Array 1 83035-79263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================== ================== 83034 28 75.0 114 .G......GT..A..A.....C..A... TCTCCGCTCGAAGGCCAGCACATACGCAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCA AA [83015] 82890 28 100.0 34 ............................ TCCGGATGGACAGGACCTGCTCTCGGCACGCGGG 82828 28 100.0 33 ............................ CGCCTTCTGCGTGGCCTTCGCGTCGAGGCCTGC 82767 28 100.0 33 ............................ GCTGCCCGTCGCGCTGACGGTGCCTGCCGCCGA 82706 28 100.0 33 ............................ CTACCGGGTCATCGGGCAGCAGGCACGCCGGTC 82645 28 100.0 34 ............................ GCCCTTCGTCCACGGAGACGCGGCGCGGCCGAGA 82583 28 100.0 33 ............................ CGGCGCAGTCATCAACGTCGTCGAGAACACTCC 82522 28 100.0 33 ............................ GTACATCTCCAAGGTGCAGGGCACCGACGTGGC 82461 28 100.0 33 ............................ GCGCACGCCACCCTGGCGCTCGCCGCCGCAACA 82400 28 100.0 33 ............................ CACCGGCCCCGGAATGTGCTGAGGTGATCTCAG 82339 28 100.0 33 ............................ CTTGGGGTGATCGGGCGTCCGACTGCCCAAAAG 82278 28 100.0 33 ............................ CCGGCCTCCCACCTGCGGATACAGCAGGAGGGA 82217 28 100.0 33 ............................ CGGCAGCAAGGGCCGGCTGCGGCGGGGTGAGCG 82156 28 100.0 33 ............................ GGTCTCCCAGCCGGGCGTCGCGATCGTGGACCT 82095 28 100.0 33 ............................ GCGGGCCGGAGAGGCCCCCAGCACCTGACCGAC 82034 28 100.0 33 ............................ GGGATGAGCCGCCAGCAGGTGTACCCGGGCCTC 81973 28 100.0 33 ............................ CGCGGCGTGCGGGGACGTGCCATGCATCGCCTC 81912 28 100.0 33 ............................ GCGCGACAGGCACCGTCGCCGGCGGATCTGTAC 81851 28 100.0 33 ............................ GGGCATCGTCGGAGTCGACGCGCTCGGCGAGGT 81790 28 100.0 33 ............................ CCCGGCGGCGATCCGGCCGACGGTCCCCGACCC 81729 28 100.0 33 ............................ GCCGCTCACCGCCGACGAGGCGGACCTGCTCCG 81668 28 100.0 33 ............................ GGCGCTCGACCAGGCGCCGCTCCTCGGCGGACA 81607 28 100.0 33 ............................ TCCGGCCGCGTCCACCTCACCGCGCTGGCGGAA 81546 28 100.0 33 ............................ CGCGTTCCGCCAGCACCAGGCCGACCAGCCGTT 81485 28 100.0 33 ............................ CAGCTCGGCGAGCGGGCTGGCGGCCTTGCCGGA 81424 28 100.0 33 ............................ GGCCGAGGAGGACGACCTGGCCGCCGCGAGGAC 81363 28 100.0 33 ............................ CCTCTCTCCGGCTCTGCGGAGAGAGGTGTCGGC 81302 28 100.0 33 ............................ CCGTTTGGCAACGCCACCCGCCGAGCGATGCGC 81241 28 100.0 33 ............................ GTGGTGGAGGGGCGCCCTCGGGGCGGCCGGTTG 81180 28 100.0 33 ............................ CTTTCGATGAAGGAGCCGGTACCGAGGCGGCTG 81119 28 100.0 33 ............................ ACCCCTCGCCCCGGAATTGACGTGTCATAGGGG 81058 28 100.0 33 ............................ GCAGGCGGCGGCTCTGCTGGCTGCTGGTGCGGA 80997 28 100.0 33 ............................ GACCGTGGTCTTCAGCCACCTGGCCCACCAGAT 80936 28 100.0 33 ............................ CCGCCGGGACTCGGCGGAGAGGTGGCTGTACGT 80875 28 100.0 33 ............................ GGTAGTGCCCAGTGGGCCCCATAGGCGCACCCA 80814 28 100.0 33 ............................ CGGCGTCCGGGCCAGCGCGCAGGTGGGCGCCAA 80753 28 100.0 33 ............................ GCCGTCGGTGTCCAGCTCGTACGTGGGGAGCCT 80692 28 100.0 33 ............................ CGTGCACGCGTTCGTCCGGCTCACCTGGTGGCA 80631 28 100.0 33 ............................ GCCCGCCCCCGGGCCTCCCACGCTCTCCCTGGC 80570 28 100.0 33 ............................ CCGCACCCACGACGTGCAGATGGCCGACCGCTC 80509 28 100.0 33 ............................ CGGGCTCGGGCGTTCACAGCTCCTCCTCGGGGG 80448 28 100.0 33 ............................ CAGCGAGGGCGGGCAGTCGAGGAGGGTGTAGTC 80387 28 100.0 33 ............................ GCTGGCTTCAGGCGCCCTCGTTGGGGCGGCTGG 80326 28 100.0 33 ............................ CTGGCCGGGTGTGGTGCGGTGATGGGGGATGGG 80265 28 100.0 33 ............................ GTACGCCGGGCTGTCCTCGGTGTCCATCTGGGG 80204 28 100.0 33 ............................ CGCGGAGAACATGGGCTGCACCCGCACCATGAA 80143 28 100.0 33 ............................ GGGCTGGGACCGTAAGGATTCCCGCCTCGCGGA 80082 28 100.0 32 ............................ GGCCGAGCACATCCCGCCCCTCTCCCGAGCGG 80022 28 100.0 33 ............................ CGGGGGAGAGGTGGACGGGCATATGCCGCTCGT 79961 28 100.0 33 ............................ CTGTGCGGACAGCACGTCCAGCTCCTCGCCCGC 79900 28 100.0 33 ............................ CTGCCGCACATCCGGACACTGGTCGCCGAGGGC 79839 28 96.4 33 ..............C............. CTCTTGACGCCCGGCTTGGCGGGGCCGGCCAGT 79778 28 96.4 33 ......................C..... GAAGGGAAAAAAGTTTCCCGACCCTGACCCCAA 79717 28 100.0 34 ............................ GGCCACGTAGGCGGCCCTCGGCGCGGGCGTCGGC 79655 28 100.0 34 ............................ GGACCTGGTGCCCGACCTCGTCTCGGCCCTGGAG 79593 28 96.4 33 ......................C..... CAGCCACTACAACTACCGGGACACCGCCGCCTT 79532 28 92.9 33 ...................A...G.... TCTTCGCGGGAAACGGGTGCGGGCGAACTGCCC 79471 28 100.0 33 ............................ GGCGCGGCCCACCTGGTCGCGCGTCACTCGGTC 79410 28 92.9 33 ......................CG.... GAGGTCATCCGCGACGGCGGCCGGACGTTCGCC 79349 27 85.7 32 .....T.T........-......G.... GCGCGCCACGCAGGACCACTGGCGCACCTGTT 79290 28 92.9 0 ..............C........G.... | ========== ====== ====== ====== ============================ ================================================================================================================== ================== 61 28 98.8 34 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : ACCGCATCGCCGACACCAAACTCCTCTCACGCATCGTCACCGACGTTAAAGCCCTCCTCAATCCCCCCGGTACCGACTTCGACACGCCAGAGACGAGCGCTCTCTGGGACGAGCACGTCGGCACAGTCGCCGCAGGCACCAACTGGTCCGCACAAGACACTCATCCGGCCACCCGCTCACACCATGACCTCTCGCCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTGCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTCTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCT # Right flank : CTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAGCTTTGGGTGATCGAGCGGCCGACTGCCCGAAAGTCGACCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGGGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93204-94416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 93204 28 100.0 33 ............................ CACGATGGAGCTGGCGGCCGGCTCCGTGGATGA 93265 28 100.0 33 ............................ CACGATGGAGCTGGCGGCCGGCTCCGTGGATGA 93326 28 100.0 33 ............................ CTCGCCCTCCCCGGGTCCGGCGGGCACCGGGGA 93387 28 100.0 33 ............................ TGACCGCCACCAGCGAGGCGCTGATGCGTGAGT 93448 28 100.0 33 ............................ GACCGACGAGGCCGCGACGGCCGCATTGAACGC 93509 27 96.4 33 ....................-....... GCTTCCTCAGCACGAACCGGCGCCTGTACGACG 93569 28 100.0 33 ............................ TCAGGCCGGATGCTTGGCGAGCCAGTCGCGTAG 93630 28 100.0 33 ............................ GCAGCAGCCCGAGGGTGACCGCGAGGGCCTGGT 93691 28 100.0 33 ............................ CGTCATGGCGTCGAGCCAGGCCGCCGCCTGCTT 93752 28 100.0 33 ............................ CGTCATGGCGTCGAGCCAGGCCGCCGCCTGCTT 93813 28 100.0 33 ............................ CCCCGCCGAGAGCACGGAGGCGGTCTGGCGGCC 93874 28 100.0 33 ............................ GCTGACCGAGGGCACCTACCCGCAGCACGAGGC 93935 28 100.0 33 ............................ CCAGCCGCCGCGGGACGCCTGGTAGGTCGTCTC 93996 28 100.0 33 ............................ TTCCCGCCCCTCGACCGCCCCGAGGACGAGGAG 94057 28 100.0 33 ............................ GCGTCCTGGGCCGCCACCCTCGACAGCTACGGC 94118 28 100.0 33 ............................ GGGAGCCATCCTGTGATCCGCCTGCCTACCAGC 94179 28 100.0 33 ............................ CCGTTCGCTGCTCTACGACGCGCTTTCGCTTCT 94240 28 100.0 33 ............................ GCCGGGGCCGTGGGGCTGGTCGCTGACAATGGT 94301 28 92.9 58 .............T.......G...... CCAGCGGCGGGCGGCGAAGAAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 94387 28 89.3 0 ....................A.C...G. | CA [94407] ========== ====== ====== ====== ============================ ========================================================== ================== 20 28 98.9 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGACACCTCATCCAGCAGGCCCCGCGTCGAAGGGGCAAGGAAGCAGTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGATGCGACAGAAGAAGATTCGTCTGCCCACCGGCAGGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CAACAGGGCTCTGGGTGGGTATGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCATAACTGATCGTTTCAGAATGAGGTTCGCAGGCGGCGGAGGCATATGAGGCTGCAGGCCAGTTCGAGCAGGCCCTGGTGGAGATCGGCGCGTCGCTCGTAGCGGATGCGGAGCCGTTTGGACTGGTGCAGCCAGGCGAAGGCGCGCTCGACCACCCAGCGCACCTTGCCCAGTCCTGAGCCGTGGGCGACACCGCGTCGGGCGATCACCGGTTTAACGCCGCGCTTCCACAGCAGGCGACGGTACTTGTCGAAGTCGTAGCCCCGGTCGGCATACAGACGCCGGGGTTTTCGGCGGGGGCGTCCTCGCAGACCCCGGATCGGTGGGACCGCGTCCAGCAGAGGCAGAAGCTGGGTGACGTCGTGCCGGTTGCCGCCGGTGAGTGTGACGGCCAGCGGAGTTCCGTGGCGGTCGACGATCACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 97674-98433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97674 28 100.0 33 ............................ GCGCGCTGTGCCGAAGTGGGAGCAGCTCGCCCG 97735 28 100.0 33 ............................ GTCCCCGGGCTCCAGGGCCGAGACGAGGTCGGG 97796 28 100.0 33 ............................ GCGCGCTGTGCCGAAGTGGGAGCAGCTCGCCCG 97857 28 100.0 33 ............................ GTACGGCGGCTACAGCTTCGTGGACGACGCCAA 97918 28 100.0 33 ............................ CCTGTTCCGGGGCTCGCTCTCCACCGCCATGGG 97979 28 96.4 33 .......T.................... CCCGGCCGCGTCTGCTGGACGCGTTCTGCTGCC 98040 28 100.0 33 ............................ GGGATACGCCGACGTGGCGGCTCATTTCCGAGA 98101 28 96.4 33 .......................A.... GCACATTGCGGCCGGGAGGCTCGCACGGGTGTC 98162 28 100.0 33 ............................ GCTGACGGCGGTGCTGACCAAGGCCGGCGCCAT 98223 28 100.0 33 ............................ CAAGCTGGTGCGGCTCTCGCCGCTCGTTCCGCT 98284 28 100.0 33 ............................ AGAGACGGCGGCCGCCCTGACGTCCGGGCTCCA 98345 28 100.0 33 ............................ CACCTCCGGCGCCGGGCCGGGGGCCACCACCAG 98406 28 85.7 0 ................T....CGC.... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ACCAGTCCAAACGGCTCCGCATCCGCTACGAGCGACGCGCCGATCTCCACCAGGGCCTGCTCGAACTGGCCTGCAGCCTCATATGCCTCCGCCGCCTGCGAACCTCATTCTGAAACGATCAGTTATGGCGTCGGCCGACTGCCGAAAGTCTCAAGCTGGTGCCGCCGTATCCGGTGGCAGACGACCATCCGCGCACCGGCGGTCTACGGGCGACCGCTGTCCCCGCCCCGTTGGCGGGGCCATGCTGGTGGGCCAGTCGGGCACGGTGCCAGCAGAACCAGCAGCCACCTCAGCGAGACGACCGGGCACGCACCGTACGGGGATTTGGCAGGTGTGACCCCCTCCGGTTCCGTACGGTAGGCGAGTCTCTCGCGGAGCTCGCGTACGTCGCGATCTCTGAAGACGGCCCCCGCCATTCGCTGCCCGACGCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGTGT # Right flank : CTCGGCATCCGTACGCCCCCTACCGCCCCAGCCTGGCCCGACGCACTATGGCTCTCCCGGCACACCCGCCGGTCCAAGGGGAGGGGTGGCCATGAACTGTCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCCGCCCACCGCGCCGGTAGCCTCACCGCATGAGTAGGCCACCAGAGATCACCCGCACCGAGTGCCGCCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGCGGCTGGGTCAACCCTTGGTACGAGGGGCACGGCGAGCTGCCCACTGCCAAGGACGACCCCGACTACCCGCGTCGTAGAAACGCCCGCTGACCTACAGCAGGCCGAGGTCCGTGTCCGGCCGGCACATACTGCAGGCCTCCACGTCGACGAGGGCCTGCCGGGCCTGCTCGGTGTCGAGCGGCCGGACGCGGGACCCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 99540-101516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99540 28 100.0 33 ............................ CTCCTTGCGCAGCTGCTCTTCGTTCGTCATGTG 99601 28 100.0 33 ............................ CGGCTGCCGAGGCAGACGGACGTGGTGACGTGG 99662 28 100.0 33 ............................ CGAACTACCCCGCCACGCTCGGGTCGGTGGCGG 99723 28 100.0 33 ............................ CTAGTTGGTTCTTCATCTACCGGTAGTAGTGGG 99784 28 100.0 33 ............................ CCGTCCTCCTGGTCCGGCCCGGAGCACCCAGGT 99845 28 100.0 33 ............................ CCGCGTCGCGGATCTCCAGCTGTTCGGGGCGGG 99906 28 100.0 33 ............................ ACTTGAGTACCAAAGTTGCCCGCCCTCAGAACG 99967 28 96.4 33 .............A.............. GGTGACCGGCGCGCTCGGCCTCGGCACCATCGA 100028 28 100.0 33 ............................ CCGGAGGTGGGCCGCGTCGACCTGGACGCATCG 100089 28 100.0 33 ............................ CGCGTCCGCGCGCAGCTCAACGGCGCGGAGGCA 100150 28 100.0 33 ............................ CCCAGACGCGGCGCGGCGGGCTGCGCACCCTCT 100211 28 100.0 33 ............................ GTCGCTACTGACCGCTGTCAACCTCGATGCGCC 100272 28 100.0 33 ............................ GCGTATACGTGAACGCTTGTGATGGCGAGTGTT 100333 28 100.0 33 ............................ GCATTCACCGAGGGCACCGACGAGCACGAGCGC 100394 28 100.0 33 ............................ CTGCTGTGGCGATCTGCTGCGGGACGGCGGGCG 100455 28 100.0 33 ............................ GTCGCCTCCGCGTCGAGCGCGACGGGCTCGACC 100516 28 100.0 33 ............................ GCAGACGATGGAGCGCTACGCGCTGATCGCGGC 100577 28 100.0 33 ............................ GAGCGTCACCCTGCCCGCGCTCATCGCCGGCGA 100638 28 96.4 33 .............G.............. CCGCCGTGCCGACCGCCCACCGGGGGACGATCG 100699 28 96.4 33 .............G.............. CTTGGCGTGCTCGGCAACAAGCACGTACCGGCG 100760 28 96.4 33 .............G.............. ATGCCCGTGATCTTCCGTGGCTGACGGGCGGGG 100821 28 96.4 33 .............G.............. CGTGCCGACGACCCCGTACCACCTCGAGGCGTA 100882 28 100.0 33 ............................ CCTCCTCCAGTGCCTGGCCGCCCGAGACTCGGC 100943 28 100.0 33 ............................ GGAGCGGGAGGCGGCCGACCTTCGCCGCGCCCG 101004 28 100.0 33 ............................ GCGCCGGGGCCAGGCCGACTACGACGTCGCCGC 101065 28 96.4 33 .............G.............. GTGCTCGCGGCGCATGCCGCCCCGGGAGTACGG 101126 28 100.0 33 ............................ CCCTGACCCCGAACACCACCGAAGCACCGGACA 101187 28 100.0 33 ............................ GGCCGGCCGGGACGTGGCCTACAACAAGCCGGT 101248 28 100.0 33 ............................ GGCCGGCCGGGACGTGGCCTACAACAAGCCGGT 101309 28 100.0 33 ............................ GGCGCCGTGCGCTCCGCCGGTAGCGCGGGCGGG 101370 28 96.4 33 ...................A........ GGTGGCTGACAAGGCCGCGCGGTCCCACGCGGC 101431 28 100.0 29 ............................ TGCCGACCGACCGAGATCGTCAGCGAGGG 101488 28 71.4 0 C.......A..G..ATT..T.....C.. | T [101501] ========== ====== ====== ====== ============================ ================================= ================== 33 28 98.4 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : TCGGCCTCCCGCTGCTCGGCCGCCGCGATCGCCGCGTCGATCCGGGCCAGCCACATCGCGTGCCACGTCCGCAGCACGTGCAGGCGCGGCAGGTCGGCGGGCAGATCGGACATGCGTTCGAGTCTAGATATGTTGGTGTCGGCGGCGTGCGGCACCCCCCCTGCTTGACTTCGAAACGCCGCCTTCGCCTTCCCCTCCCCTATCAATCCGCCCGGCCTGGTACCGGGGCCGCATCGCCTGCATGGAAATCTCGCTCGCCACGATCCTCGCCCTGGCACTCTGCGGCCGGCGGGCCCACTGGGTACTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTATGGACCGAGGACGACGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGGGCCCTCGCCGCACCTCTCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCATCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CTTCCGGAGTTCGGTGCCGGAGGCTCCTGACGATCAGTCGGCTCCTGCGCCCTCCGGCTGGTCGGACGGCCCATGGGCGTAGGTGTGCCCCCAGCGACTGGCACGTCCATCCTGAGATTGAGATATATCCCCCCGCTCATATGCCCTCTAGAAACGGGTGACCTACCAGAGAGAGGGCATCAGTTCCCTTATTAGCTCGTACGAGTGACGGTTTTTTGAGTAATGAACGGCTCCGAGTAGGGTCTTGTTGTTCGCTCGTTCCTTCGGCCTGAGTGTCGGCTCGATAGCTATCTGCCGAGATGCGGAGGAATCGTGTTGAAAAAAGAACAGCCTGACTGGGCGCTTGGTCTCCTGATCGTCTCTGTTCTGGAGGTCACACTCCAGTGGGCGATCTGGCTCAGCTCCTAGCCAGGCAGTCTCGTAACAGTGGCGGCGGGGTCGGTCATGCCAAAGCGGACCCCGTCGTCACGTACCGCACCGCTGAGCAACTCCCCCAGGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 102138-102765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 102138 28 82.1 21 ..T........G.TA.........T... CACCCTGCTCGGCGCATTGGC T [102151] Deletion [102187] 102188 28 100.0 33 ............................ GCCGAATGTCGAGCGGCTTAAGGAGGAGCGTCG 102249 28 100.0 33 ............................ TTCCTGTGATGCTCACGGATGAAGAAGCTGGAA 102310 28 92.9 33 ..T..........G.............. GTCCCGGTAGGTGATGGCGCCCTTGACCGAGTC 102371 28 100.0 33 ............................ GAAGGTCGGGGAGACGGTCGATCCGGCGTTGCT 102432 28 96.4 33 ....T....................... GGCCGACACGTCGACGTCGCCGTAGTCGATGGA G [102449] 102494 28 96.4 33 ...................A........ GCCGGTGCTCGACGTTGCGGATGCGCTCCTGGA 102555 28 92.9 33 A............G.............. GGCGTACCCGCACCCGGCCCGCGTCGACGCCGC 102616 28 96.4 33 .............G.............. GCACGACACTCCCCAGGATGCGGCCGGGGCCCG 102677 28 92.9 33 ......T.......T............. GAAGGTCGGGGAGATGGTCGATCCGGCGTTGCT 102738 28 85.7 0 ....T............A...GC..... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 94.2 32 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATATATCCCCCCGCTCATATGCCCTCTAGAAACGGGTGACCTACCAGAGAGAGGGCATCAGTTCCCTTATTAGCTCGTACGAGTGACGGTTTTTTGAGTAATGAACGGCTCCGAGTAGGGTCTTGTTGTTCGCTCGTTCCTTCGGCCTGAGTGTCGGCTCGATAGCTATCTGCCGAGATGCGGAGGAATCGTGTTGAAAAAAGAACAGCCTGACTGGGCGCTTGGTCTCCTGATCGTCTCTGTTCTGGAGGTCACACTCCAGTGGGCGATCTGGCTCAGCTCCTAGCCAGGCAGTCTCGTAACAGTGGCGGCGGGGTCGGTCATGCCAAAGCGGACCCCGTCGTCACGTACCGCACCGCTGAGCAACTCCCCCAGGGCGCGCCAGCAATTGTAGCTCGAATGTGCCGGCTCGCTTGCATGAGTGAATAGTGCGGCTTGCGATCAGTGAGCGCCGTCTGAATATTTTGCGACCGCTACTTGGGAAGCGGTCTGATGCCGCT # Right flank : CCCGCAACGGAGAGCAGTTGGAGATCACCCTCTAGTACTCCAGCAGCACTTCGTGATCATGGGCTATGGGGCATCGGGCAGGCCAGCTGTGGAGTCACTGGTTCATGCCGACAGGCGTGTGGTCAGGGCGTTGGCGAACCGGTGGTACTCGGCGACGACCGGCATGCTCGTGTTCTGCCCGTAGTGGGCGAGTCCGTGTGCGAGGTCTGAGCGGGCCTCGTTCGTGTCCCCGCGCAGGAAGTGAAGGGCTGGGAGGAGAATTCTGGTCCGATCGGGGTTGGGCACGTTTCCGCCTGCCCGAAGGGCGGTCAGTAGTGCGTCTGTGCTGGCGTGCTGCCGGGCGAACGGCAGGCCGTAGGCCTGAACGAGTTCGCATAGCTCGTCGGTAGCGCGTTCCGCGTCGCCCGGTTCGGCGACCCGTAGTTGCAGGAGGCTGTTGCCGGGGGTGAGGTGGCCGACCGGTCGGGCGATCGTGGCCGACGTCAGGGAAGCGGCCCCGG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 103913-104185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103913 29 100.0 32 ............................. TTCAGCTCCTCCACGCTGAGGATCTCGAAATC 103974 29 100.0 32 ............................. CGCGCCGCAAGTGAGGCCGGCTCGCTCAACAA 104035 29 93.1 32 .............C..............C CTTCAGGTGCTCTGCCATTTCCACCATGCTCA 104096 29 100.0 32 ............................. CCGTACCGGGCACCGGTCGGGTCGTAGTGACG 104157 29 82.8 0 ..........T..C......A...T...C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CTTGCGCCACCCCGCACTGGTCATCCGGTCCCGTGTGTCGGTGCTGAACGCAGTGATCAGGTCGCGCATCATCGGCCCAGGGTAGTGATCCCTTTTCCTCGTTCGCGGGTGGATAGAGGTTCCCGGGGAACTACGCGCCGCTGGCGAGTCGGTGCCGGTAGTGGCTGCGTCGGGCCCGGAACTGGTGTCGGCGCCGCCACGTCGACCAGTGCGTCAGGTGGTCCCATCCGTGGCACAAGGGGGTCAGCACAGCGGCCAGGAGATGGCGGATCTCCGGGACGGTCAGGTCGATGGGGTCGTGGGCCGCTCGCGTCGGGTCGGCGGGTCGCTCCGGGTGGCTGCAGCGGCAGGGCGGCAAGGAAGGCCAGCGCGAGCATCGTCAGGGTGATGTGGCGATGCCAGGAGGTCCAGTGGCGGACCTGGTAGTGGTCCAGGCCGACCTGCCCCTTTGCGGCCTGGAAGCACTCCTCGATGCACCACCTGATCCCCGCGACGCGCAC # Right flank : CCAGTAGTCGTTCTCGGTGAACTCCCAGTCGGTGTCGGCCCCGCATGTGGGCGTACGGACTTTTCTCCTCGGTGGCGTACGGACGAACGTCCCCAGTTCTGGCCGCGGGCAGCGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCAGGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 104797-105007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 104797 28 96.4 33 ............T............... GTACGGCGTCACCGAGCTGGGCGCGTGGCCGGT 104858 28 96.4 33 .............G.............. ATCTTCGGCCCAGCGCTTCTTGACGTCGCGGTC 104919 28 96.4 33 ..............G............. GAGGCGGACGCCGTCGACGCCCTCGATGTCGGC 104980 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCAGGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGACGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCC # Right flank : CTCAGCCGTGTCCGCTCGCGAGCCCTTCGCTGCTGTCGGCCCCGCACCCCCGTCGCCAACATGCGCGGCCACGCCGAACTCACGCTGCGCCGCCACGGCACGGCCCCTCCGGAGGTACGCCACGCCCTCGAACGCATCACCAGTGAGGCGCGGCGGATGTCCCGCCTCGTCGACGACCTGCTGCTGCTCGCCCGCCTGGACACCGGCCGACCGATGGAGCGGGAACCGGTCGACGTGACGCTGCTGATCCTGGACGCCACCGCCGATGCACGCGCGGCCGACCCCGCCCACCACTGGTTCCTCGACCTCCCCGAGGAGCCGGTCGCCATCGCGGCCGATGCCCACCGGCTCCAGCAGACCCTCGGGAACCTGCTGGCCAACGGACGCACCCACAAGCCACCGGGCACCGAGGTGACCGTCGCCCTGACGGCGGACCGCGCCGCGGTCCAGGTGAGCGTCAGCGACAACGGCCCCGGCATCCCCGAGGAGGTGCGGCCCGA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 106379-107742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026489.1 Streptomyces sp. 604F plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 106379 28 100.0 33 ............................ CGTCCTCCGCTCGAATCTGTTACAGCCGGGCCT 106440 28 100.0 33 ............................ TGTGTACAGTGTCGGTCATGACGACCCCCCGAG 106501 28 100.0 33 ............................ GATCAGCCGGCCCTGCGGGAGGCTGGCCACGTC 106562 28 100.0 33 ............................ CGGGCTCCGGGAGCGGTCTCCGAGTACCGCGGC 106623 28 100.0 33 ............................ CTCGGTGACCTCGCTACCGTCGGGGAATGTCAA 106684 28 100.0 33 ............................ CCTCGCGCGGCCTGACAGAGCGACTGCACGCCC 106745 28 100.0 33 ............................ CGCCGACGCCTACATTTACGAGCAGTACGGATA 106806 28 100.0 33 ............................ GCTCGACCGGCCCGCGCCGGCGGGCGATCTCTA 106867 28 100.0 33 ............................ CGCAGCAGGACGGCCACCGTCCGCGCAGACCTC 106928 28 96.4 33 .............G.............. GGTCTACCGGCACTACGCCCCGGCGACCTGGAC 106989 28 96.4 33 .............G.............. GTGCTCGCGACGCATGCCGCCCCAGGAGGACGG 107050 28 100.0 27 ............................ GGGCGGTGGCGATGGCGCGGCCCCGGA 107105 28 100.0 33 ............................ GTCATCAGGCTTCCCCTTCCGTGACGGTGGTGG 107166 27 89.3 34 ..............TA.........-.. GTACGGCTCTGGCACGGCGGCCGGCGCTCTGGCG 107227 28 96.4 33 .............G.............. GTGTGGTGGCGGTGCGTGGCCAGGCCACAGGCT 107288 28 100.0 33 ............................ GGTGCCGTCGCCCTCGACCCACACCGCGTACCG 107349 28 92.9 33 .............G............T. GATCGCTGAGACCGCCCACGGCCTGAACGTCAG 107410 28 100.0 32 ............................ GAGAACGGCGTCCTGGTCTGCGGCAAGTGCGG T [107435] 107471 28 100.0 33 ............................ CCGGTCGGCGGACTTGATCTCCACCCGCAGCCG 107532 28 89.3 33 .............G.A........T... CTCCGCCGGAGCCTGACGGCCGTGACGCAGCGC 107593 28 92.9 33 .............G..........T... GGAGACCAGCACGGTGCCGTCGGGGTCCTCGGT 107654 28 92.9 33 .............G..........T... GATGCCGGAGAGCCTGAACCACTGGCGCGTCAC 107715 28 85.7 0 ......T...TG.........G...... | ========== ====== ====== ====== ============================ ================================== ================== 23 28 97.1 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AAGGCGAGGGCGCGTCACCGTCCCCGGCCCCTTCGCCCCCGCCGGCCGTCCGGGTGTGCTCACCAACAGTGATGCGGTGCGACCCCGCGTCCCCGTCTGCCTCCGAGCGGACCACCGCGGCGCCGGCGCCGGACGCCGGCGGGTACTGGCCCGTGTGGTAGATGACGGTAAGGAACGGAAGCACCGCGTCCGTGCTGATCAGGTCGCCGTTGCCCCTGACCGGCAGGAGGTCGGGAGAGTGCAAGCCGCCTACCGGCAGCGCCTGGAGCAACGCCCCGTACCCCCAACAGAACCAACAGCCGCCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGACGATCCCATCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTGGCGGTAACCTCCCAGCTCAGCAAGT # Right flank : CGAGCCAGCCTGTGGTCATTCGATCGGGGCTCGCTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGGGTTTTGCCCTCGTAGGGGCGTGATCGCACGGTTCAGGGCCCGAGCGAGGCCCGAACGGGAGGGTCATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGGAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGGGCTGGAGGGTGAGGGTCGCGGTGTTCTCGTCGTACTTGACGGCGGTGACGCGGCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCAAGCCGCCGGCCGCGACCGGGGCCGTCCAGGCGCGGTCGGCGATGAGCTGCTGGATAGCCTCGCCGAAGGAGACCGGCTCCCGACCGCCGGTCCTGCGGGTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //