Array 1 1-1541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYX01000010.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N41746 N41746_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 28 96.6 32 -............................ CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 61 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 128 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 189 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 250 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 311 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 372 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 433 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 494 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 555 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 616 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 677 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 738 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 799 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 860 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 921 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 982 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1043 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1085] 1085 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1146 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1207 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1268 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1329 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1390 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1451 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1512 29 96.6 0 A............................ | A [1538] ========== ====== ====== ====== ============================= ====================================== ================== 26 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17276-16272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYX01000035.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N41746 N41746_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17275 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 17214 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 17153 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 17092 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17031 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16970 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16909 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16848 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16787 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16726 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16665 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16604 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 16543 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16482 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16421 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16360 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16299 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //