Array 1 35889-40822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOT010000001.1 Microcoleus sp. FACHB-68 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 35889 37 100.0 36 ..................................... GTGTGAGTCACCTGCTTTTCCCGCCAGCCGGCAGGA 35962 37 100.0 35 ..................................... GCTTACCGAGCACAATCTAAATCAAACCCTGCCAA 36034 37 100.0 38 ..................................... TTGCCGCTGCCGGTGGGACCATATACCAGAATGCGATT 36109 37 100.0 36 ..................................... AATGGGGCCTGCGAAGTGTCTGCCCTTCATCAGCAC 36182 37 100.0 34 ..................................... GACTTGGATTTGCTCATCATCACGAGTAATTATC 36253 37 100.0 35 ..................................... TCGACAGTGTAATCAAGGCGCTCTACCAATGGATG 36325 37 100.0 36 ..................................... AGGCAGGGGCCAAACAGTAGCATCCCAGCAATGCGA 36398 37 100.0 35 ..................................... CGAGCATATCGATGGTGCCGGCCTTAACCTTGGCA 36470 37 100.0 35 ..................................... AAACTGCCTCAGCAAACCTTAACTAGCAAAAATAG 36542 37 100.0 43 ..................................... AGGATGAGCGAACTTGGCAGTAGTGCGGGCGCGGCTGTCCCCT 36622 37 100.0 37 ..................................... TGCAGCATGAGTGATTTGTTCCATCAAAATGCAGAAA 36696 37 100.0 34 ..................................... GTGCCATCCAATAGCGATGCTAAGCATTCAGCAG 36767 37 100.0 39 ..................................... CCATCCCACTGCCCAACGGCTTGGTACTGCGGGAACTGC 36843 37 100.0 41 ..................................... CCTCACTCTTTATTGGTTCGTCGGTCTGAGCTTCCCTCTGA 36921 37 100.0 36 ..................................... TTCATGGCTATTTTTGCTAGTTAAAGGGTTTGCTGA 36994 37 100.0 34 ..................................... CCGAATCGGACAACTTTGTCTTTTCAGGGACAAC 37065 37 100.0 38 ..................................... GATTGCTAACTCAATGGGCGGCCCGTATAGCCGCTCAT 37140 37 100.0 36 ..................................... TTCTGGAAACTGGGGATTGCTATAGAAGTTTAGAGA 37213 37 100.0 37 ..................................... TTTAAGAGAGTTGTAAAATGGGCGTTTTTCTTTCCTT 37287 37 100.0 34 ..................................... TTAGGCTGTAAGTTGTTAGTACAAGCGGTAAATG 37358 37 100.0 46 ..................................... AGGCAGCGACGCCAGCCTTAGACTCTAGCTCTGCGGTGCGCCCCGG 37441 37 100.0 35 ..................................... GTTAAATTCAGTAAGTTTTATGGCAGCTTTGGCCA 37513 37 100.0 36 ..................................... AAGACTTCTTGGGGCATCATTAAAAGGATGCTTTGG 37586 37 100.0 34 ..................................... GAATCCGTGTTTTCAACTAATGCATTCTTGTAGT 37657 37 100.0 40 ..................................... TAGAATTTTCGCTTGCACTTCTTTGCTTCTGGCGGTATCG 37734 37 100.0 41 ..................................... GCCCCCAGAAGAGGATGAAAAAAAAAATATCAGCGACCCCA 37812 37 100.0 37 ..................................... AAGATTGTTGCCAACGTTCCGCCGTCAGTGCTAGTAA 37886 37 100.0 37 ..................................... AACTTGACGATTTAATGCTTTATCGATTGCACTGCAT 37960 37 100.0 37 ..................................... CAGCAAGCCAGGGTGAGACATCCCAATATGATTCAAA 38034 37 100.0 42 ..................................... CCAAGAAAACAATATCTAGTCCTAAATCAAGACAGCCTTCAA 38113 37 100.0 39 ..................................... ACGCTCCGGAATACCCAGAGCATGATTACTTTTCAGAAG 38189 37 100.0 36 ..................................... CCTTTCGATCCACCTGTAAGCGCAAGCGTGTTGCTG 38262 37 100.0 34 ..................................... ATTCTGTGCGGAGCTTCCTACGCTAAAATCAGGG 38333 37 100.0 35 ..................................... CTGATTCGGCTGAATCAATACAGGCAAGCCTAATT 38405 37 100.0 45 ..................................... GTAGGGTTGGAATTGTCGGAAAGTCTCAGGTAGAGAATTCCTGTC 38487 37 100.0 40 ..................................... GCTTCAGGAAAAATTTAGCAGTGGTGACTGGCAATCTGTA 38564 37 100.0 37 ..................................... CCCAAAGGCATTTCTACAATTCTTAGCTGCATAACTT 38638 37 100.0 35 ..................................... ACTCCACCTAGTTTGCTGATTGCATTACAGAGATT 38710 37 100.0 39 ..................................... TACCGGGTGTTATCAAGTGAAGGAACGCACCGCTACCAA 38786 37 97.3 34 .........T........................... TCAAACTCGTGCAGCCCCAACTGAGCCAGCACAT 38857 37 100.0 34 ..................................... TTCCCAGCAGGGATCTTGGGCCATCTTGCTTCAG 38928 37 100.0 43 ..................................... AAAATTTCAGCATTGTAGTTACCGCAGTGTAGCATGACCCTAA 39008 37 100.0 36 ..................................... AAGGGTGGCGCTGCCGGCTTTGTGCTAGGTTAAACT 39081 37 100.0 34 ..................................... GCCCTATTTATTGCCCAATTCTGCCGACCAACTG 39152 37 100.0 35 ..................................... CTCAATTGCACTGATTGGGGTTATAGTACCGATTA 39224 37 100.0 35 ..................................... TTTTTTCTTACCAAACCTCAGAAAGACCAGCCTAA 39296 37 100.0 35 ..................................... ATGATAATTACGCTTCCTGTTGTGGGGAGTAGAAG 39368 37 100.0 34 ..................................... CGAGCGCGGCTATCTCCCTGACATGGTGGGGAAG 39439 37 100.0 36 ..................................... GCGGCTGAGTGGGTTGATGCTTTTCGATATCCTGCC 39512 37 100.0 36 ..................................... TGCGGCTGAGCTTTAGAGATGGAAGATTTCGGGCTA 39585 37 97.3 42 ..................A.................. AACACCCATCATGAATAGTGGCTTCCCTAATGGAGGCGTCCG 39664 37 100.0 35 ..................................... AGACTTTACTTAACTTTGAATCCTCCATTCTTTAA 39736 37 100.0 36 ..................................... GAGAAATAGATGTAGTTGGCAATGCGATAGGCTGTA 39809 37 100.0 35 ..................................... TCTAAGCTATCAGTTTAATTTGTGCAAGTCTATCT 39881 37 100.0 40 ..................................... TTATTACATGGAGAGAAAACAACACGCCACCGAGCGCTGA 39958 37 100.0 35 ..................................... TAATTAATTCCCAACACTTTTAACTGATCTGCAAT 40030 37 100.0 44 ..................................... AAAATAAAATTGAATTCGATATTTGTATTTGGATGAATTCAAAA 40111 37 100.0 39 ..................................... GAATCAGTGGCATATCAATCAAGTTTTAAGGGTGATTGG 40187 37 100.0 38 ..................................... CCGTGTGTGATTTGTGCGAACAATCCACGCCGGCCAGG 40262 37 100.0 36 ..................................... TTTGTATTCTATATTTTCATAGGCAAGAGGAGTTCT 40335 37 100.0 45 ..................................... GCGCTTTTCTGTTGGTTGCTGTAAATTTAAATACATGGAGCTTGA 40417 37 100.0 38 ..................................... CAATAATAACAAAGCGTGGAAAGGTGCGGAAATTGTAC 40492 37 100.0 35 ..................................... CAATAATAACAAAGCGTGGAAAGGTGCGGAAATTG 40564 37 100.0 36 ..................................... ATATCACGCTCATCTGACTTGCTAACCTCGATTAGA 40637 37 100.0 42 ..................................... TATCATACAGAACGTTGTGAGGGATCATACAATGATTATTTA 40716 37 100.0 33 ..................................... GAATCCATAATGCAGCGACACAAGCATCTGCAT 40786 37 81.1 0 ............................T.AG.CTGA | ========== ====== ====== ====== ===================================== ============================================== ================== 67 37 99.6 37 CTTGAAATTCCCTTGAATCCCTATCAGGGATTGAAAC # Left flank : GATCGCCAGTGTACTTATCGAGAGGCATTTGAAATTCAATCTCGCTTGCTGGCGAAGTACCTGATGGGAGAGATTGAGAAATATCCGCCACTGCTGTTGAAGTAGGGGGTGAGGGGCTGTGTTTGTTGTGGTGTCCTATGATGTTTCTGAGGATAAGCGGCGCACCAAAATCCACAAGGTGCTGAAGTCTTACGGGCAATGGGTTCAGTATTCAATTTTTGAGTGTGACTTGACGGAAACACAGTATGCTAGGCTGCGTTCGCGTCTGGCTAAGTTGATTAAAGCGCCGGAAGATAATATTCGATTTTATTTTCTATGCGCTTGCTGTGCCGGCAAGGTAGAAAGAATTGGGGGCGAGCCGGTGAGGGATACAACAGTGTTTTTTGCTTGAGGTTATTGCGCGGATGGGTTGGTGTTTAGCAGAGATGGGGTGGAAAATCCGAGCTGAGTTCCTATGTTGTAAGAGTTAAAATTTTGTACTCTCTTAAAGGAAACAGCTA # Right flank : ATCAAATTACCGATGGGAGAACCACTAATTTTTGATAGTAAACCGGCACCAGATCAATCACCGGCTTCTATGCCAACACCACCGGCAGGACAGATATCCCACCAGTCAACCGGCATACACAGTCAATTCCCTTACAAATTAACACGTCTGCCCTTAATAAAATAAGTCTGCATATCTCCCTTACCCTTAACAGAAATAACCCCCCGATCTTCAAATAGATACTTATCTTGGATGTGATGATAAGTTGTCTCAGTGATCTGAATGCAGCCGGCAGCGCCGTGAGATTCCATGCGGCTAGCCGTATTCACCGTATCTCCCCACAAATCATAGATGAACTTTTTCGTGCCAATCACCCCAGCTACAACCGTGCCGGTGTTAATCCCAATTCGCAGGGAAAAATCTGTGCCTCGCTTAATATTGAAATCTTCAATACTCGATTGCATATCCAGCGCCATTTCTGCAATCGCTTCTGCATGATCACGCTTCGGTAGCGGAACGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTCCCTTGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 835151-837055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOT010000006.1 Microcoleus sp. FACHB-68 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 835151 37 100.0 37 ..................................... CTCAATTAAGATCAATAATGAGGCAACGATTTCTAAC 835225 37 100.0 35 ..................................... TTTGAAGCCGACATCACCCAAGATTGCCCCAACTT 835297 37 100.0 35 ..................................... ATTGAAGGTTGAAATCGCCAAGCGCCCTACCTCAA 835369 37 97.3 37 A.................................... AAACTTACAGCGCACTAGCAATCGCATCACATTTAGG 835443 37 100.0 35 ..................................... GGCGTCGTGGCGGTGGGTTGGGATTGAGGGTTACA 835515 37 100.0 37 ..................................... TTTGCAGAGAGAATGGAATGTGCGAGTAGCATTGGGT 835589 37 100.0 37 ..................................... ACGAACGCCGGCGCAGGGAAAGCCGAGAAATTTGGAA 835663 37 100.0 36 ..................................... ATGGATATTTGGTTCAACGCATTTGTGCCGGCAAAA 835736 37 100.0 35 ..................................... AGTAAAGAAGAAGTTGACAAAAACATGGAAGAGTC 835808 37 100.0 38 ..................................... GGTGTGATCGCCTGATTCTATCAATCAAAAATGGAATG 835883 37 100.0 40 ..................................... AGCCAATTATTTGGAATTATGTTTATGGAGCTTTTCCCCC 835960 37 97.3 43 ...............................A..... ATCCCGGCTTGGCTTTCGTGTTCTCGATATTTGGTGGCGACTT 836040 37 97.3 35 ....T................................ AACAAACAAATGACAACTCAAAAAGCAGAAATTCA 836112 37 97.3 35 ........................C............ GAGAATCGTTCAGTGGTGGGTGTTGGTACACAGTT 836184 37 97.3 37 ..........................T.......... CTAAGTTTTTCACCCTCGAAAACGTCATAGGATATGC 836258 37 94.6 45 ............................T...A.... TATTCGCATCTGGTGGATAGCTCAAGTTTATGAACAGGTTGACAA 836340 37 100.0 47 ..................................... ATTGAAAACCCGAAACACTGGCTTTTTGTGCAAGTGGCGCGGTACAC 836424 37 100.0 35 ..................................... AATACAGCAATCTACGCTTTTATCTACCTCTGCGG 836496 37 94.6 33 T...................................A GGTTATGCCGAAGGCTACCGCGATGGTGAGCAA 836566 37 100.0 43 ..................................... AAGCCAACACCTGTAAGGATTGCGTTTATTTCCGCTCTCACAA 836646 37 100.0 34 ..................................... TTACAAGCTCATCAAATTAATTAGAGGTTGACAA 836717 37 100.0 35 ..................................... CAAATCGAGAATTGCAATCTTGAAAAGGCAAATTT 836789 37 100.0 37 ..................................... CGAAGCATCAGAGAAGAATCCCAAAAAGCCGAATGCA 836863 37 100.0 39 ..................................... CCTAAAAGCCTTACTCAGAGAGGAATTGATAGGATCTAA 836939 37 100.0 43 ..................................... AAGCGTTCTCCGCCAACTTCACAAGCACAGAAATCGCCAAGCA 837019 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 26 37 99.1 38 GTTTCCATTCAAATAATCTTCCCAGCGAGTGGGAAAC # Left flank : TTGGATTTGATAGTGGTTATTTTTGGCGGTGTTGGTGAGATTCCAAGCGAGGGAATGGGGGTGATTTAATCTGACTTGATGGGTGGTGTCTTGCTTTTCTTCATCCACCCAAGTTTTATTGGCATCACCGATTAAAAATTGCCAGTCTACGGTTGCCGGTTTGTCGGCGGAGGGATAGAAGATTTCTCCCAGAATTCCATTGATGCCGGTGAACCAAACTTTTGAGGTGGGGTTGGCGGCGGTTCCCAGGAAGGTGAGGGTGGAAGCCGGCCAATTTGGGCAAGTTCCGGGATAACCAAAGGCTTCTTTGGGGGAGAAGGGGTGGGTGAAGGCGAGGCTGCCGGTGATCAGGCAGAGGGTGAGGAAGAGGGTGATTTGGATGCCGGTGAATGGATGATTTTTTTTGAAAGGCATTGGGGAGTTTCGGGAGGTTTCGATGGGCTAGATTGCCCTGATTTTCTTCTTTGCTAACTTTTTGGGAGGAGGTTTTGTGATTTCTC # Right flank : CTCCAGAGTTGGAGGAAGATGATGAGGATGATTCTCAAGTTTAATCAAAAAAAATCACCCTTGTAAACCCAATTCTCCCCCATCTTCCCTTATTTCCTCACCACACTCCCAAAAAATTAAGGGCGGAGACAATCTTCAAGCTGAGCGCAGATTGTTTGATTGAGATCATCAAAAGGATTCGTTGCCGGCAGCTTTGTAATTCCCCGCACAATTTTGCGTAAATTCGCTAAAAGCTCCGGTTGATTCTCAATTTCAGAAACCCCCTCAAGCTGATGCACCGAATCATTCCGCTGCTTGCAATAACCACCCAAATATTTGATAGATTCAACTAAACTTGCCAACTCCGGAAAATATTCCAGAACCGCAATCATCGTCAGCCGGTGAATATACTGTTCCTCTAACCGCAGTGACCAACCATTTTCCTCGACGCAGTAGTTTTTTAAATACTGGTAAAGCTTCCCCTCATCAAAGGTGTTAATTTCTTTCTTAATTTTTTCCTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAAATAATCTTCCCAGCGAGTGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 887517-893045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOT010000008.1 Microcoleus sp. FACHB-68 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 887517 36 100.0 34 .................................... AGTCATGGTCTGAGCATACTTAAAACCACTCACA 887587 36 100.0 35 .................................... AAACCTCACTAACGGCTAATTATACGCCAGCCAAC 887658 36 100.0 34 .................................... AAAGCCTTCGCGCATTGCCGCTTCACCCTCAATA 887728 36 100.0 37 .................................... TTGGGATGAGGATAAGAAAGCTGGCAAGCTAGGTAAA 887801 36 100.0 36 .................................... AGACCTGCAACGATTCCTCCACTTAATCGGCGTGGC 887873 36 100.0 39 .................................... GCAATGCCGATAACAATTGCCGCACTTAAAGCCAGTGGA 887948 36 100.0 37 .................................... GGGCAAACCCTTCAAAGCCTGCAAAAATCCCAGCTAC 888021 36 100.0 37 .................................... ACAAGGGTGAGGAGGAAACTATCGGCTTCTGCTAGCA 888094 36 100.0 36 .................................... CAAGTTCCGCCGGCTCTATACCTTGGGCCTTGGCAG 888166 36 100.0 40 .................................... ATCTAACCAAACGAATCGGGGAGCCGAAATGATCAATAAA 888242 36 100.0 37 .................................... CGATAAATTCCTATCAGAACTACCGGCAGAACAATAT 888315 36 100.0 36 .................................... CACTGCACCACATTTACCAAAGAGCGCGACTGGCTG 888387 36 100.0 35 .................................... AGGGAACCAAGCAGGATAACTGAAAGCAACCAAAC 888458 36 100.0 35 .................................... CCATAATTGGGCTGAGGATAGATGGCTTCTTTCTC 888529 36 100.0 37 .................................... CGCTTGGATACGGGGGGGGAAGTTGTCTTTATGCGGA 888602 36 100.0 37 .................................... TTTGCGGTAATACTCGCTAAAGTCCAAATCTTCAGAA 888675 36 100.0 34 .................................... AACAGGACATGAACCACAATGAGTCAGATTATCA 888745 36 100.0 33 .................................... ACCTTCTTTGGCTCCATTTGGCCATAGTTGAAC 888814 36 100.0 38 .................................... GCATTCAGTAATGCCACCCAGCCATAACCAACGCTAGG 888888 36 100.0 35 .................................... TGATTACCATTCCCAAAGAGGGCATTAATTGGCAC 888959 36 100.0 36 .................................... TGAGCAATCATATATTTTCGCGCTTGCTATTCTTGC 889031 36 100.0 35 .................................... CAGTGATCCATCCTAACTCCCTAGAACGAAGACTA 889102 36 100.0 36 .................................... TCTTCTTCTATGCTTTCGTATGTAAAATGGCCTGGG 889174 36 100.0 34 .................................... TGAGTTTGGAATCGAAGATAAAATATAAATCTGG 889244 36 100.0 35 .................................... GCACTGGCTTTCATTGGGATATGAATCAGAATATG 889315 36 100.0 37 .................................... TGGCTTTCCTGTGCGAAAGCAAATCTAGTTTTTATCC 889388 36 100.0 38 .................................... GGCTTTGGCGTACAAAATCCTTAGCTCTGTTTGGCAAC 889462 36 100.0 37 .................................... CAATCACTAAATAGCCCAGGCCATTTTACATACGAAC 889535 36 100.0 41 .................................... TAGATTTTCCTTGAATTCTACTCGCGTGTATTTGCGTGTGC 889612 36 100.0 39 .................................... TTTGTGTCTGCTCACAATCCATGTGTCATACGTTTCGGC 889687 36 100.0 35 .................................... GATGCTTCGGCAGGACGAGGTGCAGTAGCACCCCA 889758 36 100.0 34 .................................... TAGCTCCCCTTGGCGCTTGGTATGCCGACAGCAC 889828 36 100.0 33 .................................... AGCATCCGAATCTGGGCATCGACCTGCTTTGTA 889897 36 100.0 35 .................................... AATCCCATCGGATTTATCTGGTGGATTGTTAGCAC 889968 36 100.0 34 .................................... CGAGTAACGACCCAACAAGGGTTCGACAGCACTC 890038 36 100.0 35 .................................... CTGATGTAATCACGAGCAAAGTAACCAGGCTTAAC 890109 36 100.0 34 .................................... CTAGCTCACCGGCATCACATTCGTGCGATGCCTC 890179 36 100.0 35 .................................... GAGTGAGGTGTCGAGTGGAGGTGTCGAGTCAGACC 890250 36 100.0 34 .................................... TATGTAGGCTTACACCCTGGATTACTTAGGTAGC 890320 36 100.0 35 .................................... CACTTACCACTTGAGTGTCAAGTGTTGCCGCCAAC 890391 36 100.0 35 .................................... TGCAGTAGGAACCGTAAAGAGTTGTTGCGCGTTCC 890462 36 100.0 35 .................................... CTATGAACTAAATACGCTCCGTTCCATAGCTAATG 890533 36 100.0 41 .................................... GTTGCGAAAGGCGTATTAATTCTTTCCAGCGATTGGGTAGA 890610 36 100.0 38 .................................... AAAAAAGTGGCAATTACATTTTTGGCCAATTTGATGCC 890684 36 100.0 34 .................................... TAAGCCAGCATTCAGGACTGACATTTTGGGTCAA 890754 36 100.0 35 .................................... AAGTAAATTTTTATAACTTGCTATTCTCCATATAA 890825 36 100.0 41 .................................... TACCAAGACAAACCGAGACAGGACTTTCCCGTGTAATACAC 890902 36 100.0 33 .................................... GGGTTTCAAAGCAAAAAATTTTTCGCATTCCTC 890971 36 100.0 35 .................................... ACATTTCTTCACAACAGGATTGCAATCCAGCAAAG 891042 36 100.0 37 .................................... TACAAGCGGTATACAAAAGGCAAAACGACGAAAAGAC 891115 36 100.0 34 .................................... ACATTTCTTCACAACAGGATCACAATGTAGCAAA 891185 36 100.0 34 .................................... TGATGGTGTTGAAATTTCAAGCAACTACCATCGG 891255 36 100.0 39 .................................... GGCTCTGGCTTTCATGGGCAACCGATACCCGCAACTGCG 891330 36 100.0 36 .................................... CTCAGCGCTATCAGCATCTTTCATCCAGGATTCGCC 891402 36 100.0 36 .................................... TCGTATGTGAAATGGCCTGGGCTATTGAGTGACTGC 891474 36 100.0 38 .................................... ATCTTCGGGATGAATATAAAATTCTTCATAGAATCATC 891548 36 100.0 38 .................................... GTTTCTCTTATTCTGCCGGCACTCCCTGCACTGGCTAC 891622 36 100.0 36 .................................... TTAAACTCTTGGAAGAAGAATAAAGAGCATGAGTGC 891694 36 100.0 43 .................................... ACTGAATCGGCAGGCTTGAATGATTTTGCAAATAGTCCAATAC 891773 36 100.0 37 .................................... AGTGAGTAGAGCGGAGCCGGACTGAGGAGCGTACACC 891846 36 100.0 36 .................................... GACTAATCAAGCGGAAGTTAAGGAAGCGCGGCAGGC 891918 36 100.0 36 .................................... CCTGACCATCTAACGAATTTTTGCGGTTTAATAAGC 891990 36 100.0 37 .................................... CATTTCCCAGATAGCGTCCTCCCGCGCCGGCGCAAAC 892063 36 100.0 37 .................................... GATCTCTTCCACGTCGATAAACCTAACATCCATAGCC 892136 36 100.0 34 .................................... GCTAGTAATGCGACGAAAGGTTGCTTGTTTTAAC 892206 36 100.0 36 .................................... AAAGCAGTATTGGCCCGCCGGCAAGCCCAAAAATGC 892278 36 100.0 37 .................................... TTGAGTTTTTCGCTAACTTCTTCCTTCATTTTTCTCC 892351 36 100.0 36 .................................... GATGGCGGCTTTGGCTACTCGCTCTGCTATTTCTTC 892423 36 100.0 45 .................................... ATTAGATGATGCAGGTATCCGGAACGCAAACAACATCCGCTTCAC 892504 36 100.0 35 .................................... GGTTTAGTCCGTGCCGATTTTAGCTGACTTTCTTC 892575 36 100.0 36 .................................... GGTTTAGTCCGTGCCGATTTTAGCTGACTTTCTTCC 892647 36 100.0 37 .................................... GATACCCACCCCAAAATGCTACGCTGTGGCATTCATC 892720 36 100.0 36 .................................... GTGGTGCTTTCAAGCGTGTAAAAGTGAATTTTTACC 892792 36 100.0 35 .................................... AGTTAATCCCGTTAGTGTGGTGATGCCGGCAATCC 892863 36 100.0 40 .................................... TTAAAATATAGCCCTAAAGCTACGGCTGCATTGTGCCGAC 892939 36 88.9 36 ...............G.....GAA............ AAGCAGACGATATCGCCTTTAACTACACCCGTCAAC 893011 35 69.4 0 ..........A.A....TAT.GAA..A....-...G | ========== ====== ====== ====== ==================================== ============================================= ================== 77 36 99.5 36 TTGAAATTCACTTGAATCCCTATCAGGGATTGAAAC # Left flank : CCCCTGGCTAGAACGTGCGTCAGCTAGATTTAAACTCCCGGAAACCCGGCTGTTACTTTCTATCATGCTAGATTTCCCTCAAGTTTTGAGTGATCTCTCCCGCTTGTGGGGGCGGTGATCGCCGGCATCTAGCATGAGTGCCGGTTGAGTATACTATACTCTATGCTTCTGGCCAAGTTCTTTGTGATTGACTGGGAAAGGGGAGAAAGGTTTTTACAGATTTAATCGTATTTTTTGGTTGAGCCGGTGGCGCGGATGGGTAGGTGTTTGCCAGAGAGGGGGGATAAAATCGGGTTTAAACTTAGATTGTGCAAGGGTTTGAGGGCAATTATTGCTCGTATTCGATCCGCGCAATCGCTGGAATGCTTACAGATACTAGATTTTAGGTTAGTGCCGGTGATGATTTTGTTGACGCAAATCGGGTTGATAAACTACTATAAAGAGGATTCGCGCAACCGCACCTTGAAAACTACATACAGCACGGTCTTCAGACTCGCGCC # Right flank : GTTTATAAGTGCTATGCTATAGCGGTCTTTAGAAATATGAGTGCAAGCTTATAGTGTGGGTGAAGAGAGGATCGGGGCAAACTGTACCAAACCTAAAAGATAAACCGCTATAAGCGCTAAAAAGATACCCCCGCAATATCTCTACATGAATCATCTTGAGCGGCAAATATTGACTTATTAACAAATATTACTCAGAAAACCGGCATTAACCTGAATCTCTGCCTTAATTTGCCCCCAATCGCTTTCTTCTGACAGGGGTTGGGCCAGTTTCAGGAAATGCTCAAATTCTTTAAATAAGTCGCTCATTTCCTCTCACACCGGCTCGGTTATTCTGAATACAACCAGCTAGCGCGTTGCTACCCCATCACAAAGCTGACCCTCGCTTTCACTGCCGGCATTATTCGTCAGGTAATTCCTCAGCCAACCGCAACCGCGCACAATCAGACTATCTAAATCCAGATCGCCCAGACGCCACAGAATAACAGTTTTGTCGGAGCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAAATTCACTTGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //