Array 1 71192-70898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDHC01000022.1 Bacillus thuringiensis strain G25-94 G25-94_contig000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 71191 29 100.0 36 ............................. GTTGAAATGTATGAAGAAAGCACCCCTAAACTAAGG 71126 29 96.6 39 ........T.................... ATTCGTTGAATAATAAACTCACCAATAAGCACGGTGAGT 71058 29 93.1 36 .A......T.................... CTAGTAGTTAATTTGAACTGGGTATTTGACAGTGTG 70993 29 93.1 38 ..G...T...................... TGGGGGAATGCTCGGCACCTCACTAAATCATTGCGAAG 70926 29 72.4 0 ..T......C..G......A.T.A.G.G. | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 91.0 38 TTAAAACAAAACAATAGATGTATTGAAAT # Left flank : TCGTCGCACATTCATTGTTAATCATTCATATATTATCGGGGGTTAAAACATAACAATAGATGTATTGAAATTTTAAAGATTTTTGAACCTTTCCAGGAGTTAAACCCAGTTAAAACATAACAATAGATGTATTGAAATACTTATTAATAAGTCGGTAAGAGCCCTCTATTCAGGTTTTAACAAACTAATAGATGTATTTAAAAAGAAAACAAATCAATAAGAAACCCTGGGTGCTAGAGTGTGAATTATTAAATTTTTGGTGAATTTCCACGCCATAAATGGAGAAGTGATACACGGTAAATTTACCAAGTGTCAACGCTCCATAAGGTAGTATCGAATGTTAAATAAACATTGATACATAAGCATCCTGGATGCTGTGAAGGGTGTAACACAAAGACCGTTACATAATACATTAATTTGCTGGTGAAAAAGCAGGATATTGTTAAAATACAAGGGATCGTCGTACAATTCATTGTTCATCATCCATATATTATCGGGGG # Right flank : CTCATTGAACTTTGATTCGATTTGTATATAAATAGAGTAAATGTTATTATATAAGTAATCCAATACTGAAAAAATCATATTGCAAAAGGACACACCTACGCAGAACCATAGCGTAGGTGTGTCCTTTTTTTGTTTAAGGAGGAAAAAATTATGGGGAAAACGTTATTTATTGCAGAAAAACCAAAAGTGGCCAATGAAATTATGAAATCGCCACGATTCCGTCACTCACAAAAGTACATTGGTAGCAAACCTTATTACGGTTATTATGAAAATGATCATTATATTGTCAGTTGGTGCCGTGGACATCTGCTCGAACTAAAAAATCCGGAAGAGATGGATCCAAAGTATAAAGTGTTTCAGTTAGAACATTTACCTTTAATTTTTCAACCATCGTATAAAGTGATACAAGAAAATGCAGAGCAACTACAAATACTTGTTAAACTGTTACAGCGACCTGATGTTGACCATGCCGTGAATATTTGTGACGCGGACCGCGAGGG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAAACAAAACAATAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 90835-90559 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDHC01000022.1 Bacillus thuringiensis strain G25-94 G25-94_contig000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 90834 31 50.0 13 AAA.T........A..A.ATAC-TC.ATC... TTATTAAAGGAAA T [90829] 90789 32 81.2 34 ......T..CT.GC....T............. AACCAATCGAATATAAACGTGGGAAACCGAAAAT 90723 32 100.0 35 ................................ TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 90656 32 93.8 33 ..................AT............ TTAGACGAGATATATCCACAGAAGAAGAATTAC 90590 32 90.6 0 .......T..............AA........ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 83.1 29 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGTTGGAGTAAGAGGACCTGTTTCAATTCATACGGCAACGAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTCTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCGTCGGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCTTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACG # Right flank : GAAATTACTTGCTGCCTTATCTAAATTACTTTCTTCGCATTTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGTCTCTATTGGAGTAAGAGGACCTGTTTCAATTCATAAAGCAACGAGTGTTAATTCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTCAGCATGGGAGGGATAAAGTTTTAGATACGATGGAGAGGAAGCATCGTGTTGATTTCGGAGTCTATGTTTGTTGGTGGGATCATAATTCAAAACCTGGTCAATACTCCTTTGCAAAAGTACATCGTTTATTAGAGGCTAAACGAAATATTGAAGAACTAAAAAAAATCGATGATTATACTACTGTATTGGTACATGAATTAGAGGGTTTAAAAGTTGAGATTATTAATGGGATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAGGAGATACTCTATCAATTTATTAAAGGAAAGTCGCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.15, 5:-1.5, 6:0.25, 7:-0.49, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //