Array 1 198948-198648 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794113.1 Streptococcus sp. HMSC078H03 Scaffold272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 198947 36 100.0 30 .................................... ATCAAATAAAGAAACTGATTGCTTTAAACA 198881 36 100.0 30 .................................... ACGTCTGGGGTAAAGTAACGTATGATGAGC 198815 36 100.0 30 .................................... TCTACAACTTGATAAAATAAAACGTTGATT 198749 36 100.0 30 .................................... GCTACCACTTTGAAAACTGCACATTCAAGT 198683 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GTAACTGTACAACTAATGACTTCTTTATCCGCTTCCTTACGTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGAATTTATCTGTTTCAAGTCACCCGTTTTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGAATTTGGTGAAATAAGCGAAGTGTACGCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTCTGTTCTGTCAAAGTTGGTGCATACACCCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGAGAGTCTAGGAGTCTCTAAGCATTAAGGGTTTTTGTACTCTCAAGATTTAAGTAACTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACTCTCAAGATTTAAGTAACTGTACAACAACCTGTAGGAAAAAGTTGTTATATGTTGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACTGTACAACAGAATTTGGTGAAATAAGCGAAGTATATGCGTTTTTGTACTCTCAAGATTTAAGTAATTGTACAACGTCTGTGACGATTCCAAGAATTACCAAGAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAGATACTGATACTGCTCAGACTCGTCAAGAGTTTTTGTACTCTCGGTATTTAAGTAACTGTACAGGTTGATTGAATCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCAGTTCAACTGAACTTGGCTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 199471-199172 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV794113.1 Streptococcus sp. HMSC078H03 Scaffold272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 199470 36 100.0 30 .................................... TAATGACTTCTTTATCCGCTTCCTTACGTG 199404 36 100.0 30 .................................... GAATTTATCTGTTTCAAGTCACCCGTTTTA 199338 36 100.0 29 .................................... GAATTTGGTGAAATAAGCGAAGTGTACGC 199273 36 100.0 30 .................................... TCTGTTCTGTCAAAGTTGGTGCATACACCC 199207 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTGTCTCAGAGGAATCATATGATAGTTTTTATAAGCAAATTGGTCGGCTAGTCAAAAAGTATTCAAACCTAACCTTTATTTTATTTCCAAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTCCCAACAAGAGAAAGTTTTAGGAAATCCTTAGAGAATGTGACGCCTTATTTATTGAAAAAAATGAGGAGACAACCGAATCTCTCACTCGTAGATTCAGCAATTTTAAATATCCTAAATCACTTGTTTCACTTTAACTATTGTATTAAATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TGAGAGTCTAGGAGTCTCTAAGCATTAAGGGTTTTTGTACTCTCAAGATTTAAGTAACTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTACTCTCAAGATTTAAGTAACTGTACAACAACCTGTAGGAAAAAGTTGTTATATGTTGGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACATCAAATAAAGAAACTGATTGCTTTAAACAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACACGTCTGGGGTAAAGTAACGTATGATGAGCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTCTACAACTTGATAAAATAAAACGTTGATTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGCTACCACTTTGAAAACTGCACATTCAAGTGTTTTTGTACTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //