Array 1 510315-512995 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRP01000002.1 Listeria monocytogenes strain ICDC-LM1866 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510315 36 100.0 30 .................................... ATAACATTTGACCTTTCATAGTGTGCGCCT 510381 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510447 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510513 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510579 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510645 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510711 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510777 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 510843 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 510909 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 510975 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511041 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511107 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511174 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511240 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511306 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511372 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511438 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511504 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511570 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511636 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511702 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 511768 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 511834 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 511900 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 511966 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512032 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512098 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512164 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512230 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512296 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512362 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512428 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512494 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512560 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512626 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512692 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512759 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 512825 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 512891 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 512957 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512982,512988,512991] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49628-50956 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRP01000001.1 Listeria monocytogenes strain ICDC-LM1866 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49628 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49694 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49759 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49823 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49889 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49901] 49957 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50022 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50087 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50153 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50217 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50282 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50347 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50412 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50475 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50538 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50604 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50667 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50732 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50798 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50863 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50927 29 93.1 0 .......................A....C | C [50950] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //