Array 1 15838-14711 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDH01000173.1 Escherichia coli strain KCJK7254 NODE_117_length_15968_cov_3.03497_ID_233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15837 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 15776 29 100.0 32 ............................. GGTGGCGAGCTGACGGAGTTGGTCTACCGGTC 15715 29 100.0 32 ............................. CTCGGTTGTTTTCATATTACCGGCCTGCCACT 15654 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 15593 29 100.0 32 ............................. CTTTTCATCAATCGGAGCATATTTGCGATCGA 15532 29 100.0 32 ............................. CGGACGGTGGGAATATAGAAAATCCGTCCACC 15471 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 15410 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 15349 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 15288 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 15227 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 15166 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 15105 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 15044 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 14983 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 14922 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 14861 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 14800 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 14739 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCTTAG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42587-42981 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDH01000196.1 Escherichia coli strain KCJK7254 NODE_18_length_43251_cov_3.46369_ID_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42587 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 42648 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 42709 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 42770 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA 42831 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 42892 29 93.1 32 .........G..C................ ATCGATATGTACGTTAGCGAGGGGATCACGCA 42953 29 86.2 0 .........G.AC...............A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.1 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //