Array 1 5326-6573 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRZ01000033.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 67 NODE_33_length_53128_cov_13.4324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5326 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 5387 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 5448 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 5509 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 5570 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 5631 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 5692 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 5753 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 5814 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 5875 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 5936 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 5997 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 6058 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 6119 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 6180 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 6241 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 6302 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 6363 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 6424 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 6485 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6546 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22830-24325 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRZ01000033.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 67 NODE_33_length_53128_cov_13.4324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22830 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 22891 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 22952 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 23013 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 23074 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 23135 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 23196 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 23257 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 23318 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 23379 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 23440 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 23501 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 23562 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 23624 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 23685 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 23746 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 23807 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 23868 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 23929 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 23990 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 24052 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 24113 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24174 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24235 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 24296 29 100.0 0 ............................. | A [24323] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //