Array 1 138229-137924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHNZS010000006.1 Lactiplantibacillus plantarum strain QS7 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 138228 37 100.0 29 ..................................... GTCACTAGCGGAGTCAATGGATCGTATTA 138162 37 100.0 29 ..................................... CAGACCTGAACGTTTACAACCTATTTACG 138096 37 100.0 29 ..................................... TTGGAGGGCGCCTAAACTACTAACATGCC 138030 37 97.3 29 ....................................G ATGCTGAGGAAACGAAGCATAGAACGTTT 137964 37 83.8 0 ...........CG.C..C.........T..C...... | T,C,AA [137926,137929,137938] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 96.2 29 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACT # Left flank : GTAGTCATATCAAACAGGTTTAGAACAATTGCAGGAAGTAATCGATAAAGTCAAT # Right flank : AAAAAATGGCTCACCAACTAAAACAGGTTGGTGAGCCATTTCTATTTATTAACTAATTACTAATCAATCACGCCATCTTTTCCCATCCATCGGAACCGAATAGACTTCCCGACCTCGGTCACAATCAAGACGACGATCCCACAGATAATCGGGATGCCCCAACCATACCAGAAGTTGATGCTAGTCGTATGGAAGACGGATTGCATGAATGGTAGGTAAATGATTCCCAGTTGTAAGAGAATCAGGATACCAATGATGTAGAACGCCATCTTATTTTGGAAGAAGTACTTGGAAATGACGGGGTGGTCATTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATGGTACTACCGACGACGTTTGGTAACCCAAGCGCGGTCAAGTAGTCATAGGCGAAGATCCCCAATCCAGAAATTAGGAAGGAGACATAGCCGATTTCAAAGTAATCTAATTTTGACAACAACCCAGACTTAACATT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 33939-33243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHNZS010000032.1 Lactiplantibacillus plantarum strain QS7 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33938 36 100.0 30 .................................... GGGTGAATAGGCATGGGCAAAATAAACCTG 33872 36 100.0 30 .................................... CAGTGGAGTTTGTGCCTTAACTTCTTCAAG 33806 36 100.0 30 .................................... GTTTGGACTGGTTTATCAAGCAACAAGTTG 33740 36 100.0 30 .................................... CAGGTCAAACGATTGTACGGTGATGGGGTA 33674 36 100.0 30 .................................... GGCGAACCATACAGATTTTTTAGGAACTGC 33608 36 100.0 30 .................................... AAGCGCGGGATCACGTGCAACAGCACCATC 33542 36 100.0 30 .................................... CGGTGACTAGGCATGGGCAAAATAAACCTG 33476 36 97.2 30 ..................T................. CAGCGCGGGATCACGTGCAACAGCACCATC 33410 36 97.2 30 .A.................................. ACGTCGGCAAACTGTTCCAATCCTTGACAT 33344 36 100.0 30 .................................... AAGCGCGGGATCACGTGCAACAGCACCAAC 33278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC # Left flank : TTTGATATGACTACTATTCAAGACCAGGTCAAACGATTGTACGGTGATGGGGT # Right flank : CAGCATTTTAACATCATTTACTCATTAATTCATATCACGCCAGTCTACTAAATCCTCGTCAACATAATAATAACAACTATTTTTGAACTTTTCCATTCGATTTATTTCTGAGTATTCGATAACAATGACAGTTGCGCCCAAATCATGCACTAGTTGCTCAAAGCTCGCCCATTGTTTTTGATTTAAGTAATGGCTGACATTAGTCAACACCAGCTTCTGTTTCAAACCTAGTTCAACATGCGTTTGCACAAGTGCCTCCAGTATTGCCCTTGGGTCATTCATAAGCGCCGTTGGAAAGTGAATACCGGTAAACTTCAATATTTGTTCTAGGCTAGGCGATTCGTCAACATCTAGCGGTAAGTCTAGTAAGAAGCTGGCTTCCATTACTTGCGAAACTACTTTACGATTTTCATCTAAGACCGCTACTTGCCGATCATCAGCCATTAACTTGATAATTTGGGTCTGCACTTTCTTTAGAAAAAGGCGGTTCAAATCGACTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //