Array 1 200329-200813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJV010000002.1 Listeria seeligeri strain FSL W9-0592 NODE_2_length_426159_cov_71.894668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 200329 29 100.0 36 ............................. TTAGAGGAGAGTTACATAACTGGTAAAGAAATTGGA 200394 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 200459 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 200524 29 100.0 36 ............................. TTTTTTCTTATCTTCCGTCCATTTTTTGCCCGTCAA 200589 29 100.0 36 ............................. CCGGGATTGTTTCTAGAAATAACCGCATTAGAAGTT 200654 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 200719 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 200785 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGTGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAATGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGCAGAAAACAAGAGGGATTGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAATAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 207052-208507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJV010000002.1 Listeria seeligeri strain FSL W9-0592 NODE_2_length_426159_cov_71.894668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 207052 29 100.0 36 ............................. GCGAACCTCACATTCTCAAATGTTTCATTTGTTGTT 207117 29 100.0 36 ............................. ACGGTAATAATCACTATCATTCTTCTTGTATTTCTC 207182 29 100.0 38 ............................. AATTAATTCGTCCCCGCGATCATCAACGTGACCGCTTG 207249 29 100.0 38 ............................. AAGAACGTCCCTGCATCATCTTCACTTTGAAGAGTGTA 207316 29 100.0 36 ............................. TGACCATTTACAAGCGCATCCATTTTGGGTGATACT 207381 29 100.0 34 ............................. TTATTGGATAAATTTGTAAAGGATTTAATTCTCC 207444 29 100.0 36 ............................. AAATGGTGCTTTTGAGGCAAAATATCGACGTAAACC 207509 29 100.0 35 ............................. ATAAAGGAAGTTCAAGTACTTCAAAAAGTAGTGGA 207573 29 100.0 35 ............................. TTTTTTCATTAAGTATCTCACAATAAACAAATGTA 207637 29 100.0 37 ............................. AACGATTTTATGAGCAGATCGAGAATTTTTTTCTCTG 207703 29 100.0 38 ............................. TTTGTTCGATTTCATTAATTTTGTAGCTAGTTACCTCT 207770 29 100.0 35 ............................. TTTGACTTATTTGAACTTCCGTTACTACTGCTATT 207834 29 100.0 37 ............................. TGCGTAAGTATTTCCTTCTGTATAGCCACCAAGCTCC 207900 29 100.0 35 ............................. GAAATAAACGAGAGTAATCTACCGTTCTAAGCAAT 207964 29 100.0 37 ............................. TCCTACAAGTCGCACGCCATTTAAGTAAACCTGCAGG 208030 29 100.0 34 ............................. CTAATCTGAGAATACTAAAACGAGCTTGTTCCGC 208093 29 100.0 35 ............................. ATTACATTTTTTTCCGCAGCCGCATCTGCTACTGC 208157 29 100.0 36 ............................. TCGTTTGAATACAAACATAGGTCTACAGCAACACCA 208222 29 96.6 36 .........G................... CAAGTATAGCGATTTTACTTGATGACCCGGCTTGCT 208287 29 100.0 36 ............................. AATGTAATGACTTTGAGGATTTCATAAGGAAAGAGG 208352 29 100.0 34 ............................. AAGGTATTTATAGTCCCCCTCCACCGCCGTCCCA 208415 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 208478 29 86.2 0 ........C....C..A...........G | T [208504] ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTCACCGTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 217106-218883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJV010000002.1 Listeria seeligeri strain FSL W9-0592 NODE_2_length_426159_cov_71.894668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 217106 29 100.0 35 ............................. GTAGAATATGCCTCTGTGTATGCAGCAAAAGATAC 217170 29 100.0 37 ............................. ATTATAGGTCGGTTGGTGGATTGATTTAAGGTTAATG 217236 29 100.0 35 ............................. TGTGTTACAATTCAACTCCTTTTATATTTCAGTTG 217300 29 100.0 38 ............................. CATGTATTTTAACGTGCTTGGACTCATTAAATACGTAA 217367 29 100.0 36 ............................. TTTAGCATGTCTTTTAGTTTTTCTCTCTGTGTCTTC 217432 29 100.0 36 ............................. AAGTTTGGTGGCGTAATTTTATAAGTTGTTGTTAGT 217497 29 100.0 34 ............................. AGAAGTTAGAGGCTGTTTGAGCTAGTTGCTCCAT 217560 29 100.0 37 ............................. AAATCTATTTGGCGATTCTGTTTGGAATTTACGTCTA 217626 29 100.0 34 ............................. ACAGCCGCAAAGTCCTTAACGCTTGCATAGTCAA 217689 29 100.0 34 ............................. TACACAAGAGTAGTAATTACTGTAGATGGAGTGA 217752 29 100.0 37 ............................. ACACTTATAAAATTCTACGTAATCGACAATATCACTC 217818 29 100.0 37 ............................. GTATCAGCCGGAATGGCAAGGCTCTGTGGGGTATATT 217884 29 100.0 37 ............................. AAAGGAGATAATACCCTGTACGTACTAGGTCAGCAAC 217950 29 100.0 35 ............................. GTGGAAGATTTGGAGGGTGAATAAATGACTTTGAG 218014 29 100.0 39 ............................. TTGGCATTACTATCTGTTTTGATAATCAATGTTCTTCAC 218082 29 100.0 37 ............................. AGAAGTATGGAAAATTAGACCAGAAAACTTGGCAAGA 218148 29 100.0 35 ............................. CTTAAAACAGGTTCGTTCGAGATTGACTTCTCTTC 218212 29 100.0 36 ............................. AAGTGATAAAAGAAGATGACCACACATGTGATGCAT 218277 29 96.6 35 .......................A..... TTATTATCCCAACAACTAAAGAAAACTTGAACTAT 218341 29 100.0 35 ............................. GAGATTAGCAATTTATTTAAGAGTATCACGTTTCC 218405 29 100.0 35 ............................. ATTTCTAAGACTGCTACTCTTTTTCTGTCTATAGA 218469 29 100.0 34 ............................. CCGTAACGGGGACGTTTGTAGACGTTGACGACTT 218532 29 100.0 34 ............................. TCCAATCAATCGAAAACTGTAGACTGTCGATAAT 218595 29 100.0 35 ............................. TGGGTACGGAAAAAGAAGAAAAGTTCGGGTAAGAA 218659 29 100.0 36 ............................. AACACCGGAGTTTGAGCGGTTGAATCATCTGTTAAC 218724 29 100.0 36 ............................. TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 218789 29 79.3 37 A.A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 218855 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================= ================== 28 29 98.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTTGACCTCCAATAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGATTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //