Array 1 33-1980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAQ010000076.1 Pseudomonas sp. BIS1 contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 93 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 153 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 213 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 273 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 333 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 393 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 453 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 513 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 573 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 633 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 693 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 753 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 813 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 873 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 933 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 993 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 1053 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 1113 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 1173 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1233 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 1293 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1353 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 1413 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 1473 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 1533 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 1593 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1653 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1713 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1773 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 1833 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 1893 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1953 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACTCTGCGCCTCGACGTCGGGATCTACGAAAAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11793-10505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAQ010000076.1 Pseudomonas sp. BIS1 contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11792 28 100.0 32 ............................ CCGAGTGGGCCGAGCGCGCCATCGATGGTACT 11732 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 11672 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 11612 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 11552 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 11492 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 11432 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 11372 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 11312 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 11252 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 11192 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 11132 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 11072 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 11012 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 10952 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 10892 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 10832 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 10772 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 10712 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 10652 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 10592 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 10532 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //