Array 1 134697-133387 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRS01000006.1 Escherichia coli strain MOD1-EC5171 MOD1-EC5171_6_length_184980_cov_55.5232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134696 29 100.0 32 ............................. CCAGCACTGGCGCGGCCTGTGGGGGCGTGTGA 134635 29 100.0 32 ............................. CATCCATAGGCGGGTTCCTTTAGTTCATTACC 134574 29 100.0 32 ............................. GCAACCGGGAGCAACTCTGCTCTCCGCATTTG 134513 29 100.0 32 ............................. CCGAAATATCAGGAACGATTCACGCAACTAAC 134452 29 100.0 32 ............................. ACGATCGCGCTTACCGTTGCATCAGTTGCCGT 134391 29 100.0 32 ............................. CCACGACGGCAAGAGCAGACGCGAGGCCGCGA 134330 29 100.0 32 ............................. TGCTGGGTTAGAATTAGTCTCAAATATAATGC 134269 29 100.0 32 ............................. TATATAGCGTGAATTTTGCGGATTATGCACTG 134208 29 100.0 32 ............................. ACACCTAAAACAATTGCTGCTTTTTTCATTAT 134147 29 100.0 32 ............................. CTGGCGGCGGAATATTTCGCGGAAAATCCGAG 134086 29 100.0 32 ............................. TCACCCCGGCGCAGAATCGCAGGAAACTGCGG 134025 29 100.0 32 ............................. TAATAATTAGGGCAGAATCCAGTTATTTCGTA 133964 29 100.0 32 ............................. TTTTTTGTGCGTTTGCTTTTACCCCCGCAATG 133903 29 100.0 32 ............................. CAGCTTCACGCAGAAAATATTCTGGCTGATGA 133842 29 100.0 32 ............................. CGACAGCAGCAGCGGCAGCAGCGGCAGCAGCA 133781 29 100.0 32 ............................. TACTGGCACCGCTGGAAGAAATGCTGGATGAA 133720 29 100.0 32 ............................. CAGGCTTTACGAAATCCAGAACATTAAACATC 133659 29 100.0 32 ............................. CCGAACTCGTTAATCTCGCTCGTGTAGCGCTC 133598 29 100.0 32 ............................. TATTTCATCACCCCGGCAAAGGCTTTATAGAA 133537 29 100.0 32 ............................. AAATTATTCATGCCGCGGGCCTTGAACCCTGC 133476 29 100.0 32 ............................. CAATGCGCCCCCACTGTCCATCCCGATACAAC 133415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAACTCCCAACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAACTCCTGCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGTCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160999-159870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRS01000006.1 Escherichia coli strain MOD1-EC5171 MOD1-EC5171_6_length_184980_cov_55.5232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160998 29 100.0 33 ............................. GCGCAGGTGTTCGGCGAGGTGTGGGTGTCCGGC 160936 29 100.0 32 ............................. GATTACGACCCCTGACGGAGTGCGTTGCTTCT 160875 29 100.0 32 ............................. ATTTTTCAAAACAGATCGCTACTGCTCGTGCA 160814 29 100.0 32 ............................. CCAGGCAGAGAGAACAAGATTACTATGAGGCC 160753 29 100.0 32 ............................. CCCGGACGGGGAAACACAACAACCGAACCAAC 160692 29 100.0 32 ............................. GCTCTCCAGTCCACATTGCCGTCCGCGTCCTC 160631 29 100.0 32 ............................. TGAGTGACGTAAGTCATTGATAAAGTGGCGGA 160570 29 100.0 32 ............................. TTCCTACGTATGGTGGCCCGTTTGATAGCTAC 160509 29 100.0 32 ............................. GAAGAGTATGGCCTGCCTTGGGAGGTGTTCTG 160448 29 100.0 33 ............................. TTGGAAATAACGCGGCGCATAACGTCGATTTTT 160386 29 100.0 33 ............................. TTGGAAATAACGCGGCGCATAACGTCGATTTTT 160324 29 100.0 32 ............................. CTTTGTGCTGACGGAGAGCATAGCGCGGAGGT 160263 29 100.0 32 ............................. TTAGTGCACTGGATACAGGAGTGGCAAAGTGA 160202 29 100.0 32 ............................. GGACATCGCCCAAGGGGTTTCAGTCCAGCGGC 160141 29 100.0 32 ............................. ACCGGGGGATCGTTGAGGTCGTAAATCCCGCC 160080 29 100.0 32 ............................. CCGCACACGTCGAGCTGGTGGGGTTTAATGTT 160019 29 100.0 32 ............................. CGCGCGTGCCACGCTGCTGTTCGAATAACCGC 159958 29 100.0 32 ............................. GATAGGTGTTACACATATGACCAGGCACTGGC 159897 28 93.1 0 .........................-..A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTTATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATATGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGGTGAAAAGTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATAGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTTCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGCTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCGTTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGACTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGTTTCGCAAAGTGATTAATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34763-34395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRS01000007.1 Escherichia coli strain MOD1-EC5171 MOD1-EC5171_7_length_173220_cov_54.2633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 34762 28 100.0 33 ............................ GTCTCGCTCAATTAATTGCGTTTCGCTTTCGGT 34701 28 100.0 32 ............................ AAATCCTGTGGGGCGCCCGGCAGTCGAGGGAA 34641 28 100.0 32 ............................ GATTGCACGTCCTGCCCGAGGCTACCGACAGC 34581 28 100.0 32 ............................ AGTTTGCGCTGTGGTCCATAAACACAACCACG 34521 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 34422 27 85.7 0 ...G...A...............C-... | T [34403] ========== ====== ====== ====== ============================ ======================================================================= ================== 6 28 97.6 40 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTTTTTTATTTAAGGTGCATCAATGCGAAAAAAAGCCCGTACTTTCGTACGAGCTTTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACATTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGTGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 50081-49030 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRS01000007.1 Escherichia coli strain MOD1-EC5171 MOD1-EC5171_7_length_173220_cov_54.2633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50080 28 100.0 32 ............................ ACAACAAGCGATGATGTAATAATTAGGGCAGA 50020 28 100.0 32 ............................ ACGGCCCCAGCGCGATTGACGTTCCCATCACG 49960 28 100.0 32 ............................ AAAAACTGAACCTAAATTAATTTTAACTTTTT 49900 28 100.0 32 ............................ GGATTCAACTTCCCGGTCACTATGTCCGTTTG 49840 28 100.0 32 ............................ TCGCAAATCCACCACAGCGCCGGGCGCAATTC 49780 28 100.0 32 ............................ AGAAATAGAGGACGAGAAAACACCCGGCGTGA 49720 28 100.0 32 ............................ TTTAATTAAATGGGCAATTCATCGAGCGAACA 49660 28 100.0 33 ............................ CTGCTCGATGTGGCGCGTGACGTATCCGGCGAT 49599 28 100.0 32 ............................ TGCTCTCGAATCTCGCGACGATCATATTCAGT 49539 28 100.0 32 ............................ GCACTGCCGGATAACCTGAGCGTCGGCGGCTC 49479 28 96.4 32 .................T.......... AGGGGGAAACCACATGGCGCGGCTAACAACAC 49419 28 100.0 32 ............................ AACGGGTTATTTGTTGATTCTTTGCTGATTGA 49359 28 100.0 32 ............................ CCGCAAAACGTCAAAACCGCGGCTCCCGAAAC 49299 28 100.0 32 ............................ GCGCAAATCCAGCGAGCCGCCGACGCTCAGGT 49239 28 100.0 32 ............................ CTGTAAGAAAAACATTTACGCTAAAGTATAAT 49179 28 100.0 32 ............................ TATCGCCTCCGCCCAAATATCTGTATCGTCTT 49119 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 49059 28 85.7 0 ....................T...C.CT | C,A [49033,49036] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAATAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTTGATGTCTCCTGGCTCAGTCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //