Array 1 177990-178470 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHM01000003.1 Listeria monocytogenes strain FSL L7-1035 NODE_3_length_381255_cov_30.252829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 177990 29 100.0 34 ............................. GATCATTTCGGCAAGTGTCCCAGCGGCTGACAGA 178053 29 100.0 35 ............................. TTAAAAAAGGGTCGTCTGCAAAATCAATTATTCAA 178117 29 100.0 34 ............................. ATTGATGCCATAATCGGTTCTAACAACGGCATTC 178180 29 100.0 37 ............................. CAAAGAATGAGAATCTCACAAGTTGAAGAACTTTCGA 178246 29 96.6 36 ..............A.............. TCGTGTGCTATTTGCGAGTCTGTAAGTGAGTATTCT 178311 29 96.6 36 ..............A.............. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 178376 29 93.1 37 A.............A.............. GAAAAAGCACTTTTCAGCACTCGTTCGTTTTCTTTTT 178442 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 96.1 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTTGGGAAATCTTCAGGATAAGGCGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCAGTAAGAGAAGCGTCTGTTTCTTTCAAATCTTCATTAAATTTGCCGTAGCCCATGCTGATGATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 194075-195985 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHM01000003.1 Listeria monocytogenes strain FSL L7-1035 NODE_3_length_381255_cov_30.252829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 194075 29 100.0 37 ............................. TATACCTAGAACCTCCTTCCACACATTGGACAGAAAC 194141 29 100.0 38 ............................. AAATGTTCCGGAGGAGGCAGCAGCAATTGCAGCTCATA 194208 29 100.0 37 ............................. TTATCATACGCTCCATCTTCCTTTACTGCTGGTATTT 194274 29 100.0 35 ............................. AAAAGTGGATTTATTGCTACTCAACCACTTGTTGC 194338 29 100.0 37 ............................. CTTCAATGGTTTTTAGAACAAGCGAAGGAACACCGCA 194404 29 100.0 35 ............................. ACGTTCCATATATATTTCAACATCGCTTTCGTTTT 194468 29 100.0 34 ............................. GAAAGCTCGCAAATAATCTTCGGCGATAAAATGC 194531 29 100.0 37 ............................. GAACATATTGATGGTTTTGTTGCGATGCTTGTTGGAC 194597 29 96.6 35 .......................A..... TGTGGACGCGCATTCGTTTGTTGGCACGCGCGGTG 194661 29 96.6 34 A............................ AATGAAGGACGCGCGAGATTCGGAGCGCCTCCGG 194724 29 100.0 36 ............................. ACAATTCAGTTTCACTATTAACAAAGCGCTAATCGA 194789 29 100.0 35 ............................. TCAACATCTAAAAATTGAGCATCGTCAAGTGCATC 194853 29 100.0 36 ............................. TTTTTTAGCACTTCATATAACTTAATCGTGATGTTT 194918 29 100.0 36 ............................. ACAATCGACGGATAATACTTAGGGCATAGCCGCCAC 194983 29 100.0 35 ............................. TACAGCATGAGCTGGCTATTCTCTTCTGCTGAAAC 195047 29 100.0 36 ............................. CCAGAACAACATGCGGATGAACTTGAAGAGCATCGC 195112 29 100.0 34 ............................. GTGTTAGTTAAAAGAGCAACGGCACAGGGTCATA 195175 29 100.0 40 ............................. ATAGATGCGCTTATTGGCTCTAATAACGGCATTCAGAACC 195244 29 100.0 37 ............................. CCTCAAAAAAGTATTTTTCAATTGAAGGGTAGCGTTT 195310 29 100.0 36 ............................. GAAAGCACCTATTTATTCGCACATGAATTTAGTAAC 195375 29 100.0 37 ............................. AAGATAAATTAATTGCAGCGAGCCCCTTTCGCGAAGA 195441 29 100.0 37 ............................. AGTCTAAGAAGGATGAGTCAGGAGAAGAAGAGGTCAC 195507 29 100.0 34 ............................. ACAATATGAAAAGTCCGGTTTTGAAAGGTTGAAA 195570 29 100.0 36 ............................. GTTTACTGACTTCTTCAACGGGAACCCCTTCCGCGT 195635 29 100.0 34 ............................. CGGGCAGTACAGGTGTACAAATAAATTCTGTTGA 195698 29 100.0 36 ............................. TTAGCTTCTTCTAACTCTTTTTCTAGTTCTTCAATT 195763 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 195826 29 96.6 36 .........................G... TGTCTAAATATTCGACTTTAAACGGAATTTCCGTTT 195891 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 195956 29 93.1 0 .......................A....C | C [195979] ========== ====== ====== ====== ============================= ======================================== ================== 30 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCCAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAATTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGCACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //