Array 1 561673-562835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQA010000001.1 Clostridium vitabionis strain YH-T4B42 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 561673 33 100.0 32 ................................. CTGCCGCGCTCACACTGCCGGCCAAGCCATGG 561738 33 100.0 36 ................................. CTTTCACGCCGTGCGCGTCCAAAAATACACGCCCTG 561807 33 100.0 33 ................................. ATGCTGTACGATGCCAGCAATATGCGGTGATGT 561873 33 100.0 32 ................................. TATCCGGGTCGTAGTATGGCGATGCATAATTT 561938 33 100.0 32 ................................. GATGGCCTTTTCTACTCGCGGAAGTTCATCCT 562003 33 100.0 36 ................................. CATCGTCCGGGATTTCAGCAGCCATTTCGAGTCCGC 562072 33 100.0 34 ................................. ATTATCCGGATACTGGTGGAGCGTGTCCGAGTAT 562139 33 100.0 34 ................................. TGTCACCTGGATCGACAGCGCCACGCTAAAGGCA 562206 33 100.0 33 ................................. CAACCTGCGGCCTTGCCTTGCCAGTCTCCACGT 562272 33 100.0 34 ................................. GTCATCGCCTTGTAGGTTTCCGGATCGTCGTTGT 562339 33 100.0 32 ................................. TATATCCTCCGGCTTAACCTTCCGGGATGCGT 562404 33 100.0 33 ................................. CTAAGGTGCAGGCAGGAGACGGTGACTGGACAA A [562436] 562471 33 100.0 34 ................................. TATGGGGATGCTGCTGAGACGGCACTGGGAAGCA 562538 33 100.0 34 ................................. TACGCCGCTCTCGCCGGGATCTGGGGTCTCCCGC 562605 33 100.0 32 ................................. TCGATTGTAATCACGGCGAACGTCGATGACCC 562670 33 100.0 34 ................................. TACCGTTTCGCGATAGCCGTCCATGATCTTTCTC 562737 33 100.0 33 ................................. ATCGGGGCGCGGGCTGGACATATAGACCGGCAT 562803 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 100.0 33 GTCGCGCCCCGCGAGGGGCGTGTGAGTAGAAAT # Left flank : AAGCAGTTTTTAAAATGAGCAGTATTTTATCCGAAAGAAGAAAAATGATATGATGGTGGTAATCAGCTATGATGTATCCACAGAAACAACAGATGGGAAAAGACGTTTAAGAAAAGTAGCGAAGGCGTGCGAAGCGCATGCCCAGAGAGTGCAAAATTCGGTGTTCGAGGCGAATCTGGATTATTCGACTTTTCTCAAATTAAAAGAGGAGCTCCTGAAGATCATGGATAAGGATTCTGACAGTATGCGCTTCTATTATTTGGGAAATCATTGGAAACGGAGGATTGAACATATTGGCGTGAAGAGCGGATATGACCCGGAGGGAACGATTATTATTTGATGGAGGTGATTTGTCGGCGAACCTATGGTGATTGGAAAAATCGGTTAAGTTCGCAATGATAAAGAAAGAATAATGGACCCAAAATGCAACTAATTTGATGTATTTTCCGCCTCTCACCACAAATTCTGGCGCGGCCGAAAGAAATTTACAACATATTGCG # Right flank : TTAATTGTTTCCCAAACTCCATCTTTCATGGCCTTATCGCCATAGATCACTTTCAGCAGCCATTTGTCATCTGGAAGGTTGTGTTCCTTGCGGTAGCTCTCGATCGGATTTACAACAGTGATATTATATTTATCAACGAACTGCTTTAATTCTTCGGTCAACATACTCCACCCTCCTGTAAACGCTTATGCCGTAAATTTTTCTTTCAATGTGTCCTGCAATACCTTCGAAAGGCTCAGCCCCTGCTTACTTACTTCTTCGTCCATCCATTTCGGGATGCTGACTGTCCTCCGCACTGCCCGGTTGTCCTTGATGTCTGCCCTCACGAAATTAACAAATTCATCCGGGTTAATGCTGATGCCAGACAGATCGCCCGGTTCAGGGATATCCTCGCCCTTGTCCAGCAAATAGCTGATCCATTCGGCAAGCGCCGATGCCGCCATGGTGATCGCATTGCCGAGGGATTTACCCTCGCTTATGCATCCGGGGAGGTCAGGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 563752-563918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKQA010000001.1 Clostridium vitabionis strain YH-T4B42 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 563752 33 100.0 35 ................................. AAAGATGGATCCCTGAATGTTTCTACTTCGGGTGC 563820 33 97.0 34 ...............A................. CGCCGTCATGACGGGACAACGACATTTTGGCGAT 563887 32 97.0 0 ..........-...................... | ========== ====== ====== ====== ================================= =================================== ================== 3 33 98.0 35 GTCGCGCCCCGCGAGGGGCGTGTGAGTAGAAAT # Left flank : CATTCGGCAAGCGCCGATGCCGCCATGGTGATCGCATTGCCGAGGGATTTACCCTCGCTTATGCATCCGGGGAGGTCAGGGAAAGTAATCGTGTAGGAACCGTCGTCGCGGTTCAGGTGGAAGACTGCGGGATAAATGTATTCGCTTTTCATAGGTGCCTCCTTCAATTTTATATATTAAGGGGGGATGGGGCTTATTTCAGCCCCGCATCCCGGAGAATTTGTCTTGCTGTATTCTCATTGATCTCCCGGTGCTTGGGAACCATTACCGGCCTGCTTCCTGGTTTTTCGTAAATCTCGTGATCCCCGTCCCGGACTTTTTTATATCCGGCTTGCTTTAGCTGCCTTACCAGGTCTCTGTATTTCATTCCCCCGCCCTCCTTACAAATATATTGTAGTACGCAAATTACGTAATGTAAAGAGAGAAATGCACAAATTACGTAATTATTATTTCCCGCGGTGCGCCTCCGTCTCGATCTGATCGGTTCTACAACTTCCCCC # Right flank : TCCGGAATTCAGGTTCACGGAAAGAGCCAGATCAGTCGCGCCCCGCTTTGGGATCCTTTGCCTTCGCGTTGGCGAGGCCAAGCTCTACTGTGCTGTCTAGCTTGAGCTGGATAATGTCCTGGGCAGCCTTCTTGTTAGCCGCATGGAGTTCCGCTATCTTGGTGGTCAGCGCCTCGTTGTCCCCGGCAGACTTCTTCAGCTCGGCCAGCTGCTTCTCGTAGTCGCCAACCGTGCCCTTATACGTGTCACGTTCCTTCGTGACCGCATCCATCTCTGCGCGGGAAGTATTGATGTCCTTCCCGTTCTCGTCCATGATCTTATCGATCACGTCATCTGCAAGCCCAAGGTTCTTCAGAAAATCTCGTTTCATGTGCCTCCATCCTTTCATTCACGCTTTTTTACGAGGTTGCGCCTCCCATGATTAGCTGGTTTCTGGCTTTTTACGTCCTCCAGCAGGACAGCACCCGGCGCAGGAATTGAACCTGCATCCCTGCCGTGAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCATGCCCCGCGAGGGGCATGGGAGTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //