Array 1 33573-34664 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQDZ01000004.1 Neisseria meningitidis strain M39139 M39139_S13_cleaned_ctg_6501, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     33573	    36	  97.2	    30	........G...........................	GTTTCTTCCCATATACTGCTGTTCAAACCG	
     33639	    36	 100.0	    30	....................................	CTCAACATTGTTGTAATCTGACCGCAACGC	
     33705	    36	 100.0	    30	....................................	TTTTCATCGTAACATAGTTGCTTGCGCCAA	
     33771	    36	 100.0	    30	....................................	ACAATGTTTCGGCGCAACACATCAGCAGGG	
     33837	    36	 100.0	    30	....................................	AAATTTAAAAACTTCAAAATTAAATACAAG	
     33903	    36	 100.0	    30	....................................	AAGGGGGGTCAGGGGGGTCGGAAAAAATAC	
     33969	    36	 100.0	    30	....................................	ATCAAAAACGCTCAATATAAAAAATCAAAA	
     34035	    36	 100.0	    30	....................................	AATTTACCAAAACAAACCAATACCATGCAC	
     34101	    36	 100.0	    30	....................................	GTGTGTTCGGCAACTCTGACCGCATGACGA	
     34167	    36	 100.0	    30	....................................	GACGTCAAATCGCGTTACGCCATGGCGCAG	
     34233	    36	 100.0	    30	....................................	AATCGCCTCGAGCCATACGGAATCAAGCTC	
     34299	    36	 100.0	    30	....................................	ATACGAACTCATCCGGAGCCACGCCGAGCC	
     34365	    36	 100.0	    30	....................................	AAAAATAACAGACTCATCAGAAAAATAAAT	
     34431	    36	 100.0	    30	....................................	CCAGCCTACAAACCCTACAATCGCAATCAA	
     34497	    36	 100.0	    30	....................................	AACCGTCTGCACCGTAAATGTAATCAACTT	
     34563	    36	 100.0	    30	....................................	TATCTTTCTCGCCAAACCAACCGTTGTAGG	
     34629	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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