGGATTGCT 20018 37 100.0 34 ..................................... ATCCCAGGTAAAGACGGGAAGAATGGTAGAGATG 19947 37 100.0 36 ..................................... CCGACAAGAAAACCACTAAAGAAAAAGAAAAACCCA 19874 37 100.0 36 ..................................... CTCGTTGTACTTCTTTTTTGAAGGCTTCATGTTTTA 19801 37 100.0 32 ..................................... TGGAAATATGTAAACTGGAAGCCTACTCAGAC 19732 37 100.0 36 ..................................... TACAAGAGCATCTATTGTAGTGAGCTTCCATTCACC 19659 37 100.0 34 ..................................... CTAAGTCCGTGGCATTTTAACTTAAAAAAATTCG 19588 37 100.0 38 ..................................... TTCACCAGTCAGTTTGAGGATGCTGGTAGTGAATTCAT 19513 37 100.0 35 ..................................... TAAGTATTGGTATTATCGGTACTGCTGGATGGATG 19441 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.8 35 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTACTTTTTGGTAAATGGCGTATTAACAGCGAGTGGGAAAAAATTTCGATTGAGTTTAAAGATGATATGACTTATACCCAAACCAAAACACAGACATATATTTTAGCTAAACCTAAAGAATTATTCACTGGTGATAAATTTACTGGTGTATGGTATGTCAATTATGGCAGATTATTTTTAATTGTTAAAGCTGCGCCCCAATCTATGTTTAACTTCAGTTTACCAATATTACATAAAATTAATTTGGCAGATATATTAATCACTTTCATCTCTTTGTTTACGGCAGAAAAGTATGAAATAGTTAAAATTAATCAGACTGAATTGATTATGAAAGATGAAAAGGAATTAATTATTGGGAAGAAAATAATTAGGAATGCAAATTTTTAGAGTTATACTTCATTTAATGTAAAGTTTCACGTATATTGATCCCCCTAAATCCCCCTTAGAAATGGGGATTTTGAAGCATTTTCCCTTGTAAATGTAAGTCCAACTCTAAACTC # Right flank : GGCGGAAGCCGGAAAGCTAGTGTTTATTTGGTTTTCAAGGTTCAGTTTCGCGGATGGGTTGATTATAACAGTATCAAAAGTCAGTTGATTTGAGGAAAATGGCTGAAACCGTTGCTGTACAAAGTGCGCGGGTGATTTTAATTGAATTTTTCGGCAAAAGCTTGTGCTGAAAGGGAGACAGCTATTTTTCCTCAAGGCGAATTTTTTACACCTACCCATCCGCGAATTAGGCAAAGAAAATGCTTTCGTCGCGGGGTTGTTCGCCACCGATGCGTTCGATTTTATCAAAACAGCAGGCGCAGAGAAAGTAAAAGCGAATGCTGTCGGTATCTGGTTTAATGAGTTTGTGCAAACGCGATCGCAATTTGGCATATTGAGTCTCAGTCAACTGGCACTCAAACACACTGTACTGCACCCACTGTCCATAAGATTTTAAAATTTTATGGATTTTCGTCCGGCGTTTGTCTTCTGGGACATCGTAGGATACAATGACTTTCTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 126695-125563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000011.1 Anabaena sp. FACHB-83 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 126694 37 100.0 38 ..................................... ATCAAATTAAAGGGGATGAGGTGGAGCTTTGCATCCTT 126619 37 100.0 34 ..................................... GGAACAGGGAGCTAGACCCAGCCCTCAACACTGG 126548 37 100.0 35 ..................................... GTGCAGATTTTAAACAGCCTGACCAGTATGACGCA 126476 37 100.0 34 ..................................... CTGGAGTCATCCGCTCAATGCCAGCATTGATTAA 126405 37 100.0 34 ..................................... GAGGCAGGAACTCCGCAACGGATCAACCGATGAG 126334 37 100.0 37 ..................................... TTTGTGTTGTGGGTAGTACATCTTGGCTGTTATCTCA 126260 37 100.0 37 ..................................... TTTGTGTTGTGGGTAGTACATCTTGGCTGTTATCTCA 126186 37 100.0 33 ..................................... GCCGCATAGCATCCACTTACCAGCGACATTTAG 126116 37 100.0 34 ..................................... CATCTTGAGAGCGATCGCCTTAAGTTTGCGAATC 126045 37 100.0 35 ..................................... AGGCACTCAGGCAGTACCAATCTGGCTGCAATGAG 125973 37 100.0 34 ..................................... TGATTGCTGCATTAATTGCCAAAATACCGACCAC 125902 37 100.0 40 ..................................... CATGTCTACCAATAAAATAGCTTTACATAATCTAGTTAAA 125825 37 100.0 36 ..................................... CTCACCATCCCCGATAAGCTTTGATAGTTCCTCTAC 125752 37 100.0 38 ..................................... GGACAGCAGGAGCCGGAAGATACTAGATTATTTCTTGA 125677 37 100.0 41 ..................................... TGATTCATCAAGAGTAATGGGTAAAAGGTCAATCAATCGGT 125599 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 100.0 36 GTTAAAATCTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : TTTCCATCTGTAAGTTGAATAATGGTATCAGGTGTGGCAACCTTGAGGGCTTGGCTAATGGTTTTAAATGGCGCTTGCTGGCTACCAGGGTTGGTACTATTGCCAGTTAAAGGATTTACGTAAAATTTTTGAGGCATATTTATACCGCTAAAACATAGTCATACTATTAGCTCTAACTGGTAAAATGGCTAGTTATTGCTAAAATTTGCAACATTGACTACCAAATTTAACGGCTAAATTCCTGAAATTCCCAGATAGACAAACTTACCCCAAACACGCGGATAGGTAGGTGTACAAAATCGTCTTTGAGGAATAACGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAATTTAATTAAAATTATCCGCGCACCTTATACAGCCTGGGTTTCAGCATTTTCATGTAAATCAACTGACATTTCATCATGTTAGAATTATGCCATCCGCGAAACTGCACCTTGAAAACTAAATACAGCAAGCTTTTCCGGCTTCCGCA # Right flank : CTTGTATTACTTGCTTGCTGTTGCCCACAAGGATGTTTCTTGTTTCGCGCAAAGGCGCAAAGACGCAAAGAATCAATATTTACTCTCTGCTAAAAACCTTAATTCATCCCGCAAATAAGCAACGCTCAAAAATTAACTATTTCACATGAACCGGAAACACACCCAAAGCAATTAATCTAGCGGGTAAATCGCGCAAAATTGGTAAGCGTAACAATGCTGGCGGTTGAAAAGTCTGATTAGCAGACAACACAGGTGCAAATACTCGCTTTTGAATAAATGTCTGAAATGCTTGAATAATGCGTGTCGGTAACTCTCGCTGACGCTGGACTTTGGCTAAGTCACTCAGCTTGACTTGGTGATTTTGCAGAGGTTGACTGAGAACATTAGCGGCTACGACTGCATCTTGAATGGCGTAGTTAATCCCCACACCGCCAACGGGAGACATAATATGAGCAGCATCACCAATGAGTAACAACCCTGGAAGATACCACTGTTTAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 449480-448538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000002.1 Anabaena sp. FACHB-83 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 449479 37 100.0 34 ..................................... AAAGACTATATTTCGACCTTCTGGAAATTTGCCT 449408 37 100.0 37 ..................................... CAAACACTAAATCTAGATGAGCATTTACCCACACATC 449334 37 100.0 38 ..................................... AGAAAATACAGTAAATAAGGTTAACTACATTAAACCCG 449259 37 100.0 38 ..................................... GATTTAGTAAGTTTATCTAATTCAAGATTACAACTAAT 449184 37 100.0 35 ..................................... ATTAGGAGTAAATAAATAAAGTTCTTTATCATGTT 449112 37 100.0 44 ..................................... CATAGTCGTATCTTGTGATATAGTGACAAACATAGTTTACAGCA 449031 37 100.0 36 ..................................... AGCTTTGATAATGCTTGGCAGTGGTTAGGGTATAGC 448958 37 100.0 43 ..................................... CTTTGTATCTATCCTAGCTCTATATCCAATTCCGTTATCCGGT 448878 37 100.0 36 ..................................... ATAATTACAGCCTACTGAGTGTTATACTTGGTAGGC 448805 37 100.0 44 ..................................... ATGCTTTTTCTCCAATAAAAAAGGAGGTGAGTATACCTCCTGAA 448724 37 100.0 39 ..................................... CTTTAAATTAGATGGTTGTTTGCCCCATTCATAGCGAAC 448648 37 100.0 37 ..................................... CTCGCCTTCAACAACTTATCCACAGGCGCGATCGCAA 448574 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 13 37 100.0 38 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AATACATAATCCTCTATCTTAAGAGAAGTTGAGGCGATCGCTTTTGCTGAGTCTTTGTTATTGCAAGCAGCCAACCACCGCCGCCGCGAAAGTTAACTCAGCAGCAATTGTAGGAACTGGCTTGATTTTTGAAATTATCTTTAAAGGCTGGGAGTAGGAAAGAGGATTTTTTTGGTGTACTGTATTTTTTATGCAAATCCAATGTTGTTCCTAATAGATACCCGACTTTTTGAAAAAGTCGGGTATCTGAGCAGCACGACAAAATTAGTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTGAATCAGAATGGCTGGATTCCTTGGAGAGTAAGGTTTTGCAGAAAAATTTAATTAAAATCGTCCGCGCACCTTACGCAGTATGAGTTTCAGCGATTTCATGTAAATCAATTGACATTCCACCATGTTAAAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATATAGTAAGCTTTTCCGGCTCCCGCG # Right flank : ATTATCGCTCATGGAAATTTTCAAGAGTTAGTAAATGATTGCAATTTAAACGATGAATTGTCTCACACAGAGGCACAGACGCGACAAGGCGTTTTATGTTTGAGTCCATGAAATTTCATCTCTTGATTCAGCAATACCAAGTCTTTATTAGTCAGACGATGGAGTTAATTATTCAAGGTGTTGGCAAAAATTAAAACGGGATAGGCGAACCTATCCCGTCAACATATACTAGCGTTTAAACTTTAACGCTGAGTTTAAGTTCCACTAGTCCAAGAGTTGATGTACTCAATTTGATCTGGTGTCAAGCTATCGATATAAATGCCAATAGCTTCCAACTTCAACCGCGCAATTTCTTGATCTACCTCAGTAGGAATCGAGTGTAAACCAGGTTCCAATTTACCTTGATTCTTCACCAAGTATTCACACGCCAAGGCTTGGTTTGCAAAACTCATATCCATTACCGCGCTAGGATGTCCTTCGGCTGCGGCGAGGTTGACTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 24396-25802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000020.1 Anabaena sp. FACHB-83 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 24396 37 100.0 34 ..................................... CTTTATATGTTTCAAATGGTGACATATATGTAGG 24467 37 100.0 35 ..................................... CTTATATTAAAGAAAATGTATCTTATAAATTTGAT 24539 37 100.0 35 ..................................... AAGTAAAAAATCACGTAAGGCATCACTAAATAGAA 24611 37 100.0 33 ..................................... TCGATTGACTCTGCTGTTTAAATCTTCTGATTC 24681 37 100.0 34 ..................................... CACTGTGCAAGCGTTCGCATTGGGCCAGTGCAGA 24752 37 100.0 34 ..................................... TCGCGCCGTGTTTTTTGGCGGCGACTCTAAATGG 24823 37 100.0 35 ..................................... GCAAGGAAACTAAACATATCGATTAGAACGGTCGA 24895 37 100.0 36 ..................................... CATTACCTTTTAAAATAGAATCCTTGCCGCGAGATT 24968 37 100.0 37 ..................................... TTGCCGTAAATATCCTCATTGGATAATATCTGAGAAG 25042 37 100.0 33 ..................................... CATCCACACTGGGGATGCGTAAGCCTGCCACAA 25112 37 100.0 33 ..................................... AGACCAGTATACGTTACTTGGTTGCAAGGGATT 25182 37 100.0 41 ..................................... AGTGATCGTAGGCACATCAGTAGGCAGGGAATCGTATTTGG 25260 37 100.0 33 ..................................... ATTGGGAATCTGATAATGAATGGCGTATACCAA 25330 37 100.0 31 ..................................... GACTACCGCTATGGTTCACTAGGCGGGAAAG 25398 37 100.0 35 ..................................... GTTTTACCCAGACAACAATATCATCCCAGTGGCGT 25470 37 100.0 34 ..................................... ATTTCTTCCAGATACTTGACGAGTTTCTGCTTGG 25541 37 100.0 38 ..................................... GTGCTGCGCGGTTGATTTGGACTCAAACCGCGACCCCT 25616 37 100.0 42 ..................................... ATCAACTTATCGTACTGGCGCTGGGCTTCAGTCAACAACTGA 25695 37 100.0 34 ..................................... ATAACAAAACCTGTACTATCCTCTAGACAGTAAA 25766 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 100.0 35 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : CATTATTAATGTATGATATGCTGACGCGGATTCAAAACTCCACATTACCAGGAAGACCGCGTTTAGGTTTGCGCCAAGTAAAAATTACCGTCGGTGAACCAATTTCTGTTACCGAACGCTGGGAAAAGTCCCAAAACAACCGTCAAGCAGCCAGACAAGCAGCCAGTAATTTAACCAAAGACTTGCAAACAGCATTAGAAAATTTGATTAACTAGTACAACAAGGCAAAAGGAAAAAGGCAAAAGTTAAAAGTAAGAACTGAATTTCCCCAAATGCGCGAATGGATAGGTGTAAAAAATTAGGGTTTCACCAAAATGGCTGTATTCCTTTCAGCATCAGGTTTTGCCGAAAAAAATAAATTAAAATCATCCGCGCACCTTATACAGTATAGGTTTCAGAGATTCAGTGTCAATCAATTGACATTATCGGGTGTTATAATCAACCCATCCGCGAAACTGAACCTTGAAAACTTCATAGCACAAGACTTTCTGCCTCCCGCT # Right flank : CTTTATTCACAGTTATAGCAATTTGAAAGAAGAATGCGACAGATATAAATCAGAAAAGTCTTACTGGAGCTAAATTTCTTAATGGCGAATTGCGAATTACGAATTGGTATTACTTCTATACATTGCATTGTTGATGTACAGATAATAAAGTACATTCCCAAACTAAACGCGGTTGGGCGTAAACTAAAAGTGCCTTGCGTGCCTGTTCTAGCTGATTAATAACTCCTGGTTGATGCCACTTTTGCCAATAAGAATGTTGTAGGTAATCAATTAACCATAGTTGTGATTCTGTATCTAAATCTTTGTCAATTGTTTTAGCTAGTTCTAAAGCATGGCGGGCAGATTTTGGGGCGGCGGTGAGGTGTGAGAGTAACTCAGAGGGGATAACTTGTAATTGTTCATAACAAGCGATCGCATTTCCCGGACTGCCAGCCGCTATACTCAACACAGCCGGATGTTGCAAAATTTCTTGATGATTTGTTTGCTGCAATACTTGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 54530-55454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000029.1 Anabaena sp. FACHB-83 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 54530 37 100.0 38 ..................................... AAAAAAATGATAGATGATGGTAATCTATCTGATGAAAA 54605 37 100.0 35 ..................................... CAAGCTTTAGCCTTGCAAAGTTGTCTCCAAAATCA 54677 37 100.0 35 ..................................... TAGCAAAAGTAACTCTCATTTTGTTCTCCGCTTTT 54749 37 100.0 34 ..................................... GTACGAGTGCAGTTTATACAATGGTGAACTTGTC 54820 37 100.0 34 ..................................... AACAAAAGCCATTGCTATATTTTTTGCTAACCAA 54891 37 100.0 36 ..................................... TAATTAATGGCTGATAAAAAAAGTATTTTCAGGAAT 54964 37 100.0 39 ..................................... ATCTTGAGCTTATTTAGATATGGCTAATGTAACTTATGA 55040 37 100.0 36 ..................................... AACAAGCTCTGATTTATGCAACGGGCCAATATTAAC 55113 37 100.0 38 ..................................... ATGAGAATGCGATCGCGGAAACAAGGCATTGATGTGAA 55188 37 100.0 39 ..................................... TAGCCAAGAGTCAACGATTAAAGTAGGAATTTCCCAAAG 55264 37 100.0 43 ..................................... GCGATCGCGGAGTGGGAGCCTTTGCTCGCTGAGGGGGCTTGAA 55344 37 100.0 34 ..................................... TAGTGACTCGGAATGATGCCAATTATCGCCAAGT 55415 37 91.9 0 ................................T..TT | T,C,A [55443,55446,55448] ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 99.4 37 ATTGCAATTTCTCTTAATCCCTATCAGGGATTGAAAC # Left flank : TCTAAACCCAAACCCACAATAAGCGCGATGTCTGACGATCAGCCGCGAAGCGCGTCTACGCGGTTGATTGTACTATTTGAATGACGCGGCTCTCATGAACGCCAACGCACAGAATCACGTTGCTCTATAGGCTATCTTGGTACGGTTGAGAAAGATCGGTCTTAACGGGTGTTGAAGCGATCGCACCAATGCCAGTTTAAAAAGCATCAGTTATCTTGTGCGGTTATAATGCCAAGTGAACATCACCCAAACACAACAAAATTTTTCGGCTCAATGCGCGGATGGGTAGGTGTACAAAATTAGGTTTTCCCAAAAATCGCTGTGTTCTTCTCGGTGCAAGCTTTTGAGCTTGTGATAGAGCAAAATAGTCCGCGCCTCTTTTCCTGTCTGCATTCCAGCATTTTTGTGTCAGTCAATTGCAATTTAGGAGTGTTACAATTGAGCCACTGGCGGAATCGAACCTTGAAAACCGAATATACATTAGCTTTCCGACTCCCGCA # Right flank : TCTCTAGCTAATTCCTACACTATTCAACGCAAATCCGGCGAGTAGTATTCATTAATTTTACCGCATAACAGCATAGCAATTTGTTTGGCTTGCAAGTACAACAGTTCTTCATAAGAGCATTTGATTTTTGTCCCTGGATAGGTAAATTGCTCGTTCATCTTTTGCATATATGAGTATTGAAGCGCATGAACTACAGAAAGCGGTAATCCCGATTTATCTCCATGTCCATCAAAATCTTCCCTAACAATCACTTGCTTATTTAAAACTCTGATCACCACTAACTCACTGTAGAGCTTAAACTCATTCGCTAAATCGGCAATCAAGGCTTGTTGTTGATGACGATTCGTATGCCAAAATCCGATTGTGGGGTTTAGTCCGGTATTTTCAACTGCTATTTTTACCGATTCTTCTAGCAATCTATAGCTAAAATCTAACATCCTGCTGACAACTGAATTTGGTTCATGGCATTTTAAACCCCACTCATGTTTGAGCAAATGCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 56932-57478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000039.1 Anabaena sp. FACHB-83 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 56932 37 100.0 34 ..................................... AATTTAAGACGTTCCCCCATTTTACCAATATCGG 57003 37 100.0 35 ..................................... CTACAGAGAGGCTTGAATGAAGAATTGATTGGTTG 57075 37 100.0 41 ..................................... TGCGTGGGCTGAGATTTCGGCAGGCTCTCTACAAGATGTGG 57153 37 100.0 37 ..................................... GGAATAATCGGGGCTGCCATCACCATCGGCATCAGAA 57227 37 100.0 34 ..................................... AAATTTTCACAATAGGTAAACCAACTCATGGTAA 57298 37 100.0 34 ..................................... AGAAGCGGAGTTAATTGGTGCGATCGCTCAAGCA 57369 37 100.0 36 ..................................... AGACTAAAACTTCCATACAAGCAATTTAAACAAGAC 57442 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 36 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGTGGCAAAATCTGGTGGTAACGGGAGAATTTACAGCCTTAGAATTATGGCAAGCTTTAAGTAGTAATCCCGCAAAATGTTTGGGACAGGAATTAAGTACATTAACTGCTAATCAAAAAGCCGAGTTAACTTTGTTTGACCCTTCGCAAACCTGGAAAGTGGAAAGGAAAAATTTACAGACACTTTCGAGTAATACACCTTGGATGGGGCGAGAATTACAAGGTCGGGTGTTGCAAATTTGGTGTTAAATTAATCTTGGTAGTTTTGGCGATCGCGCGGATGGGTAGGTGTTCAAAAATAGCGGTTCGGGAAAATGGCTGTATTCCTTTCAGCACAAGCTTTTGCCAAAAAAATAAATTAAAATCATCCGCGCACCTTGCTATGTATAGATTCCAGCGTTTTTGTGTCAATCAATTTGCATTATGCTGTGTTATAATTTTTCCATCCGCGCAACTGAACCTTGAAAACTTTATAGGACAACGCTTTCTGGCTCCCGCT # Right flank : ATCTTAGAAGCATCTCTGAGGCTTGCTGAGGACTTCCAAGGTACAGCACTTGCGTCTGTTATGAGGTACAATAAATTAAAATATAAATACCTCTAAATGAAGTCATACTCTGTCGATCTTCGAGAAAAAATAGTTGCAGCACATCTTCAAAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 15502-15879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000041.1 Anabaena sp. FACHB-83 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 15502 36 100.0 32 .................................... CTTTTGAAAATCAGATGAACTGCCTCTCCAAA 15570 36 100.0 34 .................................... CGCAGGTAAAGCATCAAGAATCCGAGCCATAGAA 15640 36 100.0 30 .................................... CTCTAATGCTTTTTGGAATGCTCTATTAAA 15706 36 100.0 30 .................................... CTCTAATGCTTTTTGGAATGCTCTATTAAA 15772 36 100.0 36 .................................... AACCAGTTGACATTCTCGTCATTGGAGATTTTTTCC 15844 36 88.9 0 ...............T.....A........T.T... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 33 CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Left flank : CAAGTAACAGGACGTTCTTTCAACCCCATTGAAATTACTCTCAAGCAGCAGTTCCGCAAATAGATTAGCTAAATTTTTGTAAAATTACTGTTATATCTAGTAGTCTGCCAAGATAACTTTGCGTGGTGGCTGGCAGAGGGGCAGAGGGGCAGAGGAGAGAGAAGAGGCTTCGGGGCAGAGGGGCTTCGGGGCAGAGGGGAGAGTACCTTCATTCTCCCCTGCTCCCCTGCTCCCTTGCTCCCTTACAGGGTCTACACAGCAATATTGGGTTGGTGGACTACTAGGTTTGAGGCGTTTTCACAGAGTTTTTTATTGTTCATCGACGCATCTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGATGCGTCGACTGCTTACAGGGCAAGGGTTTGAGGTATGTGTTTTGGTCAATTTTCCCTGATGATTTATAATGATTTTAGAGATGCGTCGATTTGGCGGCTGAAACTCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : CTCAAAATTAGAAGCTTGAATTTTGTAGTTCTGATAACTAAAAAAGAGGTTAGATACTAATATATCTAACCTCTTTTGTTTATCTATTATTGATATTTTGATAAATCAAATATTTTCTTGTTGATTTAACCAAACTACTAAATCAGGCAGCGATGAAAATCTGAGGATAGCTCTGCCTAAAGCTTCTATAGCAATCCTACCCCAATTGTGAGAAAATACGTAGACAAAAATCCTTGTTTTATAAGCATTTGAGGCTTATTGAACTCTCATGTATCATTTAGGATTGCTATAGCTTTTCTTTATTTAAAACTTGAATTCGCTCAATAATTGACGAATCAATTTCACCAAATCGTTCATTTAGTAATAACAAACAGAATTTAATTTCACCCTTTTGTTCACCCTTCTGAAATATATGCTGATAAATTACTGACTCTTGCATAATCTCCTCTCGTAATAATTGAAGAATTAAACCTTGTTCATACTTTAACCCTGCTAAAATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 25242-26077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000041.1 Anabaena sp. FACHB-83 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 25242 37 100.0 41 ..................................... TTGACTTGACCGCATCTAGTACAGCAATAACATGATTAGAA 25320 37 100.0 34 ..................................... AGCAATAGAAAATAAGTTTGGTTGGCAGTGATCC 25391 37 100.0 36 ..................................... ACACAACGTATTAACTGAATATACACAAGCACTACG 25464 37 100.0 34 ..................................... TGTCCCCACTTGCCACCTGACTTTGCAGGAACAG 25535 37 100.0 34 ..................................... AGGATTTGCAAAGACAAAAAACAACATATAAAAC 25606 37 100.0 35 ..................................... TTTAATTTACCTAAAAACATCTTTTTGCTATTAAC 25678 37 100.0 34 ..................................... AAGTGGTGCATTTAGGTTGATTTGTATTTCCTGA 25749 37 100.0 35 ..................................... GATATTGACCAACGTGTTGATGATGCCTAGATTCA 25821 37 100.0 38 ..................................... TACTCATATCTGGATGACTGGCTATTTCATCCCACAAA 25896 37 97.3 36 .......T............................. TGTGTAAAGAGTGGTTAGAGAGTTTAGACATCCCCG 25969 37 100.0 35 ..................................... TTGCGGTTCCTGGTGAAACAACCTCGTGAGATACA 26041 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.5 36 GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAAT # Left flank : AAATTAGCACATCAAACTTAACACACATACTTTCTGCCTTTTGTCTAGTCCTCCTATTGCTATCCTCTTCTCAAATCATCTCTTCAATTAGCTTTCAGCTTTTGTTAAGAAAGATGTGACTAATGGATAGCTTGGAAAGGGGGGATTTAGGGGGATCGAAATATGTACAACTTCACATTAAATTGGTATCAGGATGATAGCGATCGCTATTTTTATCTGTAATCTGACTGCACAGTTGACATACTCACTGGCGCGGATGAGTGGGTGTTTAAGAATTTGAGGCAATTTTTGTGGTTCAAAGGCTTATGTCGTATAGCTTTGAGGTGGATGGCTACAATATGGAGTTCCGCGCAATTCCTAGAAGCTTTGCCTGTTATGCTTTTGAGGCAATTTACAAAGGTGATGTCTTGACGAGCCAACGGCTAAAATGCTACTTTCTTTCTAGTCCCGCGCAAAGTGGCTTTAAAACCTTTGCAATATCAAGGTTTCAGAAGCCCGCA # Right flank : CATCATCTCTTTCCTGAGCGTGTTGTGTGGCTGCGCTTTACCGATTAACTCAAATCGGAATTATTGGAAACGCCTGGTAGACCACGATGGTCGGTGTAATGGAAGTCAAACTTTACCGATTAACTCAAATCGGAATAATTGAAAACACTTCTACTGGCTGTTGTGGCGATATATCTCGCCGAAAGTGTTTTGATTCCTCAAATCAGAATTTGAGCGGTTCTCAGTTGGATGAAGTACATTTCAACCCCACCCCCAACCCCTCCCCGCGTGCGGGGAGGTGTTGGGGGTGGGGTTCCGACTGTATTACAAGCAAGTAAGAACCGCTATCACCAAAACAGCAAAAAGAAACCCGACTTTATTTAAAGTCGGGTTTTTAATAGTGGAAATAACTTATCGGATCAAAATCATGCGGATTAAAATACTCATCACCTCATCTGGATTAGCAGTGGGTAAAAGTGGACTCCAGTCACCAGTGCTGGCGTAGCCAATAACGTGCAGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 41664-43253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000042.1 Anabaena sp. FACHB-83 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 41664 37 100.0 33 ..................................... ACGACTCATTAATTAACCTCACTTAATAAAACC 41734 37 100.0 37 ..................................... GGGTAGCTACCCATATATTAATCGGTATTTCACTAAG 41808 37 100.0 38 ..................................... ATCAAGCAATACTCTTCTAAAGTTTCATAGGGAGAGTT 41883 37 100.0 33 ..................................... TAATCGCAGGCGATCGCACCTTAACGGAGGAAA 41953 37 100.0 36 ..................................... AGTTCTTCGCTTAACATAAATCCTCGTCAGTGCCAG 42026 37 100.0 33 ..................................... GTCCATAATACTATTTAGTGGTGAGTTTTCTCT 42096 37 100.0 34 ..................................... AATACGAACACCAAACAGGATATGGATGACAGGA 42167 37 100.0 40 ..................................... TTCAAGAAGGAAATTATCAAGCAGAGGATGATTTACCTTG 42244 37 100.0 38 ..................................... TTATGTGATGCCATTATTTTCCTTTGATTATTAGCGAT 42319 37 100.0 35 ..................................... AAATCAGGATAAAACATTCTAAAACCTGTACCATT 42391 37 100.0 34 ..................................... AGTACACTCGTGAAAAATTCGCGCGAACCTTAAA 42462 37 100.0 43 ..................................... ATAAACAAAGTGCTGGAACACCCAGATGAGCAACTGCCGGAAT 42542 37 100.0 40 ..................................... GGGGGAGTGCGGCGGACAGGGTAGCGGCGGAAGCCTTTAA 42619 37 100.0 43 ..................................... CCGTCAAACAACAGAAAATAATATTCAGTGGAAAATTGCTCTA 42699 37 100.0 36 ..................................... GATAATCCCAATAACAGGGAGGATGCCAGCCAAGTT 42772 37 100.0 38 ..................................... GTTGTGCCAAACCACACATTCTTAAGAGGTAATTCAGG 42847 37 100.0 35 ..................................... TTTTACCTCAGATTATAAGTGTGTAAGTAGTGATT 42919 37 100.0 37 ..................................... CAGCAAAAATACCAGAAGTCCATCTGAAGCGTTGAGA 42993 37 100.0 42 ..................................... TCCTTAACGATACCTAAGATAGGGTCTTTGATTTCGACAGAT 43072 37 100.0 34 ..................................... CAGGCGTGGGGTAGTACCAGCGAACCGCCTTTTG 43143 37 100.0 37 ..................................... GTCTTGACCGCGATCGCAAAATACATCATCTTCAAAC 43217 37 89.2 0 .C.......T.......C..............A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 22 37 99.5 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : GATGCACTGTTTCTGTGGTGGCTTTTAAGATGTGATGCGTCATGAATAGAGGAATCAAGTTTGATTTCTCAATTTACTTGTGTATGCAGGGCGTAGGGAATAGAAAGTGGGGAGAAAATTATTTACAAAAATTTTTCTACTTACGCTTGACAGGTATACCGCCAACCCCAATGAAGTCATAAGTATTTTAATCCGCCAAATCTTGATGTAATATCTAGATCCCCGACTTTTTCAAAAAGTCGGGGATCTAAACAGCACGACAAAATTGGTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTAAGCAAGAATGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAAATAATTAAAATTGTCCGCGCACCTTACATAGTGAAGGTTTCAGCGATTTCATGTAAATCAATTGACATTCCACCATGTTAGAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGCAAGCTTTTCCGGCTCCCGCT # Right flank : CCATTGATCTACTCTGTATTTATTATATGGGTCGCCCGGGATTCGAACCCGGAACTAATCGGTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCGACCCTTTTGCTTTGTTTGCAACTTTGCCATCATAGCACAAACACCATTGGATTTGTAAAGGGGTTTTTAGAAAAAACTTGCCGTCAATCTAACAGATGCTTGATAGCTGGCTCCTGGCTCTACCACAGTCAAATTTTCGCCTGTGTTTAGAGAGTTGCGCGGCGCACTCCAAGGTTCCAAACAATAAAAGTCTTTGCCCTTGAGCGTCCAAAATACCACGATGGGATATTCATCGCCGTAATCTAAAGTCAATTTTAATTTACGACTGTTGTCTGTGACTGTAGCTGAATTAGCAGTTAGTTCCTTAAAGGCAACATCAATCTCATCCAAATTGAAATCAAAATTCCCACCAAAGAATTTTCTTTCCTTAGTTCTCTGGTCTTGATACTCACCAGCCGGAATCGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 33700-32044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000044.1 Anabaena sp. FACHB-83 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 33699 37 100.0 34 ..................................... CAGAGTTAGCAGAGAAGTATAAATGTAATTTAAA 33628 37 100.0 37 ..................................... TCAAGTACTAAAAGTACTTTATTCATTGCATACAATT 33554 37 100.0 37 ..................................... TGTAAATAACCCATATACATTAATTGAACAAGAATCT 33480 37 100.0 36 ..................................... TTTCTTTAAATTCTTCCGACCGTTTAATTCCTCTAC 33407 37 100.0 36 ..................................... AAAACTTAAATCTATTTCGGAAGCTGGATCAAAACT 33334 37 100.0 33 ..................................... CTTTGCCTATAAATATCAATGAAGTACCAGAAC 33264 37 100.0 42 ..................................... CTGCCTGGAATAAATCTAGTTGATACATAGCTTGCCAGTAAT 33185 37 100.0 37 ..................................... AGATTCTACGGTGCTAATTACGACAAATGTGACCCTG 33111 37 100.0 38 ..................................... TTAGGCCCCAAGCTTCAAAAATTAATACAGGGTCATGA 33036 37 100.0 38 ..................................... GAGTATTAAAAACTGATTTCTCAAATTTTAAAAAAGAA 32961 37 100.0 37 ..................................... TCAGCCATTGCATCTTTTTGCAAGGATTGAGCGTTTC 32887 37 100.0 34 ..................................... TGCTGAGGTGTTTGAGTAATGAATAACTACTTTG 32816 37 100.0 35 ..................................... TACGGTAACCGCCCAAGGACAATCTACTGATTCGA 32744 37 100.0 33 ..................................... GGTGCTGTTGTGTGTTGTGTTGCGGCGCTTTAG 32674 37 100.0 44 ..................................... TGGTCATTGTTGTTGATTCCATATTATGGTTTACATTTCCTTGT 32593 37 100.0 37 ..................................... TCGCAGACTATTTGTCTCAATATCACTCTGCTGGAGA 32519 37 100.0 34 ..................................... CTTTGGGGATGGCGCAACTTCCTCCTGTTTAAAC 32448 37 100.0 34 ..................................... GTGGATTATCGTTACACCGATATTTACAGGGAAT 32377 37 100.0 43 ..................................... ATATTAATAAGCTTGTTGTTGTTTAAGCTTAGTAATGCTTGAA 32297 37 100.0 34 ..................................... ACAAAGCTTAGACGCTCTTAAAAGACTTCTTGTG 32226 37 100.0 34 ..................................... TGATACCAGGGTTGGCAATAAACTTAGTTGGTAA 32155 37 100.0 38 ..................................... TGGTAATTCGCTGGCGCTGATGGATTTATTTCTTTTGA 32080 37 89.2 0 ...........................T.G..C...T | ========== ====== ====== ====== ===================================== ============================================ ================== 23 37 99.5 37 GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : TAACAGGTTTAGCCAAACAAGTCACAACCATCGATGTGACAATTCCTGGTTCACCATCACAAGCTAAGAATTAATCATCTAGAAGTTATGCACAAAGATTGGCTGTGAAAATGGGTGTAAGGGTGTAAAAGGGTTTTGAACATCTACACCCTCACAAAGAAGTCAAAATTCAAAAGTCCGAGAATTTTTGACTTTTGACTTGATTTTTCCCCTTCACCCATTCTCAACAAATAACCTTTGTGCATAAGCTACAACCAAACAAAATTCTTCTCGATGCGCGGATGGGTAGGTGTACAAAATCTCGCTTTTGACAAAATAGCTAGATTCCTTGAAGTGCAAGCTTTTGCAGAAAAAATTCCTAAAAATCATCCGCGCACCTTACCCAGTCTAGGTTTCAGCCATTTTAGTTAACTCAACTGATATTTCCCCATGTTAAAATCAACCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGACTGCCTTTCCAGTCCCCGCA # Right flank : TTGATGTAAAAGGGTATTTAGGGGGGATCTAAAATGTCTTGCTACCAAAGAGAGGACTTTTAAAACATCCTCTCAAATATCAATAAATCCCCCGCTAGAAAAGATAGATTATTTTAAACTTAAAGAATCATGTTGTGATAGTAATTTTTCCACCTTTGCCTCATCAATTCTTGCTGTTAATCTTTTAGCTTCGTGCAAATCTCTGGTTGTTTTTGCCAAGGTAAAAGTCGAACCAACAGAAAAAGCTAAACCCATACCCATAAAACCTTTTACCCAGTTATCTACAGGCAAATTCACAATCCCAAAGCTAGTCATAGAAACAGAAAGCATAAAAGCAGCCCATGTTTGAATAATCCAAGCTGTACTATCTTTTTGTGAACTTAGTTGCTGCATATTTCCGCCCGATAAATTCAAAATTTTCTAGCAATAGCAAAGGTAATTAGGATATTTGGAAATGAGACAAACTCGACAGAAAATAACTTTTAATTCTGTCACCTGTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 44687-44025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000043.1 Anabaena sp. FACHB-83 contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 44686 37 94.6 35 .........C..........A................ TTTCCACCAGCAACCATACCGACCGGCACACTAAC 44614 37 94.6 37 .........C..........A................ CAATTAGCGCGACCAAAGCGGCTAACTCTTGCCACTG 44540 37 94.6 38 .........C..........T................ TATGGTGTTAATGGTTGCCAAGGACGAGATTGTGGATC 44465 37 97.3 36 .........C........................... TGTCAGCCCCTGCGCTTTGTTCTTAGCTTTACTATT 44392 37 100.0 39 ..................................... CACACCAATCAAGAATACGATTTATACGAACTCGAAAAA 44316 37 100.0 69 ..................................... GCCGGAAACATTAGGCGTAGCGCGGGTATGAAACAAGTTTCTAACTGGCGTAGCGCGGGTATGAAACAA 44210 37 97.3 35 .........................A........... AAATTAAGCGAAATTCAGACAAAAGCCTATTTTTC 44138 37 97.3 40 ...........................A......... AACTAAGACACAAGATTCGTGAACTACTTCCATTAAGACG 44061 37 89.2 0 .........C...........A..A.......A.... | ========== ====== ====== ====== ===================================== ===================================================================== ================== 9 37 96.1 41 GTTTCTAACTACTAATTCCCCTCACGGGGATTGAAAC # Left flank : AACGCAATGACAGGCTTCCAGAGCGATCGCAAAACCGAAAGCTAGACGACAAAACCAAACTTTGGCTAGGATTTCAAGACTTGTGTGTACACCGTAGCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATGTTTGGCTACCAACAACAGGGCTTTTAAAACATCCTCTCCTACACCCTTACCCCAATCCTTGATTTTTTCTCCCTCTGCGTAACTCATCCGCATCGTCAACTAAGTAGATACCATGAGTACTAGACAAACCTGACTGGTCACTGTATCATGTTTGTATTAACTTGATGGTTGACAAATCAAAGCGGGGGCTAAAAACCCTGGGGATTCGTCAAAATCGCCAGAACCTTGACAACAAAATAATTACAGCGTTTCATATATCTGGTAAGTTGAGAATTAGTCGCAATTATGACGGCTGAAATTGACATCTTTTTGAGATTCGTCAAATTGCTTCCCAAAAACCTTGCTCCGTATCGGTTTCAGTACGGCGGG # Right flank : AAAAGTGCGATCGCAAAATCTATCGGTTTTATATAAGACTAATATCTGCACCTACACAAATACATTCAGCAATCAAACCGGATTTATATAGTTCATACTGAGAAATGAATAAATAGAAGTTCTTTGTTTGCTAGTTACAGATGATGAAGAAACTGCGGTTCGCTGTTTTAGCCATTAATATTATTATCTGCCTGAGTATATTTTTTGGACTAATAAGTAAAGTCTCTGCTCAACAACCGCAGATTTTACACCCTTTAACGCCGTTAACAGAAACAGAAATTACCACAGCCGTTGAGGTAGTTAAAAAAGCAAAATCGTTAAGCGACACGGCTATTTTTTCGATTGTGGCTTTAAAAGAACCAGATAAACAGGAAGTTTTAAATTTCACACCCAATCAAGAAGTTCAACGGCAAGCTTTTTTAGTAGTATACGAACGTTTACAAAACAAAACCTACGAAGGTATTGTTGACGTAAAACAGCAATCCCTTAATTCTTGGCAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACTACTAATTCCCCTCACGGGGATTGAAAC # Alternate repeat : GTTTCTAACCACTAATTCCCATCACGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 147-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000048.1 Anabaena sp. FACHB-83 contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 147 37 100.0 35 ..................................... ACACTTTTATCTGTTTTATACAGCACAGCAATAAA 219 37 100.0 35 ..................................... AAAATGTACTAGACGCGATCGCTATTCAAAGAGGG 291 37 100.0 34 ..................................... ATAAACCTTGAGAGCCATGAACTACTGAATGGAC 362 37 100.0 35 ..................................... TACAGGGTATACCTGGTAGAGATGGTAGACCGGGA 434 37 100.0 40 ..................................... CAGGTAGTTACAATTTCGATAAAGCTAAAAATATTACAGA 511 37 100.0 36 ..................................... TTACCATTAGGAACTTCGCCATCTGCACTTTCTGTC 584 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 99.6 36 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATCTTTTTTACGCAATTTTGCTCCAACTACAACAGAAATGGTTGATAAACTAATCTCAGTTGCACTCGACTTAATAAATCCTCAACATTTAAGAAACTGGTTTGCTAGTTGCTGCTACTGTACCTCATAACAGCCGTAGGTGCTGTA # Right flank : TATTAACCTATATAATCCACTGATTAATCTTGGAATTGCAATTTCAACTAATCCCTAAAACTGCTCATTCTTACCTAACAGGACTTACGTAATACCAGTTCTGCATGAAGATGCACAGAATCTTAAGAAACGAACCGCCAAGAGCGCCAAGAGCGCCAAGAATCTAGAGTTTCATTTAGTGCAGCTTCATATTAAATTGGTAAGCTAATCAGCATTTAAGCTGCACTATTGAAATTGTACATAAATGACTTAAACTCTCTCCTCTGCCCCTCTGCTCCCCTGCGGTCTAAACTGCAAACTAAGTGCTTAATAGCTTATAAGTGTCACGATTGGTAGTTGGTGCGTGACGCTATAAATTTGATGACTACGTTTAAATCTTCTCGTTGCGTCACACACCCTACAGAAAAAATATGCCAGTTACTTCTTACTCCTTATTTCGCTTGCGCCTCAAGTTGTCTCACCACGGTTAACGCCGAGTAACTCACGCCAGCCGTACCTTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 7572-8189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000005.1 Anabaena sp. FACHB-83 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 7572 34 97.1 40 A................................. CACTAATAATATTTCAAAGAACAGGTGTAATTCTACGCAA T [7576] 7647 34 100.0 38 .................................. CTGCTCGCACAGGTTTTGGAGGCGAAAGCGGAAGCATT 7719 34 100.0 38 .................................. CCAGCGCCAGCGCCAATCCCAACCCAGCCGCAATTGCG 7791 34 100.0 41 .................................. CTGTTGACTGGGATAAAGGAATTGACCAGTGGCTGCTTCCT 7866 34 100.0 39 .................................. CGAAAAAAAAAGCCGAAGAAAGGGCAGTTTATTGGGAAT 7939 34 100.0 38 .................................. CAGCTGTCTGATATTGTGGTGCCAATCCACAGGAAATA 8011 34 100.0 39 .................................. CTTGCGGTATAGTCGGAAATTTTATGCAGGTTCCGTACT 8084 34 100.0 38 .................................. CTGGTACGATGTACATTTTCTCGTTTTTTGGAGATTAA 8156 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 9 34 99.7 39 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Left flank : GCTCTCGATATATCTCTGCTAGATTATTCAAATTAGTCGCAATTTGAAAATGTTCTTGACCAAATATGTTTTGCCATAATTCTAGGGCTGATAAAAATAGCTTTTCTGCTTCTACATAATTACCTTGGGAATAGTAAAAGGCGGCGAGATTATTTAAAGATTGGGCAACATCAGGATGTTCTGAACCTAGAAGATTTTTTCTGAGGGTTAAGGCTTGCAAGTATAACGGTTGGGCTAATAAGTAATGTCCTTGCATCCGATATAATTCGGCGAGGTTATTTAAGCTATCACAATATTCAGGATTTTCTGTTAGCTGTTGATGTTTGCCTAGATTTACAGCTTGCTGGGCAACTATTAGAGCTTGTTCTAGGTTTCCTTTTCCTGCTAATTCGACAACTTGTAAGTTAAGTTGATTGAGTTGTTTTATAAGTTTTTTCATCTGCTAGTTCCAGATGTTTATATGTTTTTTTCGCTTTTATTAATTACTTATTTTATCTAAA # Right flank : ACCCTACCCTTTTAGAAGCCTTAGCCAGAGAGGGTTAGAGATAGGCATTTCTGAGGGGGGTCTAATTTACCTGTCAATAAACACATATTATTGAGAATAGCAGACTATTAGACTATCCTCAAAAGCTTATACAGTAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCATTGCCTGACCCCCGCAGGTAAACTTATGTAAAGAAAGTCAAAATCAATACTTCAAGATTCAGTTGGAAACTTGATATTAAATTTTCAAGGTTCTGTGCTTTTAAAGGGCAGTATAACAAAATACTTTAAATTTTGAAAGCTTCAAACATTAACTTTTCTATCATGCAGTAATCAGATAATCTGTATGCCAAAGTTGATATTCTCCGTGTTTGGTCAGATATTCTAGTAACTCTGTCAAATGACGAGCCTCTAATTCTAAAACCTCATCATTATCTTGGGTTAACCAGTCTAATTGAGGTACTTCTTTGGTAATGATGGCGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 2 13579-12523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000005.1 Anabaena sp. FACHB-83 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 13578 35 100.0 38 ................................... CTCTGATTGTAGCCACAGCAATGCCTGGGCTGGAAATA 13505 35 100.0 39 ................................... AAAAAGATGAAAGCTCAAAAATTGGCGTTGATTGGGATA 13431 35 100.0 40 ................................... AAAGCATAGAAGAACAAATACAATCAATTCTCATGGAGAT 13356 35 100.0 39 ................................... AGTTTTCTGGTGTGAACTTTGACCGTGACTATCCAACTG 13282 35 100.0 40 ................................... CGTATATATTAGCAATGGGAAGTACGAGGAAGCGAAAAAT 13207 35 100.0 36 ................................... TTTTGAAGACAAAAATTGGAGCAAATTAGTAGAAAA 13136 35 100.0 36 ................................... AAGACAGTAAGCGGGTTTTTGTTCCGTGCAGTACTG 13065 35 100.0 35 ................................... GTTTTTTTGGACAACAAACGCTCGTTACCTACCAG 12995 35 100.0 38 ................................... ACTTTGTCTGGAATGGTTCAACTCCCCTGAAACCCAAG 12922 35 100.0 38 ................................... AAAATAAAAGAAGAAATGTTGGCAAAGCTGCCAGCAAG 12849 35 100.0 39 ................................... ATCAGCATCAGCGAGAACGGAGAGAAGAGTTGGGTTGAG 12775 35 100.0 37 ................................... ATGAATATATCTGGTCTACGCATCGAACATGGAATGG 12703 35 100.0 36 ................................... AACTTTTCAGCGGGCTGGAAAGATGCAACTCAAGTC 12632 35 100.0 40 ................................... TCTTTGTCTGCCACATTGTTACTTAAGAAGGGCGGAGAAC 12557 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : CTTTGTGTAATTAATTATGTTTAACTACTTAGTATCCCAGACTTAAGCATATCTAAAATAATAAAGTGATTATTTATACTTTTTGTTGATTTAGCCAAGCTTCGAGTTCAGCCACTTCTGAGAAATTTAACAACTCTTCTCCCCATCCAGGGGTAAAAGCACAGTCACAGGTAAAATAGATGTACGCCAAGCCTCCATCCCCAAACCCCACAAACCACCATGAAACAAATTACCCTTGCAGAACTTCCCGAAACTGTCCAAAACCTAATTAACCAAGCTCAAAAAACAGGCGAACCCCTCACTATCATCCAAAATGGTGTCCCCTTCGCCATCATATCCCCCATTCAGAAAAAATCACTCCTGCAAACACTTTCTACCCTTGAACCATTGGACGAAGACTTTGCCGACGTGGACGAAGGATTATTGCCCTTAGAGGGTGTTTGAAAAAAGGAATTAAAACTCAATGAGTTTTTGCAAATTTTAGGAACCATCGGCGTAAA # Right flank : CCTACCTATTTAGAAACCTTATGCAGAAAGGGTTACAGATACCCATTTTCGCGGGGGGTCTAATTTACTTGTCAATAAGCTACATTTATTGAGAATTTAGTCCTAGTAGACCCGTCTCAAAAGCTTATTCAGACAGCTTTTCGCGGGGGTCAACGCAAGAATAAGGGTTGTACGGATCACCTGACCCCCGCGAAAAACTTACGTACACAAAGTAAAAACAAGTACTTTGAGATTCACTTGGAAACGTTAGATTAAGTTTTCAAGGTTCTGTTTGTTATTTTGGATAGTATCACAAAGTACTCGCACTTTTTACAGCATCAAACGCAAACTTAACATAAGTTTTCTCTACTACCACCCCGATTATTAAAGTTAAATGTGGAACAGCTTATTTCTGCCAAATCATTGGGCGATAAACTTCTACCTCCCCTTTCAAGCATGAAATATACTCTCGCACTTGCAACTCAAGAGCGCGACGATATGCTACTTTTTGTCCAGTGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 19640-18803 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000005.1 Anabaena sp. FACHB-83 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 19639 35 91.4 38 A...T.........C.................... CAGTTGCTATGATCAGTGCTTACGGCATTATCGTGGAT 19566 35 100.0 40 ................................... ACCAAGCCTTTTCAGCATTCCAAAGCGGAAGATTGATAGG 19491 35 100.0 39 ................................... AAAAGGGTATATTAAAACCCACCGCCCACCTAATTCACT 19417 35 100.0 36 ................................... CTTTGTTATCAGCAAACGCGAGTGACCACGCGATCA 19346 35 100.0 40 ................................... TGAATTAATAATCAGACAATTGTACGTCACCCAAGGCGGA 19271 35 100.0 40 ................................... CATTGTAGACGATCAATTGGTTACTGTCTTTCCGATCAAA 19196 35 100.0 35 ................................... ACCTTTGGAAGATATTCGCAGGGAAGTTTTACAAA 19126 35 100.0 38 ................................... TTTCAGAGCGGAAGACTTATAGGTGGGGGAATATCCCT 19053 35 100.0 36 ................................... ATCTTGGGGCATTCTTTGAAAATACGGCACAATATG 18982 35 100.0 37 ................................... AATACCAAAGGCCTTTAGATCCTTGCTATTCTTTAGA 18910 35 100.0 38 ................................... ACTTTCTGCAGATCAAATTAATTTGTTCAATGTAATGG 18837 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 12 35 99.3 38 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Left flank : TTATATGGTGGCTGCAAACCTAAAACAATATCTTCTTTTTGTACTCCCATCTCTAATAGTTCTTGTGCTAAATCCACATCTGTCATATTCTGCTGAATCCAGATTTTATCATTTTTAATATCAAAATGAATAACAGTGTGATACACACGACTTAAACCATTCCAACCTATACGCATCAATTGATAGTGGTCGTGCATTGTATCAAATATTAATTCGTTTTCAATCTCTTCACGTTGAGGTTTATACTTACTGTGTTTTGCTAATATTTCTTGGATAGATTGGCGGTATTGCTCTAGTTTGTCCATCTCACAATCACTTCCATAATTGGATCGTATATTATTAGTTTTAGTTGATGTCGCCGCACGGCAATTTTAGCAAGTTTAGTCTGAAAAAAGGTTTCATAAGCATCAACTGGAACTGCTAAATATAACTGACGTTCTGGTTCGTTTTCTTCCAGTGCAATTTGATTCGCATTATTACCCAATCCAGTAATTGATGAT # Right flank : ACTACCCTTTTGGAACACTTGCTACAACTGGGTTTGAAAGTGCCATTTTCGCGGGGGGTCTGATTTTACTGTCAATAAGCATACTTTATTGACAATTAGACACCATCACAGACACCTCAAAGCCTTACTGAGTAAGTGATTCGCGGGGGTCAACGAAAGAATCAGGGTTTCAAGCATTGCCTTACCCCCGCGAAAAATTTGCGTGTGAAAAGTAAAAATCAAGACTTTAACTTTCACCAGGAAACGCAATATTAAGTTTTCAAGGTTCTGCTTTCTTGGCAAAGAGTATACCAAACTACTCCTCAGTTTTTAAAGCGCGTCTTGCCAACTTGACATAAGTCTTCACCGTTTCATAAGGCATCTCTAAATCTTCTGCCACTACCTGCAACGACTCTCCCATTTCCCGCCTTGCTAAAATTGTCGCCCATTTTGAGGCTATTTCATCTGCTCGTTCTCCACCTGTTCGTTTGCGTCGTGCTTTAAATATCTGTGTTAAATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 324094-323403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000006.1 Anabaena sp. FACHB-83 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 324093 37 100.0 32 ..................................... CTGTAATGTGGTGTTTTGCTCTGAGTATGATT 324024 37 100.0 37 ..................................... ATTTTTATTTATTACGAAATGACGAATGGATAAAATT 323950 37 100.0 36 ..................................... TTTTTACCAATGATTCACCAACAATAGCAAATCCAT 323877 37 100.0 34 ..................................... TGGTTTCTACCGCAGGCTTGACCCTGCATTGCTT 323806 37 100.0 34 ..................................... TTCCTTAATAGTTCTATTGTTGTATAAACAATGG 323735 37 100.0 35 ..................................... GATTATTTGTGCAATTTTGGCATACACAAGCTATC 323663 37 100.0 34 ..................................... TGGGTGTTTAGCAGTCACCCACCATTTTTTGTGC 323592 37 100.0 38 ..................................... AGATTAAAACAAGAACCTGACGCTAAATACAATACTGT 323517 37 100.0 36 ..................................... GTGTTGACTAAGCTTTTTTAGCCTTTGCCCGTTTAA 323444 37 83.8 0 G.....................G...ATC.......A | TG,ATC [323406,323416] ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 98.4 35 ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAAATCCCGCCTAGAATTAAAATCCCAGGCTCATAGCTATGGAATACATAGAAAAATTAACCGCAGATGGACGCAGATAAACGCTGATAAAATAGGTGTTTCTGAGGCAAGATTTAAAGCTATTAAAAATAAAAGTAGGTTGGGTGTAACGAAGTGAAACCCAACATGGATAAGCAATACAGCAATCCTACATAAATTACAAACATCGCGCTACCTTGTCTACCCTGTCCTCCTTGTCTACCTTGTCTCTGTTATGTTCCTAGCACCTAAAAATGCGCGGATGGGTGGGTGTAGAAAATCAAGCTTGAGACAAAATCCTTGTATGGTTTTCCACATAAGCTTTTCGAGAAAAATTAAATTAAAATCATCCGCGCACCTTACGCTGTCCAGGTTTCAGCGATTCACTATAAATCAACTGACATTTACTAGTGTTATAATCAACTCATCCGCGAAACTGAACATTGAAAACCAAATACAGACTGATTTTCCAGCCCCCGCC # Right flank : TTTCTATATCTTTTTCTTCTTTCTTACCTTTGCGTCCTTTGCGTTCTTGGCGGTTCGTTTCCATATCTATGTTTTTCACGACTTATTTAGGATTGCTATAGGTGTTTAATGAGTGTATCTTTTTGGCAATCTAATTGTAACTTTAGTTCCCTTTTCTTCTTGACTAGATAAACTAATATTCCCACCATGTAACTCTACACAAGCTTTAGTAATTACTAAACCCAAACCTGTTCCTTGTATGGTGTCAACATTACTACCCCGACTAAAAGATTTAAACAGATTTTCTTGATCTACGAGAGGAATACCAATGCCTTCGTCTTGAATTTCGATAAATATTTCTGATTCTTTACCATTGAGATAAACGATAACATTACCACCATCAGGAGAATACTTGATGGCATTAGATAATAAGTTTAAAAATATTTGGCGCAAAAGTCCGCGATCGCCCCAAAAGTTTTGATAATTGCCTGTCACTTGTAAAATGATTTCATGGCGATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 386-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000071.1 Anabaena sp. FACHB-83 contig71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 386 37 100.0 35 ..................................... TTGTGATCGCATCTCTAACAACTCCATCACATAAC 458 37 100.0 35 ..................................... TCCAAGCTCCTCATCTTTCCCTTTAGGGTCGATTA 530 37 100.0 36 ..................................... ATGAGTTGTTCTATGCGATCGCTGAACCTCAGTACA 603 37 100.0 36 ..................................... TCGTCCCGGACGATTGCTATATAATCCTCATCAAGA 676 37 100.0 38 ..................................... ACGCCATACGCTCTTGCGGCAACCTGTAGCGCCGATGG 751 37 100.0 35 ..................................... AACACGGTTTTTCAAGGTAACAAGACTTGGTGTGA 823 37 100.0 37 ..................................... ACCCTTTGTCCGGGGGTTGGGTATTCCTCGTATCTGG 897 37 97.3 37 ..............C...................... TTACGCTGTAAAGAAACTAAGATTTTAGGCTTATTTG 971 37 97.3 36 ..............C...................... TCAGAGAGACTGATATTAATGACTTAGAAAAATTAA 1044 37 81.1 0 .........GA.C........TA.C....G....... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 97.6 36 GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Left flank : ATCTTTTTTACGCAATTTTGCTCCAACTACAACAGAAATGGTTGATAAACTAATCTCAGTTGCACTCGACTTAATAAATCCTCAACATTTAAGAAACTGGTTTGCTAGTTGCTGCTACTGTACCTCATAACAGCCGTAGGTGCTGTATAGATAGTCATCTTATGATTGGGTAATCAGCTTGATGATTGTCGAGTCAAAGCGAGGTAAAAAACCCTGGGGACTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAACAATTAGGGAAGTTGAGAATTAGTTGCAATAATAGCGGCTGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCTTCGAGCAG # Right flank : CAAATATAGAAAAGTGTTAATCTTCATTTAGAGTACTGAAGGATGGAAACAGCGTTCTACTTTTATTCAATAGAATAGTTTTCATAAGCTTTTTTATGAGCATTTTTAATTTGTTTAGCTATCCAAGGTGGATCTAAAACAGTAGCACTAGCACCATATTGTAATATTCGTTGGTGAAACCAGAATATATAGTCTTCTTGAGTCAGAATATCAACGTAGGCTGTGTTTTCTGGGGATGAGATAATTTTTTCATGAGGTCGGCGAGGTTTATAGGTAGCTAAAGCACCTGTTAGCCGATAGGTGACATCTATAGTAGGAAATTTAGTGTAAGTCCAAGGTGTATAAGAGGCTGCACCAACTCGGACAAGGCGATCTATTCTAAAAGCACAATTCTGTTCAACATTGGGTTTAGTGGAAATATTCCAGCTATGCCAATCGGGAACTAAGCCAAATAAATATAATGAACCATTGTGTAATCTTAGTTCTGATTTGTCTAAATC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : GTTTCCAAACCCAACTACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 12849-14295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000071.1 Anabaena sp. FACHB-83 contig71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 12849 37 100.0 36 ..................................... TATATTATATGTTCATTGTAGCATTGTTTCTGTCGG 12922 37 100.0 36 ..................................... ATTTAGAAGACCAACTTCTAAAATCTCTAACTTATT 12995 37 100.0 34 ..................................... ACTGAAATCATGCTTTCACTATCCGAACTAAAAA 13066 37 100.0 37 ..................................... AATTCCACAGGAGATCCGTTCATCAACACGGTATAAT 13140 37 97.3 36 ............................A........ TTTATTTCACCAAGTGTATCTGGTCTGTGGCAGACA 13213 37 100.0 38 ..................................... TCTACTATTGGTGTCAAATCTAGAACTTGATTCTTCAA 13288 37 100.0 39 ..................................... TTAAATGGATTTCCTCTAGCAGTTCCAACAAAGAAGGAA 13364 37 100.0 40 ..................................... AAACTATATTCTTTAATGACTCAAAATTATGTAGTTTTTG 13441 37 100.0 36 ..................................... TGCCAACCGTCCCTTAATAAACTTCTCTTCTACAGT 13514 37 100.0 40 ..................................... CTCCCCAACCCACAGAAGAACAAGCATGGGAAGCTGCCGA 13591 37 100.0 37 ..................................... ATATAATCACATTAGCCCAAACAGGTGTATTACTCAG 13665 37 100.0 40 ..................................... CTGGTTGTCTTGTCACCCGCTCCCGCGCCAACCATCAAAA 13742 37 100.0 36 ..................................... CAGATATTTGGCAATCAGGTCAGCGTATGGCTGATT 13815 37 100.0 37 ..................................... GCAACTACAGAACATTGTTCAGCACAATTAGCTTTAT 13889 37 100.0 35 ..................................... GATGGTAAAGATTCCGCTAAAAAATCGAGGGCAGA 13961 37 100.0 42 ..................................... ATTCAATTGGATCGGGATTAAACACGATTGGAACTGCTGGTG 14040 37 100.0 36 ..................................... GCGCAGCCCAAAGCCAACGACAAGCGATCGCGCAAG 14113 37 100.0 38 ..................................... AAAAGTCTTGTCTACCAAATAAAACAGATTACTGGCAA 14188 37 100.0 34 ..................................... CTTGAGCGTGATGCCAGAACCGGAGTAGAAGAAG 14259 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 99.9 37 GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Left flank : CTAATTATTTATGATCTGCCAGATAACAAAGCAGCTAACAAACGTCGCACTCGTTTACACAAATTGTTGTCTGGCTATGGTAAATGGACTCAATACAGTGTATTCGAGTGCTTCTTAACAAACGTTCAATTTGCTACACTACAGACCAAAATAGAAAAATTAGTCAAGCCAGAAGAAGATGCTGTACGAATATACGTGCTTGATGCAGGTGCAGTGAGAAGAACCATCACGTATGGTTCGGAAATTCCTCGACAAGAGCAAACAATCGTCTTATGATAGATGAAGGTATCGACTTGATGATTGTCGAGTCAAAGCGGGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAAAATAATAGTTATAGCGTTTCATAAAATGGGAAAGCTGCAAATAATTTGCAATAAGAGAGGCTGAAAATGACCAAAATTTTCGACTCGTCAAATCGCTTCCCAGGAGGCTTGCCCTGTAATAGTTTCAGAACCGGGCG # Right flank : CCACTCACGATGCTCTCTCCACTTCTATTGGTTGACGGGTTTCCAAACCTGATTACCCCTGCTAAACTCAGCGATCACTTAATTCACCTTCCTCCATCGCCCGTCCCAAACTTTTCCCAAAGGGGGATGAAATCACCTAAAATATTCAACATTCTTTGACTCCCATCAAACGATGCCCAGAGCAGCCACAGCCCCCAAGCGCAAGCCTAGAGCCAAACCAACCCCAAAGAACTCACTTCCAACATGGGCAGATGACACTGAATTAGTGGGGTTAGTGTTTGATTTGGAGGCAACAGCAACGGCTTCTCTTTACTCGCAGTACACGATAGGACTCCACGCTTGGTTTCTCGACCAAGTGCGACAAGTTCACCCCGATTTATCTGCCTACCTCCACGATGGCGAATCAGAAAAAGCCTTCAGTATCTCAGCACTGGAAGGTCAACTGTTCCCTAGCGGCAAGCAACTGAAACTAGTCGCTAACCAAATCTATCACTGGCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 47132-46663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000008.1 Anabaena sp. FACHB-83 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 47131 36 100.0 37 .................................... TCGTGGTCTACTATGATCACTAACATGCGATCGCAGT 47058 36 100.0 35 .................................... AAAGTATCTAAATCAAGTATTTGCCTATTAGAGGA 46987 36 100.0 37 .................................... CAGCATGGTGTGGCTGATAAGGGCGATACTCTAGGTA 46914 36 100.0 38 .................................... TTGAAAGTCTGAGATTCTACGTTAATTTGAATGTTTAA 46840 36 100.0 34 .................................... TTTTAGAAGGTGTTAATAGCGAGCTAAAATCTGG 46770 36 100.0 36 .................................... CAGATCCACGAAATTTTTAAGGTGACAATGGACAAG 46698 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 99.6 36 CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : AGCTTACAACTTACTTCAAGGATATGGCGAAAGGATGCAATATTCTATTTTCCGTTCTTGGTTGACCATGCGATCGCGTGAAAAATTACGTTGGGAACTGGAAAAAATTCTCGCCCCAGAAGACAGTCTATTATTAATTCGGCTGTCCAATCAGTGCGTTAATTCTATTCCGGCTTACAATCGTCCCGGCGCTTGGACAACTCAAGAAGAACCTTACCGGATTGTCTAAAAACATGGATCTGAGTTTGTGGAACATGAAATAGAACTCAAGCAGGATAAAAACCTTACTGGGCTTGCTTTTGAGCTTTTTTAGGTGAACAGGAGGTGCTTGCATTTTTTTGCGTGAGGTCAAAACCTAGTCCTGGTAAGCGTTCTAAGTTGAGACGGAAACTTGAAAGTTTAACTTTTGGTAAGCAATTGACTTCTTTTGTTGCTTTTTTACTTAGATGCTTGCAAAATAGCAACTGAGTGGTCTGATGACATGGGTTTGAGCGATCGCT # Right flank : GACAATAACTATCAACTGTCAACGAAACTTTTTGTAATTAGTCTTGTCTATAAAACTAATTGATTAGTTTATCAGGAATATATATGCGATCGCCTATCGTAATCGGTACAGGATTACTTGTATCTATAATTTTAAATACCCAAGTATTTGCAAAATCTACAGTCAATTTACCACAAATCACTGCCCAGAATTCTCAGCAACAAATATTAAATCAAAATAATCAAAAGACAAACTCAGGGCTGATTACTCTGCAAAGAACAGCCTGCTATGGTACTTGTCCCATTTATAAAATTACCATCTTTCCTGATGGGAGAGTTGTCTACGAAGGGGAGCGTTTTGTAAAAGTTGTAGGTAAAAGAACTGCCAGAATTAGTCCCCAAGCAGTAAGAAGATTAGTTGCAGAATTTAATAAAGTAAACTATTTTTCATTAGCAAATAGCTACCAAGGCGGAAGGACAGATGCGCCTTCTGCAATTACTTCTTTAACTATCGGTAAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 56754-56038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRY010000008.1 Anabaena sp. FACHB-83 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================= ================== 56753 36 100.0 36 .................................... CTTTAGCACCCATTCTCGCCTAGCATCATCCTCTTT 56681 36 100.0 36 .................................... CGTATTCTTTGCGCTTTCTTTCCCACGATCCATTAC 56609 36 100.0 35 .................................... ATAGTTTCGCTTTAGTTCATGAGTTTTCCCTTGTC 56538 36 100.0 36 .................................... TTTGACTGCCGCTTTTTTACCGCAAAAACCATCGAG 56466 36 100.0 35 .................................... AGGAAGAAGCTCTTCTAGATCGTGCAATAAACTGA 56395 36 100.0 36 .................................... ATCACTAACATGCGATCGCAGTTCAAACTACAAACA 56323 36 100.0 39 .................................... GTCTCTTTCTATTGTCATTCCTCTGACATCTGATGATTC 56248 36 100.0 37 .................................... GATCTACAATAAGCTCAGATCAGGAGTGCTTAATAAT 56175 36 97.2 65 .......................G............ TTTCACGGTCTGAAAGTTGAACACTTGTAAGTGCTGAAGGGCAGATGGGAACAACATAACCCTAC 56074 36 83.3 0 ...C........A.......GA..........A..T | T [56069] ========== ====== ====== ====== ==================================== ================================================================= ================== 10 36 98.0 40 CTGACTAAACCTTTGATGCCATTAGGCGTTGATCAC # Left flank : CATGAACGCGAAGGTCGTTGGTGGTGGGAAGAGTCTACTGCTAAAGAGTGTGGTCTACACTTAGGGAATTTACAAAAATAGGACTTACGCACCAAAATTATCTGTGAAAAATGGGTATAGGGTGTAAGGTTTTTGGATACATACACTCCTATACCCCTACACCAATAACTAGCTACCCAACTTTTTAGCCTTTCATCACTATATTCACAATTCACATCTTGCAGCTGTTTTGCATGGATCTACGACTGTGCCTTTCAAAAACCAATCAAAAAATCATATAACTGTTGTCAGTGCTGACTTCCAAGGTTTTCACATCACTTGAAGGTGCTTGCATTTTATTTTAAGAGCTTGAAATCTAGATGATACAAGGTTTCCAAGATTAGCATCTGTTCAAAAAAATGAGACTTAGGTAAAAATTTGTTTTCTGTATTGCTCCTGGGTGCTAGGTGCTTGTAATATCAAATCTCAGGGCAGACAGGATATGGATTTCCGAGTGCGCT # Right flank : AGCCGTAAGAATAACGTGAGTTCGATGAACCTCACCCCAACCCCTCTCCGAAGCGGAGAGGGGCTTAAAGATAAACGCAAAATTAAGCATTTAAAGCCTCTCTTCTGCAAGGAGAGAGGTTTGGAGAGGGGTTTTTTCAATCCGTCTAACTCAGATTAAAAATAACTTGACACAAAGCTATAATTTTGTTATGACTCTATTATTGCTATGTTTCAAGGTCTAAAAAGCAAGCGAAACTACAACTTAATAATCGCTCGAAGTACTACGTCTTGTACGTTCTTAATCACTACCTCAGATACCGCAAGGTTTTGAACATATTAAATATTTAAAGTTTGTTATCTAGGGAGCGTCTTAAAATGATTGCATCTGTAGGCTTTTTTGCATCCCAAAATGCGGGTAGTGAGCTTGAGCCTTTTGTTGAACTACGCTTTCCAGTGCGGGGTAACTATGCACCTGCTGACCAGAATTATGCTCTCTTTGCAGCGTGTGTTCACGTTATT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGACTAAACCTTTGATGCCATTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //