Array 1 163684-162020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBB01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N27359 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163683 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163622 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163561 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163500 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163433 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163372 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163311 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163250 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163189 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163128 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163067 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163006 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162945 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162884 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162823 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162762 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162701 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162640 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162579 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162476 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162415 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162354 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162293 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162232 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162171 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162110 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162049 29 96.6 0 A............................ | A [162022] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16333-15207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHBB01000025.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N27359 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16332 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16271 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16210 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16149 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16088 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16027 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 15966 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 15905 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 15844 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 15783 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15722 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15661 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15600 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15539 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15478 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15417 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15356 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15295 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15234 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //