Array 1 659175-656397 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHX01000001.1 Neisseria bergeri strain M40463 M40463_CHA5855A11_cleaned_ctg_4947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 659174 32 100.0 32 ................................ CTGACCAAAGCAATACGCCCAAAAATTACACG 659110 32 96.9 33 C............................... TACGACTTCGAAGAAGCCGTGAACGCCGGCTTA 659045 32 100.0 33 ................................ TAAATCACCTTTGACGGCTTGATAGGCTTCATA 658980 32 100.0 33 ................................ TGCCTGCGTTTCGCCGCCTTGTTTTGGCTTAAT 658915 32 96.9 34 C............................... TGAATAATTATCATCAAGCGCAAGTTATAGCCTG 658849 32 96.9 34 C............................... GTACAAAACACCCTGAAAAATATGAAGGCTATAA 658783 32 96.9 37 A............................... GAAACATCAGTGGCATGCCGAACTCAACGGTTCGTTC 658714 32 100.0 34 ................................ GAAACGAAATACACGCTAAACGTTTTTGTCAGGG 658648 32 96.9 33 A............................... TACAACGGCGAGGGCGTGTACGTCTTCACCGCC 658583 32 100.0 33 ................................ TGCCAAAACCAAATCGAAGCGTGGGAACGCGTC 658518 32 96.9 33 C............................... AGTACCTTTAGGGATTTGTTTTATTTCGCTCCC 658453 32 96.9 33 C............................... AGCAAAAACCCAAGCATTTATGCCTCGCTTTTA 658388 32 96.9 34 C............................... ATCGGCAAGCTCCTTGAACGTATCCAGCTCTTCG 658322 32 100.0 34 ................................ CGAATAGTTAAAGAAATGGTGTTTTCTTCACAAG 658256 32 96.9 33 C............................... AGCTCTAAGGCATGTGAAGATTTTTTGTACGAG 658191 32 100.0 34 ................................ TTAACCAACCTCTTAAAAAAACCGTTTCGCCCCA 658125 32 100.0 33 ................................ ATGGCTGGTGTAATGACTAGATATTCATGCAAG 658060 32 100.0 33 ................................ ACCAGTTGCTACACCTCAAGCAAAAAAGGTATC 657995 32 96.9 32 C............................... GCGCGATATATCCTGTATCTGTTTTTTTGCCA 657931 32 100.0 33 ................................ TTTGATATACTGGTTTCATTGTGAATCTAACTT 657866 32 96.9 33 T............................... GTCTATGATGACGACCGAACCGTTATTTTCGGG 657801 32 96.9 33 A............................... TTCGTAATATGTGCCTGTTGCTTCTGAACAGCA 657736 32 100.0 32 ................................ TATACAGCCTGCTATATATTCAAAAGTTCTTA 657672 32 96.9 33 C............................... CCGTCTTTGCCGTCCCTGCCGTTTGTGCGCCCC 657607 32 100.0 32 ................................ CAAAGGATGCTGAATGTGATCACGTCGTTCCG 657543 32 96.9 34 T............................... TCAAGCAGTTGCGCTTGGTGGATGTGCCGGGCGA 657477 32 100.0 34 ................................ CGTCCTTATTACCCAGCCCCAATAATAGCTTGTA 657411 32 100.0 33 ................................ AGCATGAAGTCTTTGGGATTCGGGTCAGTTAAT 657346 32 96.9 34 A............................... TAAACCGAAGTGAAAGGAAAAACATCATGTCTCA 657280 32 96.9 33 A............................... TTTTAAATTTCATATCATCCTCCTACTTGAAAA 657215 32 96.9 34 A............................... TCGTTCTCGTTCGGCATATGGTCATCATACCGCG 657149 32 96.9 32 T............................... CGGTGTGAACGGCTGCCATTGTTCGGGCTTCA 657085 32 96.9 34 T............................... CAACGATTGACCAGGCTATGGACTATTCTGTGTC 657019 32 96.9 34 C............................... CAACGATTGACCAGGCTATGGACTATTCTGTGTC 656953 32 96.9 34 C............................... ATTCAAAATGTTATCTTTGGATGACAGACACCGG 656887 32 96.9 33 A............................... AAATGGGCTTTATATGCGATTTCTTGAAAAAGA 656822 32 96.9 33 T............................... TGCTGCTGGGCGTTGTCGTTCCTCATGCTCAAG 656757 32 96.9 33 T............................... CCCGTTCCGACCTCGTGCCGAACAGCCCACAAG 656692 32 96.9 33 C............................... AGCCCATTACGTCAATAATTATTTTAAAATTAT 656627 32 96.9 36 T............................... CCTGTTGGGAATAGCATGTGCAATCTGTCTTCCCAC 656559 32 96.9 33 T............................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 656494 32 96.9 34 T............................... AGTTACGGTTAAATACGCTTGCCATTTTCTACCA 656428 32 87.5 0 T.........TC......T............. | ========== ====== ====== ====== ================================ ===================================== ================== 43 32 97.7 33 GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : GCATGGAGGGATAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCTCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACTTGGGCAGCAAATGGCGGCGCAAAGTGGAACATCACGGCGCAAAACCGACGGTCGATATATTCAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGCTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCAAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGC # Right flank : GGCGCGGACGACATCCGCTTCCTGCGCGAGCTGGGTTTGTAAACCCTTAAAGGACAATCCGATTTCCCTACGGCTTCAAACTCTGTCGGGGTCGAAGCAAAAATGCCGTCTGAACTTGGTTTCAGACGGCATTTTTTAATAAAAAAAGGCTGTGTTTTAGTAATCTGTTGATTTCAATTCTTTGCAAGGGAAAAGACAATTATTTTCCGGTTAGGAATAAATATTCTGTTGAATACCTTAAAGCCAAGTACGCCTATCAACACTATATTAAAACACAGCCTAAAAAATAATTTATATTATATCCATATATAAGTATAATGACACTTATTATCAACTCATAAGTGAAGTAGAGATGCGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGCTGGCATCCTGCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //