Array 1 3927002-3926363 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGDR01000001.1 Escherichia coli strain NCTC9964, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3927001 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 3926940 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 3926879 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 3926818 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 3926757 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 3926696 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 3926635 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 3926574 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3926513 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 3926452 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 3926391 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3944179-3942503 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGDR01000001.1 Escherichia coli strain NCTC9964, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3944178 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 3944117 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 3944056 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3943995 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 3943934 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 3943873 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 3943812 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 3943751 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 3943690 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 3943629 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 3943568 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 3943507 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 3943446 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3943385 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 3943324 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 3943263 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 3943202 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3943141 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 3943080 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 3943019 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 3942958 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3942897 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3942836 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3942775 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 3942714 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3942653 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3942592 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 3942531 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //