Array 1 36271-35901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCJ010000042.1 [Clostridium] symbiosum strain GGCC_0272 NODE_42_length_36345_cov_346.589005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 36270 33 100.0 36 ................................. CTTGATTTGTAGGGTCTAATTTGATATTATCTTTAT 36201 33 100.0 33 ................................. AACAACAAAAACATCATATCCATTTTCTGAAAG 36135 33 100.0 35 ................................. CGACGGTACGGTGCTTACAACTTATAGCCTGCGTC 36067 33 100.0 34 ................................. TTTCGCCCCATTCTCGTGATAAAAATCTGACCAT 36000 33 97.0 34 ...........T..................... TATAAATTCATCTGGTACGTCGATCCGCAAATCT 35933 33 90.9 0 ........A............A......T.... | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 98.0 35 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : GATTTTGATTATATCTTATTAGCCACTCCCGTTACAACTTTACTTTATCACAACAAGCAAACAAGCCCGGCAAC # Right flank : TTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAGGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACCCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7968-4019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCJ010000104.1 [Clostridium] symbiosum strain GGCC_0272 NODE_104_length_18396_cov_279.933700, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 7967 32 100.0 35 ................................ GGACTACCCCGATTGCAGTTACTAAGCAGGATATC 7900 32 100.0 34 ................................ TGTGGAAATTTCATCCGCCAAAAGGATGCAGGCC 7834 32 100.0 35 ................................ CATAGGTGTCATAGTCCCGGCCCCGGAAGGTCTTC 7767 32 100.0 34 ................................ AGGTAGTTACAGTGACATGATATTAAGATTCAGA 7701 32 100.0 34 ................................ ACTGAAATTGACATGTGGAGATACCTATAATGAT 7635 32 100.0 35 ................................ TAGGTGATAAGCTGTTTTCACAGTTACCCTTAGCA 7568 32 100.0 33 ................................ ATTTGCGAAATACAGAGTGTCTTTATACGTATT 7503 32 100.0 33 ................................ AATATGATAACGCTTTAAGTATCGCTTCTTTAC 7438 32 100.0 35 ................................ CAAACAACAGACTTAGGCGCAAAGTTGGTGGTCAC 7371 32 100.0 33 ................................ GTTCGCCTGTAACTTTACCTAAATCTACTACCA 7306 32 100.0 34 ................................ TTGATATTTCTGGTTAAATGGCGATCTGAAAATT 7240 32 100.0 39 ................................ TTTTTGCATCCTTTCTTTGAAATACCGGAACAGGTGGAA 7169 32 100.0 35 ................................ TATCCCAGCATGATGCATAGCATGTCAGGCAACCG 7102 32 100.0 35 ................................ GTATCTATATGTAGCTTCAGACCTAGCATTGTTTG 7035 32 100.0 35 ................................ TGCTACGCTTGGGTCAAACTGGAATGGTTTCGCCA 6968 32 100.0 34 ................................ GAAAGCCGCGCTGTCGTGGCACTGATAGAAGTAG 6902 32 100.0 35 ................................ CTCCTTCATCCACTTCACCGACGCCCACTTCTTCC 6835 32 100.0 36 ................................ TGTACTTCGCAAATGAAACAGCGCAGTCCAGCTACT 6767 32 100.0 36 ................................ CACCATTCGAAGGTGGGTTAGGCGGTGGTACATAAT 6699 32 100.0 34 ................................ ATCTGGTGGTCGGTACAAATAAAAGGGCAAGCGA 6633 32 100.0 35 ................................ GAAAGCTGCGCTGTCGTGGCACTGATAGAAGTAGT 6566 32 100.0 33 ................................ TAATTCAAGGGGAGATACTAATACTTTGCATAA 6501 32 100.0 33 ................................ TTCCCTAAATATTGAATAGGGAAGAGTTTTACC 6436 32 100.0 36 ................................ ATTTAAATGGATGGCAGAATTAGGAAAAGATTTATT 6368 32 100.0 35 ................................ CTTTCAGTTGATTTTCATTTACCAGGACGATCCGC 6301 32 100.0 33 ................................ CGCCGTGATATCACGTAACAGCTTATCAACGTG 6236 32 100.0 34 ................................ CACGCTGTTGGCGTTACTACCCCCGTGTTACCGG 6170 32 100.0 33 ................................ TCCACAAGTTTTAGGGAGGTTAGAATGGTTAGA 6105 32 100.0 36 ................................ TGCCGCAATATTGGCAACAGCGGCCACTCCTGTGAT 6037 32 100.0 34 ................................ ATTTACTCCTTTATCCGGGCAAAGGAAATATTTT 5971 32 100.0 34 ................................ CTGACCAGAAGTCTTACCGTCATAAATAGTAATT 5905 32 100.0 34 ................................ GTAGGATAAGCCATTTGCAGAAGAAATCATTCGC 5839 32 100.0 34 ................................ CGTATAAACCACTGCTTCCCCCATTTCCAGTTTA 5773 32 100.0 35 ................................ AATTAATTTATCTTAATACCAGTACACTGTTCAAA 5706 32 100.0 34 ................................ CGTCAAAATCACGCGGAACAAAATTAATCGTAAT 5640 32 100.0 34 ................................ TGATATGCCGAAGGGAGCAGGAAGGAAAAGCTTT 5574 32 100.0 35 ................................ CACCTTGCCTTTGGCGATTGCATCGATAAGAGAAG 5507 32 100.0 33 ................................ TTCTGCTTATAAAAAGCGGTTGAGGGGCTTTTA 5442 32 100.0 34 ................................ TAAGTTTCGCGGTTGGCGAGAAATTAACGGTTTT 5376 32 100.0 35 ................................ ATCTGTTCGACCGATTAAAATGTAAGTTTTGTAAT 5309 32 100.0 36 ................................ ACCTTCTAGGCCTAGAAAATATGCACAAACACTAGG 5241 32 100.0 33 ................................ TTTTTACTGTGCTATAATTTCCATATTGAATAC 5176 32 100.0 34 ................................ CATGAAGGTTTTCTTCCTGCTGCGGATGGGCAGC 5110 32 100.0 34 ................................ CTCGATTGCTTTGCACGCACGTTCTTTCTGTCCT 5044 32 100.0 34 ................................ CTGAGCTGTAAAGGAGATCGACCAGTGCAAGTTC 4978 32 100.0 35 ................................ CTTTAATTTATTTCATGATTGTAAGTCCGATAATT 4911 32 100.0 33 ................................ GTTCCTATCCCCGTTAAAAGTTAGTTCATAGTA 4846 32 100.0 36 ................................ TCCTGCTGCCCTGAAGTAATAACAGGGTTTGCACAC 4778 32 100.0 33 ................................ CGGTTTTTCGCGTTGCGAAAATCTCTCCGCTGC 4713 32 100.0 34 ................................ GGTCGTATTGAAGAACAGGATTGATTTCTGCGGC 4647 32 100.0 34 ................................ AGTTCCCTTATTGTAATCAACAAATCCTTCTGCA 4581 32 100.0 34 ................................ ATTTTCATAACCTAAAGTTCGACGGTAATTTCTC 4515 32 100.0 36 ................................ TTTTGTTATATGGCAAGGATAAAGGTAGAAATCAAA 4447 32 100.0 34 ................................ AGGTACAGAAATGTGTAAATGAACTTCTTCCTAT 4381 32 100.0 34 ................................ TGTTTAATGGTGTAACCAAAATACCATGTCTGCA 4315 32 100.0 34 ................................ CCGCTGCATCCAGAAAAATGCCTTCCAGGATATC 4249 32 100.0 35 ................................ CTGAGATAATAATAATAGTTGGTTTGGGTATCACA 4182 32 100.0 33 ................................ ACTGCTACAGAAATAGTGTTCTCGCTACTATAG 4117 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 4050 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ======================================= ================== 60 32 99.8 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTATTGGCGCAAAGAGGTGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGGATGTCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCAGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAGCAAAAACAATCATTCATAGCAATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 908-71 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCJ010000007.1 [Clostridium] symbiosum strain GGCC_0272 NODE_7_length_84905_cov_326.840978, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 907 33 100.0 34 ................................. GCTGTAGCTGTCCGGTTCCGGCCAGATATCCCAG 840 33 100.0 34 ................................. AATGTTTGTCGTGTACCCACAACCTGCATTACAC 773 33 100.0 33 ................................. ATTATCATTTTCGCTTTCATCATATTCCATCCG 707 33 100.0 35 ................................. GCCAGAGGTTCCAATTAGCTTTGTTCCGTTTCGAT 639 33 100.0 34 ................................. CATCTTTTTCATATACATTTTCAAACTGGCCGTT 572 33 100.0 34 ................................. TGATATTCCCATTTGTAAAGTTATTGACGTACAA 505 33 100.0 34 ................................. TCCTTGTTCTGATACCACAAATACAATCGGAGAT 438 33 100.0 33 ................................. AGTTGGAGAAACCGTTAGAGACGGCCGATGATA 372 33 100.0 34 ................................. CGTTTAGTCAAACGGTCAATGTGGCGGGAGCTAC 305 33 100.0 34 ................................. ATTTTCCGCTTTAAGCAGACATCGGTAATGATTC 238 33 100.0 34 ................................. ATATTTCCTCCTTATTCAAATTTGACTGAGTGTA 171 33 100.0 35 ................................. CTGGTTTTGGCCGGAACTATTCTTGCCGAGTGCCC 103 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 13 33 100.0 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTGACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TCGTGACAGGTACAGCTGTAGTGGTCAAGCATTTTTGTAACGCTTATGGCTAAAAAAATCAGCTTTTATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //