Array 1 90048-88339 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXD01000008.1 Serratia oryzae strain J11-6 NODE_8_length_240783_cov_48.2053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90047 28 100.0 32 ............................ CATAGAACGAACTCAGCCCCAGCACGACGAAA 89987 28 100.0 32 ............................ TGAAATTCTCATAGTCCCAGAGCAATTAAAGT 89927 28 100.0 32 ............................ TGTTCAGAAATGAGCCTTTGAGGATGCCAGTA 89867 28 100.0 32 ............................ AAGCTGGGTAACCGTCTGGCGACCGGCGTAAA 89807 28 100.0 32 ............................ GATTCCCGATACCAAGGGAACCCGGCTGGAGA 89747 28 100.0 32 ............................ TTGTATACGGGAACCGGTTGGGTAATAAAGCG 89687 28 100.0 32 ............................ CGGCGTTCGCTGGACGGCGAACAAAGGAGCAA 89627 28 100.0 32 ............................ GACCCGGCCAAGGCGCTCGAAGCGCTGGAAAC 89567 28 100.0 32 ............................ TATGACCCGATGGCGGTTAATGAATTCCATGT 89507 28 100.0 32 ............................ CGGCGAGGGGGTGATCGATGAATGAATACCTT 89447 28 100.0 32 ............................ TGCTGGCACGGCAAGCAATGACGTACAACTTA 89387 28 100.0 32 ............................ TGGTCGCTGATCACCACGCGGCTCGCGCTGCT 89327 28 100.0 32 ............................ CGGTATTTTGGGGGAGTTGTTCATAAAGTTCG 89267 28 100.0 32 ............................ ATGAGCCCCTTGCATACCTGGCAGGCTGGCTA 89207 28 100.0 32 ............................ ATGGGATGGCACCGTTGACCAGGGGGGCGCAA 89147 28 100.0 32 ............................ AATACTATTCTGCTTATCGCTGAGCAAATGGT 89087 28 100.0 32 ............................ ATGCAACAGTACGCGCGCGCACGCGAGGTTCA 89027 28 100.0 32 ............................ GACGAAGAGTTAGACCGCCGCCTTCAGGAGTT 88967 28 100.0 32 ............................ TGTAATGCCGAATACTGTTCCTCGGTTGGTAG 88907 28 100.0 32 ............................ TTCCGGCATATCGTCAGCATCAATGCCCAAAT 88847 28 100.0 32 ............................ AAGGTCAAAGCCGAAAGCGCCAGCAACGAGCA 88787 28 100.0 32 ............................ TGAGCGCGGGGAACCAGGACCGCCTGGCGCAA 88727 28 100.0 33 ............................ CAATGTTGAATGCCAGCGACACCATGGCGTCGA 88666 28 100.0 32 ............................ TGGTGTATGACGTAGGACCGGCAGCGCTGATA 88606 28 100.0 32 ............................ CTCGAGTCCTGCGAATTTGATGAGCAGGAGTA 88546 28 100.0 32 ............................ ACCAATCCAGAACACTACCGGCTCATAGAAGC 88486 28 100.0 32 ............................ TGTTTGTTGTTTCCGCCTCGGAATACGGCATC 88426 28 100.0 32 ............................ CAGGGCCATGCGATGATTATCGTCACGAAAGC 88366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCGCTCAGTGCATTAGATGCGCAACCATGGCGTAAAGGGCTGCGTGATAATACTGAGCACAGCGGCATTTTACCGGTGCCGGAGAAAGTGAAATACCGCACCGTGCGGCGCGTGCAGCCGAAGAGCAACGCGGAACGCTTACGCCGCCGTTCGGTGAACAAAGGGTGGCTGACGGAAGAAGAGGCGCGTCTGCGTATTCCTGATTCAGTAGAAAAACGCACATCTCTGCCCTTTATTCGGCTGAAGAGTTTATCCAGCGATCAAACCTTTCTATTGTTTATCGAGCAGGGGCCGATTGGCGATAGCGCAACCGAAGGAGCATTCAGCGCATATGGTTTAAGCGCAGTAGCGACCATCCCGTGGTTTTGACCCTAATTTTACGGCCGCTCCTAACTTATTGATTTAATAGGTTAGGATTGGCTGCTTGTAAAAAAGGGTTTTTTAACAGGTTTGCCTGTTGTTGTTTAGCTAACAGTAGGTTAGAAACGATCTGCAACA # Right flank : ACGCTGTAGAAGTTATCTAAATGGCCGCAAAAGTTCACTACCGTATAAAATCACTGTGGTGCACATCGGTAATTTCACGTGTGGTTTCAAAACAAGGTAAGTTTTTATTATTGGCGGCAATGTTTAATTTTTTCATTTTGCTTATTATTTAGACAAAAATCCCGTCGGAAAATAATGGCTTTGACGAAAAATATTTTCGCTAAAATAAAGGTATGCGCTAGCGTGACAACGTTCAACGACATGACACGCTGGCCGTTTATTTTTGCGAAATATATTTTTTCGCTCTTATTCGTACATGGAAAATCGCCAAGTGAGCTTTACCTTAAATAAAGGAAAAGTGATGCCGCCGCCGTTAGGCGCAAGAAATCAGCATTGACACCGCGCGTTCTGTAATACCCAATAAGAACCTAAAGGAGGAAGTTATCTGAAGTTAAAGAAGGCAAAGCTAAAGCAACTGCGGTGCGCCATCATCATATGCGTGGTCCGTCGGATATGTGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 271988-270677 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXD01000003.1 Serratia oryzae strain J11-6 NODE_3_length_529949_cov_37.7803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271987 29 100.0 32 ............................. TGTATTTAGATATTCTTTCTTAATAGTGTAGT 271926 29 100.0 32 ............................. AGTCGTTTCGCCAGTACTTCCCAGCCAGTGAG 271865 29 100.0 32 ............................. GTGATAGACCTTGCCCTTGCTGCCTATCTTGG 271804 29 100.0 32 ............................. ATACATGGCCCCGGCTATCTGGTCTGTTTCTT 271743 29 100.0 32 ............................. CTCGTGGGCAATGCGATAGAGCGCGTCGAACT 271682 29 100.0 32 ............................. AAACTAGGTGCAGTATTGCCTAGTTTTTTTGT 271621 29 100.0 32 ............................. CACCTGAGCCGGGCTTGTGCCTGTGATTACCG 271560 29 100.0 32 ............................. TTCTTTGTATCGGTCTTTCATTTCTGCATGCA 271499 29 100.0 32 ............................. GCGGCTACACCAGTGAGAAAGGCCAGCTGAAG 271438 29 100.0 32 ............................. CCAGAATCCCATCCGGCTTTTGTCATCATCCA 271377 29 100.0 32 ............................. ATAGCTATAGTAGAAACACGAAAACAAAGGGG 271316 29 96.6 32 ............................T GATGCTGAGTTTGCTCATTATCGCATCATGGA 271255 29 100.0 32 ............................. ACTATAACTCAGTGGTCGGATGAGGTGCGCAA 271194 29 96.6 32 .............T............... TTGTGCCGCCGTCTTTCCTGGGCCGCGAGTAC 271133 29 100.0 32 ............................. GTGATATGGAAATGAATTATCCAGTTCGACAA 271072 29 100.0 32 ............................. CAGGGACGCATCACTCACGTTCCGCATCTTGC 271011 29 100.0 32 ............................. GCGGCTACATAAAATCACGCACCGGGAATAAT 270950 29 100.0 33 ............................. GAAAATGCCATTGTCGGGTATATTCCGGTGTGG 270888 29 100.0 32 ............................. TTGGAACTGCAACCCCTAGGTTGATAAACTCA 270827 29 100.0 32 ............................. GGCATATACGGGGTTGCCTCTCACTGTGTCAG 270766 29 100.0 32 ............................. GTCGATGGGGAGTGATATGTCAGTGCTAAAGG 270705 29 93.1 0 ............T...............A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 CTATTCCCCGCGCCAGCGGGGATGAACCG # Left flank : CCCGTTAATTGAAGAGGTGCTTGCCGCTGGGGGGATCACCCCGCCTGAGTCTCCCAAGGATGCTCAGCCGCCCGCCATTCCCGAACCGACCGGTATGGGGGACGCTGGTCACAGGAGTCAGTGATGAGTATGTTGGTCGTCGTAACCGAAGATGTGCCCCCGCGTTTGCGTGGTCGGCTTGCTATCTGGTTGCTGGAAGTCCGTGCAGGCGTTTATGTGGGGGATGTCTCGCGCCGGGTACGAGAGATGATCTGGCAGCAGTGCGAGGCGTTGGTGGAGCAGGGCAATATCGTGATGGCATGGCCCACTAACAACGACTCAGGGTTTGAGTTTCAAACCTTGGGGGCAAATCGAAGGATGCCGGTGGACTTGGATGGCTGTCGGTTAGTCTCTTTTCTGCCTGTTTAAAATCAATAGGTTATTGTTCATTAACAATCTTGATTAGTTGGTGGTTTTTTATGTCTTGAAAAATCCATTTAAATCAATAATATCTGTTAAGT # Right flank : CGTAGTCAGGAATGATTGTAAGCGTAAACCCAGCGCCGTATGTAGTCATTAGACGTCAATACGGCACTCACTGATCGCTTACTATTGGGATAGCCTCTGAGACCTGTCATTTTGCTACGGGAAGCGTCTGCGTGGTTCCACGATGTTCTAAGCTATCGATGTAATCAGCATACCACTGCATCATTTCCCGTCGACCATCGAGGTACTGGGCATGATTATAAGTACCGCGGATACTGTTCTTGTCGACGTGCGCCAATTGGAGCTCGATCCAGGCCGTATTGAACCCTCTTTCATGCAGAATGGTACTAAACGTATGCCGAAAGCCATGACCCGTAGCTTTGCCATCATAACCGATACGTTTTAGTACCATGTTAATGCTGGCGTCACTCATTGGTTTGTTAACATCATTGCGCCCAGGGAAAACCAGTCGATAGCTGCCTGTGATTGCTTGCAGTTCTCGCAGGATAGTGACGACCTGTCTTGACAGTGGAACCAGATGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //