Array 1 347922-350601 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQQY01000003.1 Listeria monocytogenes strain ICDC-LM3002 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347922 36 100.0 30 .................................... CCATGATTGATGACAAAACGGTATTTTCCT 347988 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 348054 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 348120 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 348186 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 348252 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 348318 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348384 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348450 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348517 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348583 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348649 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348715 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348781 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348847 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348913 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348979 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 349045 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 349111 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 349177 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 349243 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 349309 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 349375 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349441 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349507 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349573 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349639 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349705 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349771 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349837 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349903 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349969 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 350035 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 350101 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 350167 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 350233 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 350299 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 350365 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350431 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350497 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350563 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350588,350594,350597] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //