Array 1 25150-26073 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGD01000203.1 Pseudomonas aeruginosa isolate 37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25150 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGACGTGTGT 25210 28 100.0 32 ............................ TCGGCCAACAGCCTCCACAAGGGAGGGAGGGG 25270 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 25330 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 25390 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 25450 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 25510 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 25566 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 25626 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 25686 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 25746 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 25806 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 25866 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 25926 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 25986 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 26046 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36718-34948 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGD01000203.1 Pseudomonas aeruginosa isolate 37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36717 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 36657 28 100.0 32 ............................ CGGAAAACTCGCCGGCCAGCGTGTTCTTCAGG 36597 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 36537 28 100.0 32 ............................ TTGATAGGCTCGTACTCAGGCCCGGAAAACTC 36477 28 100.0 32 ............................ AAGGCCCTGGCCTATATCGCGGGCGGCCTGAC 36417 28 100.0 32 ............................ AGTCGCTCCGCTGGGACCTGGAACAGGACATT 36357 28 100.0 32 ............................ TGTATCCAGAAGGGGGCCGAGGTGATGTTCAA 36297 28 100.0 32 ............................ TGGGCGACGTGGTCAAGCAGCGAAGAGGCAGA 36237 28 100.0 32 ............................ AAACCGGGGGCGCGGGGAGCTTGTCCGGCTCG 36177 28 100.0 32 ............................ ACGCTGAGCTGTAGAACCGGCTCGTTGCGACC 36117 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 36057 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 35997 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 35937 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 35877 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 35817 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 35757 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 35696 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 35636 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 35576 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 35516 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 35456 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 35396 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 35336 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 35276 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 35215 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 35155 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 35095 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 35035 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 34975 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 212903-214010 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGD01000085.1 Pseudomonas aeruginosa isolate 37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 212903 28 100.0 32 ............................ GTACCGCTCAGCGGCGAACCGATAGGCACCGG 212963 28 100.0 32 ............................ GACTTCTGGCTGTTTTCCATGCGCACCAGCGG 213023 28 100.0 32 ............................ TTCCAGGCCAGTTCCACCACCGGTACCACCGC 213083 28 100.0 32 ............................ CGTTCCAGGCGTGCCGCCACCACCATCGCCAC 213143 28 100.0 32 ............................ TCGATCAGCGCCGCAGGAAGCCCAGGACCACC 213203 28 100.0 32 ............................ AATTTCGAACAGCCGACTGATGCCATCATGGC 213263 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 213323 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 213383 28 100.0 32 ............................ AGGCCGGCGCCGATCTGCCCGCGACGAGGTAC 213443 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 213503 28 100.0 32 ............................ TGTTCCGCCAAGCGCTACCGGCACCGTGTCGC 213563 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 213623 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 213683 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 213743 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 213803 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 213863 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 213923 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 213983 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //