Array 1 2457-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXJE010000057.1 Pediococcus ethanolidurans strain NC579 assembly_contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================================== ================== 2456 36 100.0 30 .................................... AACAAACTAAGACTGATGTTGATAATATTA 2390 36 100.0 30 .................................... GTTTGCAACTTGATTGAACAAGCCGTGTGT 2324 36 100.0 30 .................................... AAAGGCTTACGGTTACAGCGTTCAAAACTA 2258 36 100.0 30 .................................... GAATGAACAATACCAATAGGCATACAGTCA 2192 36 100.0 30 .................................... ATTGAAAGGGAGTTATATACAGTATGAGAA 2126 36 100.0 30 .................................... TGGTACAGTTTAACGCCCTGCAGCTAACGC 2060 36 100.0 30 .................................... TATTCACGTGTACTACCATTGTTGCCACGA 1994 36 100.0 30 .................................... CTTTTAAATCACCGGCTTCGTCATAAACAC 1928 36 100.0 30 .................................... TACTACCTCTAACAGTTGACGTTTTCGACT 1862 36 100.0 30 .................................... AAAAGTTCAATGAAAAACATTCGTAAGTCA 1796 36 100.0 30 .................................... TTGATTTTGCTGATATGTCCCCACGGACGG 1730 36 100.0 30 .................................... AGATTAATAATGAATAGTAACTACTATGTT 1664 36 100.0 30 .................................... TTAAGACTGGCACAACCACTAAAACAGTGA 1598 36 100.0 30 .................................... TCTCATGTTGTCCTAAAGTCGGTGCAGACA 1532 36 100.0 30 .................................... AGCGTCCAGCCAGTTGCATTAAAGCACTGG 1466 36 100.0 30 .................................... AAGCAATAAAACAAGTGAAGCTTATCTTAA 1400 36 97.2 30 ................A................... TTATCAATAGTTACCCTAGAACTTGTCTCG 1334 36 100.0 30 .................................... CTGATTGACTTGTTGCCACCTCCTTACACA 1268 36 100.0 30 .................................... CAAACGAAGTCGCTACTGTAGGCAATACAG 1202 36 100.0 30 .................................... AGTGATGAATTATTAGAAGCCTTAAAACAA 1136 36 100.0 30 .................................... TAATAATTTGGGTCTGTTTGGCCCCAGCTT 1070 36 100.0 30 .................................... TTAATATCAAGCTAGTCACTAATAACGGGT 1004 36 100.0 30 .................................... TAGGTGTTTCACCGTATGAATTTAGTCAAT 938 36 100.0 30 .................................... AACTGCAACATTGCTAATGGCTTCCAGCGA 872 36 100.0 30 .................................... CCAGTTATCTTTCCGGCTGCCAACTGCTTG 806 36 100.0 30 .................................... GATGCGTTAATATTAGTACCCTCAATTTTA 740 36 100.0 30 .................................... CAGCAAAAAGAGAAATAACCCCAATAATCC 674 36 100.0 30 .................................... TATCAGTCTTTTTTCCGTGCCGTTTACCAT 608 36 100.0 30 .................................... TTTTTAACGAACTCGTTAAGTGCATATTCT 542 36 100.0 30 .................................... ATGAACCAAAAGAAGAAGATGAAACGGTTG 476 36 100.0 30 .................................... ATAGCCAGTTAGTCAGTGCTTTTAATTTGT 410 36 86.1 123 ........................T..T.....TGT TATACTTGAATTGACGTTAAATAATTACTTCACAGGTGATACAATGTTGTTTTAATAAAAGCATTTTTTAGTTTTGATTTTGTGGGATAATTTGAAGATACTTGTAAGCCTTAAATATGTGGA T,AC,C,CT [371,377,382,384] 245 35 80.6 0 ............C...A.....G.G.G.....-..T | ========== ====== ====== ====== ==================================== =========================================================================================================================== ================== 33 36 98.9 33 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGATC # Left flank : AAACAGATTTAAATCGAATGTTTCAAGGACAATTACAAAAACAAATTGTAGAAAATCTAGATGATGAAACAAGGCAAAAACTAACGGAACTCAATAATCAATTGAAGTCACTAGTTTTTGATGCTACTTTTACTTTAGATTTACCATTAAAAGTAAGCAGTGAATTTGACCCACTTAGATTAGTTAAATACTGTGATGTTGGGTTTGTAAGTGCTTTAAAACAAAATCCTTATGATATAATTGAAACAGTGTTAAAAGCTGCTTCAGAATTAAAAGAATCAAAAATATTGGTCTTAACTAATGTACGTAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTACTACGCTTAATTTGAACATCTTGTTTATTGAATTCTCAGAAACAGACAATCACGAGAATTTTAATAAATGCCGTTATTAATACGTTGATCAAGATTTTGTTGATTGGCGTTACTGATTACTATGAGAGTAGGGTTATAAAAAAACG # Right flank : TAAGATTCAATGTCTAATTAAGCTGTTCATTATGATTAAAGGCAATAGTTCATTTTTAATTAAAAAAATGAACTATTGCTTTTTTATCATTTTAATATAAAATTATATGTGGAACAAAAAAAGAGATGAAGTTTTTGTTGAAAAAGGCCAAAAGATTTCTAATATTTTCGATGATATTTATGATAATTTTTTTAATTCCCATACGACGACA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //