Array 1 29590-29333 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV786471.1 Corynebacterium sp. HMSC30G07 Scaffold435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 29589 36 100.0 39 .................................... TTCCCGCGCTGCCTCGTTTTCCCGCGCTGCTGCTGGTGC 29514 36 100.0 36 .................................... TTTGAGGGCATTATGGCGTTCTATGACGACAACCCC 29442 36 100.0 38 .................................... GCATTCCCAACTACTGCCGTCGCTGGCCGCATGGCTTG 29368 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 97.9 38 CCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCGAC # Left flank : NNNNNNNNNNNNNNCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCTATACGACCGCGCCGAGATCGAAGCCCTGAAGGATGAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCTCGGCAAGCGCGCCACTCCACACACCCTGATTGGACACTGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGTTTGCCGGAGTTCACGGCACAAGAAAACCTAGATTGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGAGGACGCGGGCAAGCTGGATAAACCGGACGCTGCCACGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGGACACATCCACACACCGGAGGAGGTGGAGCAGTGAGGTCGCCGTCCTTTACGGGACGGCCTTTCATTNNNNNNNNNNNNNNNNNNNNCAATGAAAGGCCGTCCCGTAAAGGACGGCGACTGCTGTCCATCGTCTCCGCCTCCGTGGTAGCCACGAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 29747-30419 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV786471.1 Corynebacterium sp. HMSC30G07 Scaffold435, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 29747 36 100.0 37 .................................... GTGGCAGCGTCCGGTTTATCCAGCTTGCCCGCGTCCT 29820 36 100.0 37 .................................... CAATCTAGGTTTTCTTGTGCCGTGAACTCCGGCAAAC 29893 36 100.0 41 .................................... CAGTGTCCAATCAGGGTGTGTGGAGTGGCGCGCTTGCCGAG 29970 36 100.0 38 .................................... TCATCCTTCAGGGCTTCGATCTCGGCGCGGTCGTATAG 30044 36 88.9 84 ................................NNNN NNNNNNNNNNNNNNNNATGAAAGGCCGTCCCGTAAAGGACGGCGACCCACCGTGGCTGCGGTGTTCCCGTCGAAATTCTGGGAA 30164 36 100.0 37 .................................... ACACCCATTGTCAAAAAACGCTGAAGGTCAATAGCAT 30237 36 100.0 39 .................................... ATGAGAAGTATGCGAACACGTCGTGCCCGTACCATTTGC 30312 36 100.0 36 .................................... CAGCCGAATGGCGCGCCGGGCGTTGCAACCGTGCGG 30384 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 9 36 98.8 44 CCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCGAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCAAGCCATGCGGCCAGCGACGGCAGTAGTTGGGAATGCGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGGGGTTGTCGTCATAGAACGCCATAATGCCCTCAAAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGCACCAGCAGCAGCGCGGGAAAACGAGGCAGCGCGGGAAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGATCGTGGCTACCACGGAGGCGGAGACGATGGACAGCAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGNNNNNNNNNNNNNNNNNNNNAATGAAAGGCCGTCCCGTAAAGGACGGCGACCTCACTGCTCCACCTCCTCCGGTGTGTGGATGTGTCC # Right flank : CTGGGGCTGAAAAACAGCACCAGTGAACAGGGTAAATCCAGCGCTTCGCGAGCGCGAAGACGATTCTACAAGACGTTGCACTTCAAAAATCATCCACTATTGAGTTCTCGATTTTGAGCAGGCGATTCACCGCGCGAGCGTAAGCCGGGGTTTGCGTGACACCGGCGCGCTCGTAGCTTAGCCGCCAATTCTGCTAGAGAATCAGTGCGTCATTGTCTGCCACCTCCCGCGACTTTCCAAGATACCCAAACTTTGTTTCGCTCAGTTCCGCTACTCGACCTAGGTCGCAGAAAAGAATGGAATCCTCGCCCGGCTCGATAATCGTGTTCAGGCGGGACTTTACTTGTAGAAGTCGGGCGGGTGAGATATCCACAACAAAGACGCTGTATTGCACCCGGTCTCCGAATTCTGACAGTGCATCAGCGACGCGTGTGCGTCGACGATCATTGATGATGTCGTAACAGATAAGCGTTCGACGTGTATCGTCCCGGCTCATCGAA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 40703-41486 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV786473.1 Corynebacterium sp. HMSC30G07 Scaffold466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 40703 36 97.2 36 ......................C............. CGTGACGCACGATGCGTGGCGTAATTCCCCTGTGGT 40775 36 94.4 38 ......................C.......T..... CGTCGACCCAATCAATCCAAGGGTGGTCGGACACATCG 40849 36 100.0 35 .................................... GAGGTTCGATAAAGGAGTACACGTCCCGGCCCGGC 40920 36 86.1 11 ...............................NNNNN NNNNNNNNNNN Deletion [40967] 40967 36 88.9 38 NNNN................................ GTCGCGGGGTCGATGCTGCGTGCGTACTTTTCGTCGAG 41041 36 100.0 39 .................................... CGAAACGCCAGGCTTGCCCTGGATATGAGCCAGGAAGAC 41116 36 100.0 36 .................................... CAAGGTGGTGTAGAGCGCCATGAGTGCCAACAACGC 41188 36 100.0 36 .................................... CAAACGGTGCGGGGGTTTACTCACGCCCATAAGGAG 41260 36 86.1 10 ...............................NNNNN NNNNNNNNNN Deletion [41306] 41306 36 86.1 34 NNNNN............................... CTTCAGCAATGGCTGCTTTGTGCTCGTACAGCCA 41376 36 100.0 39 .................................... CTGGCAATGAGACTATGCAGTACCGCGCGCCACCAATGC 41451 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 94.9 32 CCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCGAC # Left flank : CCCTCACCCCCTCCAAACTGGGCACGACGCTGTTGGATCAGCCGTTTACGTGGATCGCGCCCCCGTTCAACCGCTAGCGTGATCCAGCCCAATTTCAACAGCCCAATTTCAACAGCCCAATTTCAACAGCCCAATTTCAACACCCGCGCGGCGCTGCGGTAATCTAGCGCCACTGCCCCAGTAGCTCAGTGGATAGAGCACTTCTCTCCTAAAGAAGGTGTCGGAGGTTCGATTCCTCTCTGGGGCGCTTCTCTGGGGCGCTTTTGGGGGTTTCGAAGAATCTAGTTTGATTGTTCGAACAACCCCCTCAAAACATCAAAAACGCCTCTACCTGCACAAATAGGAGAGGCGTTTTTGTTGTGCCGAGACCGTTTCCGGGCTGTCGTTACCAAAAAATGGCCGAAAATCGCTACCCGTTGATCGCTTCTATGGGGTGTCGGGCCGTCCCGTAAAGGACGGCGACCACACCGCCTGGCCGCTGGCTGGGACTTCGATCGCGC # Right flank : CGGTACTGACGACGCAGACAACCTCGTACCGGCCTGTCCCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGGCCGTCCCGTAAAGGACGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 584-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV786475.1 Corynebacterium sp. HMSC30G07 Scaffold480, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 583 32 100.0 42 ................................ TCCAATGAGGGCGGCAATTACGGACCGGACTACGGCAGGTCG 509 32 100.0 43 ................................ TCAGGATAACGCGCCGCAATGACGCGGCACCATTCCGCAGTCG 434 32 96.9 38 ...........................A.... ATCGATTTCGTACACGGTGCGGTTGTCGCCCTCTGTCG 364 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =========================================== ================== 4 32 99.2 41 CCGTCCTTTACGGGACGGCCTTTCATTGAGGG # Left flank : | # Right flank : GGCCAGCTGGCCTAAGCACGCGGACGGCAACCACGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGNNNNNNNNNNNNNNNNNNNNCGTCCTTTACGGGACGGCCTTTCATTGAGGGGGGCGAGCTTTCGCACGACCGCGTAAGGCCTAACGATGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCCCTCGGCGTTGACCCCGAACGGGAAGCGGTACAAGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCCCCGTCACCTTGCGAAACCGTGTGCGCCTGCTCCAGGGTCGCCGTCCTTTACGGGACGGCCTTTCATTG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCCTTTACGGGACGGCCTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //