Array 1 6364-4746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMX010000023.1 Clostridium perfringens strain CP-16 23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6363 36 86.1 29 A...ACA...A......................... CAGCTGAAGAAAAAGAAGCCATAAGGCTT A,A [6349,6355] 6296 36 100.0 30 .................................... TAGTTGAAGTTCTTATACCATCTACAACAT 6230 36 100.0 30 .................................... TAGTGAATACGAGGTATCATACCCAAGCTA 6164 36 100.0 30 .................................... TCTAAGTTGTTGAACCCGTTAAGTTCTCTG 6098 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 6032 36 100.0 30 .................................... CAACATAGTTGGTAAATCTAACTCAGTTAT 5966 36 100.0 30 .................................... TCAATGGGCTAAGGATGAATACGAAGAATA 5900 36 100.0 30 .................................... TCTCTATTCTTTTTTAAGTAAAGATTGCTT 5834 36 100.0 30 .................................... ACATCAAGTGGTGTATCCTCAAATCCACCT 5768 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 5702 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 5637 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 5571 36 100.0 30 .................................... TTACTCTTAGTCGCTGATCGTTCATTCACC 5505 36 100.0 31 .................................... AGTTTACACATAATACTTACAACTAATCCAG 5438 36 100.0 30 .................................... GACCTTTCTAAAGGTTTTATAACAGTTAAC 5372 36 100.0 30 .................................... TGATGACGATGTATATGCTTATCCAGATAC 5306 36 100.0 30 .................................... TGAAGGACAGACTTCTAAATAGTCCGCTAT 5240 36 100.0 30 .................................... GCAGTATGCTAAGTGGTTTCCTATCAGTTG 5174 36 100.0 29 .................................... CAACTCCGTTTTTCTCTTCAAAACTAAAT 5109 36 100.0 30 .................................... AGAAAAACATAAGCTTAAACAACCCCTAGA 5043 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 4978 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 4912 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 4847 36 100.0 30 .................................... ATTGATAAACCAATCGACAAGCCAATTGAT 4781 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.4 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //