Array 1 9605-9933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUN010000029.1 Erwinia amylovora strain IVIA2303 Ea_IVIA2303_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9605 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 9665 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 9725 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 9785 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 9845 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 9906 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 185203-187365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUN010000006.1 Erwinia amylovora strain IVIA2303 Ea_IVIA2303_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185203 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 185264 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 185325 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 185386 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 185447 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 185508 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 185569 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 185630 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 185691 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 185752 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 185813 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 185874 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 185935 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 185996 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 186057 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 186118 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 186179 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 186240 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 186301 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 186362 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 186423 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 186484 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 186545 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 186606 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 186667 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 186728 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 186789 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 186850 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 186911 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 186972 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 187033 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 187094 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 187155 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 187216 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 187277 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 187338 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //