Array 1 671890-672337 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJJPP010000002.1 Alcaligenes sp. MMA 2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    671890	    28	 100.0	    32	............................	ATCCTGCTGATTCTGGGGGCTTGGAAATTTGG	
    671950	    28	 100.0	    32	............................	TTCGTATGTCCCCCATTGCAAAGAAAGTAATT	
    672010	    28	 100.0	    32	............................	AAGAGCCAAACGTGAAACCTACATGAAGGATT	
    672070	    28	 100.0	    32	............................	ACATCGTAGTAGTAGAACGTCCGGCCTGAGCG	
    672130	    28	 100.0	    32	............................	ATTAGTAATAGGCACGGACTTGTCTCACGCTA	
    672190	    28	 100.0	    32	............................	GAAAACACCAATGTCTACGTCTGACCGTTACA	
    672250	    28	  92.9	    31	....................T.C.....	AGTATGGGCTGTGCTTTTTGCTAGGCGTTAA 	G [672276]
    672310	    28	  67.9	     0	..G..GC..GTC...A....T.G.....	|                               	
==========	======	======	======	============================	================================	==================
         8	    28	  95.1	    32	GTTTGCTGCCGAGTAGGCAGCTTAGAAA	                                	       

# Left flank :   ACACTTAAATCGGGATGCCGCAGGGCGGCTTGGACATCGCCGTGCCTGTGGACCAGCCACGCCCCACCACAGAAATCCGCATCCCACACCAAAGGTGGCCCCTGGCGAAGGCGGGCATAAGCCGGATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACTGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGGAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCAGGGTGTTTTGAGCTAATTAATGAGTTATTTGCCGTTTATGACTACTGTTAGCTGTTTTTGTGTGACTGTTTTTTACAATAAAATTGATGAGCGAATTCGAGGTGATGGTCTTTTCTTTGCAGAAACCCTTTTTTCCTATGATTTAAAATTTTGTTTAAAATCAGATGCTTATGGGGTGGTGTGAAAAAAGGGTTTTAGTCGCAAAAAAAGCCATAAGATAGAGCCTGATTGGCGTTCAGGGATGAATGCTCTA
# Right flank :  AAGCTTCTGGGTTTGTATCGTGCGCAGATAAGGTTTGCTGCGATAGAGGCCGCTGAAAAGGTTTAAATTTCGGATGCCCAGCTAGCTTTTTGTCGTAGGCCATCGCCTATCTAGTGGCAAGGCCAGTGCTGGTAGCGGCCCTGCAGCAATGGCAGGCTAGGACTACCGCCCTAGTCTGCTATTTATTCCAACTAATCACCGGGCATCAGATGCTGCTGGCAGTCCATCATTACTTAGTTTTTCGGTTTTACGCTGCGGCAACTTCCCGTTCAAAATAAAGTACGCCAACAGACCAATCACCAGTCCCCAGAAGGCCCCGCCAATCCCGAATAGCGTGATATTGGCAGCCGAGGCCAGGAATGTAATCAAGGCTGCTTCACGCGATTTGACGTCTGCCATGGCGCCGGCCAGGCTGCCACCAATGGTTCCCAGTAGCGCCAAGCCCGCCAGGGTGGTGATGAAGGTTGCGGGGAAGGCCATGAACACGGCGGCCAGCGTCA

# Questionable array : NO	 Score: 6.01
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGCTGCCGAGTAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.72%AT]
# 	Reference repeat match prediction:         F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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