Array 1 1-242 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811061.1 Rothia sp. HMSC073B08 Scaffold79, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 1 26 100.0 46 .......................... GAGGGTATTCGGTGAAGGTGCCCGGCGGTTCCGAGGAATTGATTTC 73 26 100.0 46 .......................... GAGGGCCTACCGCTGCCGCTTCACCCCCATCATGAAGGCCAATTTC 145 26 100.0 46 .......................... GAGGGTAATCTTTTCGTCATCAAAGACGATCACAAGGCGGGATTTC 217 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================== ================== 4 26 100.0 46 CCTTCCTTTTCGGAGGGACTTTCATT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCTTTTCGGAGGGACTTTCATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 465-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811081.1 Rothia sp. HMSC073B08 Scaffold282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 464 36 100.0 36 .................................... TGCCCAATAACTTCTACCAATGGCACCACAAAAGCG 392 36 100.0 35 .................................... CTACATCGACGGGTTCGGTCAGCCTCAGGTACACC 321 36 100.0 36 .................................... TTTTCCGGTGGGCTTACCCTCTGCATCTTTCAGCTG 249 36 100.0 37 .................................... AAGGCGAGGCGTGACCGACTACCTCGTGTACACCACC 176 36 100.0 38 .................................... GCCGCGCAAGTTTCGGCTATGACGGGTATCCCCGCGTC 102 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 37 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGTAGAAGGAAGGGGCTAGATAATGGCTTCTCTGACCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTTCTGCATGTGAACCGAGGCCGCAAGGAGCTGAACATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGACAGAAACCGACTTCTCACGGCTTGACATCAACCTAATTTCCCTTCCTTTTCGGAGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTTTCGGAGGGACTTTCATTGAGGGTTGTTGGCATATGTTTACCTTTCTAATTCGTTATG # Right flank : GTACTATGCCGCCGTATTTCAGGTATGGAGTAAACCTATTTCCCTTCCTTTTCGGAGGGACTTTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1-249 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811086.1 Rothia sp. HMSC073B08 Scaffold319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1 30 100.0 42 .............................. CAGAATGGGCTCAACGTTGGGAGGAGGCAAACCCAAATTTCC 73 30 100.0 45 .............................. GCCAAGACTGCACGCACTCAAGACGTTCAAGCTTTGCAAATTTCC 148 30 100.0 42 .............................. ATTGGTTGGGGTCGAGAATGAGGGTTATCCGTTCTGATTTCC 220 30 73.3 0 ......................NNNNNNNN | ========== ====== ====== ====== ============================== ============================================= ================== 4 30 93.3 43 CCGCCTTCGGGTGGGGACTTTCATTGAGGC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGTGGGGACTTTCATTGAGGCCCATGTAAAATGTGTAACGACCCCGGGGCATACCCATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCCCGCCGGTGAGCCCATTCTGATATGATGGTCTCAATATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTGCCCACACAGCAACGACGCCCCGAACTTCAGTTAGAATTTCCCCGCCTTCGGGTGGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCTTCGGGTGGGGACTTTCATTGAGGCACGCTATGCCGCCGCGCATAACCTACCCTGTAATATC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCTTCGGGTGGGGACTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1089-1408 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811086.1 Rothia sp. HMSC073B08 Scaffold319, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1089 36 83.3 34 NNNNNN.............................. CTTTTGGACCTGGCGAAAACACCCATTGGCCGCA 1159 36 100.0 36 .................................... GAAGCCGCCAAGCGAGGAGCTGCGGCCTGATGCGAA 1231 36 100.0 35 .................................... TTGGGGGGCGGGGGTGGTCAGTGAGGGGGTTTGAG 1302 36 100.0 35 .................................... GCACAGCTTGTTGAGCGTTTGGCGACGAATGTTCG 1373 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 93.3 35 ATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCTTCGGGTGGGGACTTTCATTGAGGCACGCTATGCCGCCGCGCATAACCTACCCTGTAATATCTGATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTCGCGACAAAATGTCCCGCTATCAGCCCCTGAGATATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTGACAATGTGAGCAGCGAAAGCATTAAGAATTGCTATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCGACGAACAGTCTTATCGGTCTTGGTGCTGATTTGGCATTTCCCCGCCTTCGGGTGGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGTGGGGACTTTCATTGAGGCGAATGGCAGGTACATATCGAACCAGCACCAGAAGGCGCATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCAACCTGGTGCTCAGCCACAAGCGCGAGGACGGCAGCATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCGCCGCGTACCCTCGCCACGTGGGAAAGGAGGCCGCATTTCCCCGCCTTCGGGTGGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGTGGGGACTTTCATTGAGGCGCTATCGACCCTAAACCGGACGGCGAAATCACTAAA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 2254-2787 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811086.1 Rothia sp. HMSC073B08 Scaffold319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================= ================== 2254 30 100.0 43 .............................. GGTGGTTTTGGCATATAGGGGGCGGGGGTGGTCGGTGATTTCC 2327 30 100.0 43 .............................. CGTCCGGCGATCCGTTCCAGCCGTCAGGGGACCACAAATTTCC 2400 30 96.7 47 ...........C.................. GCCCTGGCGCGAAACGGCACAGTTCGTGCGAGAACACGGAGATTTCC 2477 30 90.0 41 .......A...C.................T ACCTTAACGTTCGCGGCACTCCAGAGCTTGCGCATTATTTC 2548 30 86.7 177 ....T..G...C..........C....... GCGACCCAGGCAGTCCGCCCATACGACTGGAGCTCAGATTTCTCCGCCTTCGGATGACGATGCTGCGGTAGGCACAGATATTGCGTGATGTACACTTTGGATACGTAATCTGCGCGAGTCTCGTGCCGTAACAGTCTCTGCTACGCCGTAACATGCTAGTTTTAGCTAGCTATTTCT T,CG [2550,2556] 2758 30 93.3 0 ....T...A..................... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================= ================== 6 30 94.4 70 CCGCCTTCGGGTGGGGACTTTCATTGAGGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGTGGGGACTTTCATTGAGGCGCTATCGACCCTAAACCGGACGGCGAAATCACTAAATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCTCGCCAAAGGCGAGAACGACGCAACCCCGGCAGTGCTATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGTAGCGATACCTACCCCGGCGTGCCTATTGTCGAGGTTATTTCCCCGCCTTCGGGTGGGGACTTTCATTGAGGCAGCCGAGTGGTCATCGACGCCTACCAGAACCCCCGCTATTTCCCCGCCTTCGGGTGGGGACTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTACCCCAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGTCTTCGGGTGGGGACTTTCATTGAGGCCAGCCGTAGAATTCGTCACGGTATGCTGTGGCTTCATTTCCCCTCCTTCGGGTGAGGGATCTTCAGTGCGATTCTGAGCATGAATCGCGAAATCTCGCGCGGGTTGCGTAGCCCCGGTTTAGAAACCAGATTGGTTTCTAAACCGGGGCTCTTCTCTTTAAATATGAAGATGGGGCTATATGTGACACCTACTGCGGATTTCTCAAGGCAGCTATCTGAGTCTGAAATGACCAAACTGGATGCGTGTAATCTGTAACAGCGCTATGGTGAGATTATGAGCGAAGGACAGAACCGATTGCGTCGCAGAGGAGGGGCAGGGATAATGAAGATATCTGATGATTTCTTGGGTATACGCT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCTTCGGGTGGGGACTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 1-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811079.1 Rothia sp. HMSC073B08 Scaffold255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1 30 83.3 37 ------.............................. CCGGAAGTCCAAGAATTGACGTGCAGTCCTGTGTGTC 68 36 100.0 37 .................................... GACCGTTCTCACCCGACAAGGAAGAGAGCCAGGCCGC 141 36 100.0 37 .................................... ACCGGGCACCACCTCAGACATGGTTACGCCCCTATGC 214 36 100.0 37 .................................... AGCATGAGGGGTTACCTCTTTTCTTTGTTGTAGTTGA 287 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 93.3 37 GCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAAT # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGTCCCCACCCGAAGGCGGGGAAATGAAAATTCCCACGCCAGAGCACAGAAAAGGGGCGGGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATTTGAGCTTCCACATCGTATAGCTCGTGCATTCGCCGCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAATTTCAAACGCCACAGTGCAAAGTCGGTGCAGTTCACGCCTCAATGAAAGTCCCCACCCGAAGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCCACCCGAAGGCGGGGAAATAGCCACCCGAAACTGACCCGCAATTATGCGGCAGAAAC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCCACCCGAAGGCGGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 5667-5409 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811079.1 Rothia sp. HMSC073B08 Scaffold255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5666 36 100.0 37 .................................... ATTCAAAGGGGTAAGGAAGCTGGACATCCGAGGCAAC 5593 36 100.0 41 .................................... ATGCTGAACATTCCCAACAAATTTATTCGCGACGAGTTGAG 5516 36 100.0 36 .................................... TTTAATATCGCGTGCCCGGGTCGTTATTACGATCAG 5444 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 100.0 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : CTTCCTTTTCGGAGGGACTTTCATTGAGGGCCGCCGCACATCTGACGCGAACAACTGGCGCCGTGCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCAGGGTTCAGGGCGTTGATGGTCAGTGGTCTTCGCATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGATCTCGAATGAGCGAGTTTCTGCGGTGAAGTATTTCATTTCCCTTCCTTTTCGGAGGGACTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCCACAGGTTCTCGGGCGGGAAGCTGCAAGCAAT # Right flank : TCAGATTCGCCGAGCATGCCCTCACGAGCCAACGCAGATTTCCCTTCCTTCTGGGAAGGGCTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCGAAGACGCACGAGCCGCGTGCCCTACAGGTGCCGCGGATTTCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCAAAACCCCCCACCTTGCGCTACAAAATCCCCCACCTTATTTCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCCCAACTTACCTGGGTATTTGGTGCCTGGATTTTTGGCGATTTCCCTTCCTTCTGGGAAGGGCTTTCATTGAGGCGGTACTCGCGCTCCTCGGTCTTCAACCTGCGCGCATTTCCCTGCCTTTTCGATGGGGCTTTCATTGAGGACAGTCGACGGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 5832-6070 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811079.1 Rothia sp. HMSC073B08 Scaffold255, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 5832 24 100.0 48 ........................ GGAAATGAAATACTTCACCGCAGAAACTCGCTCATTCGAGATCCCTCA 5904 24 100.0 47 ........................ GGAAATGCGAAGACCACTGACCATCAACGCCCTGAACCCTGCCCTCA 5975 24 100.0 48 ........................ GGAAATGCACGGCGCCAGTTGTTCGCGTCAGATGTGCGGCGGCCCTCA 6047 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================ ================== 4 24 100.0 48 ATGAAAGTCCCTCCGAAAAGGAAG # Left flank : NNNNNNNNNAATGAAAGCCCTTCCCAGAAGGAAGGGAAATCTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTGATCGTAATAACGACCCGGGCACGCGATATTAAACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTCAACTCGTCGCGAATAAATTTGTTGGGAATGTTCAGCATCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGTTGCCTCGGATGTCCAGCTTCCTTACCCCTTTGAATCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGATTGCTTGCAGCTTCCCGCCCGAGAACCTGTGGGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAAAGTCCCTCCGAAAAGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //