Array 1 1282-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000110.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1281 30 100.0 38 .............................. AAAATAAATGAAGCTCTGCAACTTCAACCTCTAATTCT 1213 30 100.0 37 .............................. ATAGATAGGAACTAACTGAATCGGAAGGTGGATAACT 1146 30 100.0 37 .............................. TACCTACTGGACTGACAGGACAAGCTCTACGTAGAGA 1079 30 100.0 38 .............................. AATAGTAACTTCAGATAATTCTACAGACGGTCTATTTG 1011 30 100.0 35 .............................. ATTTTCCATTTTTCCTCATCTCATAACGACTTTTA 946 30 100.0 38 .............................. TTTCTGCAGCAATGAAAAAAAATTGAATTTTCTTTAGG 878 30 100.0 38 .............................. ACGAGCCCAGGATTTTGGACTGGGAGCTCACAGAGGGT 810 30 100.0 38 .............................. ACATATATTCTACCTATTTTACTAGGTAGAACCACAGA 742 30 100.0 36 .............................. TAAGAGACGACGACCTCCTCACCCGAGGGGGTGAAG 676 30 100.0 39 .............................. CTGGAAATCCCTCTCCTGACCCTCTGTGAGCTCCCAGTC 607 30 100.0 44 .............................. ACAAACTCTCTTGGCAGTCATTGTTAGCAGAGAACCAAGCAGAG 533 30 100.0 36 .............................. TACACTGTACAGCAAGACGATGCAAATCAACACACT 467 30 100.0 36 .............................. TGGAGGTGCCAAAGATAGTCGAGTTTCAGGGCGAGA 401 30 100.0 38 .............................. CCCTAGACTCCAGAGTCTCCCAGGCGGGGTGTGTTTTC 333 30 100.0 36 .............................. GTTCTAGGTTTCTCAGACCACACCAAATGATCGCAG 267 30 100.0 34 .............................. CGTAAAACAGTCGATATTCTCCCCCTCCCCTGCA 203 30 100.0 39 .............................. CCAGGGGACTTTAGCCTCTGATAGGTCAGCCCAGGTTGT 134 30 100.0 37 .............................. GTACAGCCCCCCTCCTGGATATTTCAAAAATGATTTA 67 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 19 30 100.0 38 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : CAATTGGGATTTTCCGCGGATCCCGCGGGTACTTTAT # Right flank : CCTTCCAGTGTAGACAGAGATGTATTTGATAAAGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1131-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000116.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1130 30 100.0 33 .............................. TTTTTGGTTTGGATGTTTTGGGTGTTCATTTTA 1067 30 100.0 38 .............................. TTGTACTCCTAGCGTGAGAAGTTAGTGGATTCGTTTGT 999 30 100.0 35 .............................. AGATTTTTTCTGCCCACGTTCCCCGCGGATTTCCG 934 30 100.0 38 .............................. AATGCCTAAAAGAGTGGGGCCTTTAATAGCCTATTCGA 866 30 100.0 36 .............................. GCCTGGAATCGAATATAATGGGTGGTAGGAATGTAT 800 30 100.0 37 .............................. ATTCTGTGATAATTCCAATGGGGAAGAGAAGTAGTAA 733 30 100.0 34 .............................. AATGACAGGGTTCGGGGCATTATGGGAACCCGAA 669 30 100.0 35 .............................. GTTGAGCCGAAAGATATACCTCGTTTTCATTTTTC 604 30 100.0 35 .............................. TGGCTCACACACGGAAAACGGATGGGCTGAAATAT 539 30 100.0 36 .............................. TGATAATGGGACCTGGCATAGGTACAGCATCACACC 473 30 100.0 39 .............................. ATCAAGCCGAACGCCAGTGGTATAAACGCTATGTAGAAT 404 30 100.0 37 .............................. AAAAACTTTTCTATCTTTAGTAATACTTCTTCTTTTC 337 30 100.0 36 .............................. CCATCGCTAAGGGCAAGATAACAGAAGGGGTAGAAT 271 30 100.0 38 .............................. TAATCAAAGTTGTCCGCCAATTAAACCACCTAGAGTTG 203 30 100.0 38 .............................. ACTTTGACCGGAGGACTCTCACCCTTCGTAGAGTCCTT 135 30 100.0 36 .............................. GATGAAGTCATAGATGTAAATGAAGAAGAGCCAATT 69 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 100.0 36 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : TCAATATTCATCATGATATATCCTTCTTTTTCATCC # Right flank : CCAAGTCCTTCTAGGACTTCTTCAAAATATTTACCTAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 39-1141 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000117.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 39 30 100.0 38 .............................. ATGAAGTGCCACATGACGTTGACGCCAGAAAACCATTC 107 30 100.0 35 .............................. AAACTGGTCTACGTTACTCGGTACATCTGGTCCAT 172 30 100.0 37 .............................. TAACGTACACACATATAAGGCATAATTTGTAATTCCT 239 30 100.0 36 .............................. CAGTCCCGTGGTGTTCTGTGGTTGCGTTATAGGATA 305 30 100.0 37 .............................. CTATGGCACTGGATCCCGTGATGGTTCCCACGGGAAG 372 30 100.0 37 .............................. TGAAGAAAATGGAATATGACAACTTGTCTGGCATTTA 439 30 100.0 44 .............................. CCTGGGCGTCCGTCCCGCCCAGGGTTTCCCTCTTAGGGTGGCTA 513 30 100.0 38 .............................. TCGAAAGATGTAGACGAAACTACCAGGTTGATAGAAAC 581 30 100.0 36 .............................. ACGAAGTACCTGACCAAAACGGTCATACAAGGCGTC 647 30 100.0 35 .............................. GGCTTCCGCGTCTATCTTCAACCATGAGGAGATTA 712 30 100.0 38 .............................. AGTGATCACTCACGGTATTGAAATAGAGGTCATGGGGA 780 30 100.0 38 .............................. CAGGAATGCCAAAAATTCGAAAATGCCGTGGAAAGGCA 848 30 100.0 37 .............................. CTTATACGCCAAAATGCCGGTCTTTTTATCGTTTCGA 915 30 100.0 36 .............................. GAGAGACTCGGTAGACCACTCAGCACTAGGATGGCT 981 30 100.0 36 .............................. GAGCTTCTGCGGTCCACTGGTCCTCCTGTGGAGAAT 1047 30 100.0 36 .............................. AGCATTCTAGAAATCTCTCTTCCTTACCATACTTTC 1113 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ============================================ ================== 17 30 99.8 37 GTTTCAAGCCCTCTAAGGATCTCTACAAAC # Left flank : CTGTGAGAAGAAGAAGTGAGAAGTGAGGAGAAGAGTGGG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCCCTCTAAGGATCTCTACAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 946-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000122.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 945 30 100.0 37 .............................. ACGGGTAGAGATAGCGGGGGTAACAGATATCCCCGGA 878 30 100.0 38 .............................. ATAAAAACACGTGCTGGTACTTTCTCCAGCTGTAAAAG 810 30 100.0 39 .............................. TTCCTTTTAGCCCATTTAGAATTTGTATCAGCCCATCTA 741 30 100.0 40 .............................. GGGAGTCTTATGAGCCTTAGGAGGTTTTTCCATATCCCTC 671 30 100.0 36 .............................. TCTAAACAGTGTTTGAACGGCAGACAGGCAGGACAG 605 30 100.0 37 .............................. ATAAAATTTCTCAACAATATATTGAATATGCAAATAA 538 30 100.0 37 .............................. ACGCCGTCTTCCGTGATATTCCACAGGTAAGCAGACC 471 30 100.0 40 .............................. CCACACCTTTCCCCAAGACCCCGAGACCCGCAAGTTGGGT 401 30 100.0 38 .............................. CACTTACTGGTTCAAGGAACCCTATAACGCAATAAAGG 333 30 100.0 37 .............................. TTGGAACTAGGGGAGGAGTTAAATATTTTGACGAAAA 266 30 100.0 38 .............................. AATACCCCCAAAGCAAATAACGTAATGCGGTAGGGGGG 198 30 100.0 36 .............................. AGTTTAGCCAACAAAGAAAGGACGTCTATTAAGACG 132 30 100.0 37 .............................. AAAATCCCTTCCCTTGGAACCCCTTCTATGCAACGCT 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 100.0 38 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : CCTTAGAGGGCATTGAACATAAATAAAAAAAAAAAGTTATTCACGGGAAACTAAAA # Right flank : CTTGGGAAATCCAAAATAAAGGAATAAAACCAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 32-934 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000123.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 32 30 100.0 34 .............................. ACGTAATGAAGGGAAATTTCCTTGTCTCAACTAA 96 30 100.0 37 .............................. TCTTCTCCGACTTTTTCTGTCGTTGTGTCAAGGTAGA 163 30 100.0 37 .............................. CCACACTGCGTCTCTGCTTCTAAATGGAGCCTCATGT 230 30 100.0 38 .............................. AAGATCGTCAAATACTCTAAGTATGATTCTGAATAATC 298 30 100.0 38 .............................. TAGAAGATTTTATACAAAATCAGTTTTTAGAGGCTAAA 366 30 100.0 39 .............................. GACGTAGCAGCATCATTTCTAAGACCAGCTGATGTCGGA 435 30 100.0 35 .............................. AAATAAATTCAAGTTCTTTATTGCCTCCTTATATC 500 30 100.0 36 .............................. CACAAGAAGAGGATAAGAGGGGAAGAAGGAAAAGAG 566 30 100.0 39 .............................. TGAGAACCTTTCCCTCTTCGAGACGTATTGACAAGTTAA 635 30 100.0 38 .............................. CAAACATAGACATGATAAGACAGCTCCTCCCAAGCGAT 703 30 100.0 37 .............................. CCTCTCTAGCAAATTTCTCCTTATCCATGTCATAGTC 770 30 100.0 36 .............................. ATTTATTTCTTTGTGCTTCTCCAGTCAAACCACAGA 836 30 100.0 39 .............................. ACAAAGCGAAAATAATAGAAATAAGTGAAGAGGAACTAA 905 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 100.0 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : TCCAGAAATGGTGAGGGGGGCTATTCTCTCCG # Right flank : TCATGTCTACTTATGAAAAATGGGATAGTATCACCAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 35-603 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000153.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 35 30 100.0 39 .............................. AGTTTCCTAGGGGGAAGCCTATCTAGTGCTCTTCTTCTG 104 29 93.3 37 T....................-........ GCCTACATACATTACCAACTCTCTGTCGAAGGACCTA 170 30 100.0 36 .............................. AGAAGCTCTGGAAATTCAATGTTTCCGTCGTTAGTG 236 30 100.0 36 .............................. AGAGAAATCTATCTCTATCGGGACTACGTCCTCATC 302 30 100.0 39 .............................. TCGAAATATTTCATAAATAAAAATAGAAAGAAGAAAAGG 371 30 96.7 39 .........A.................... TCAGAAAAGGACCAGGGAATGAGATAGGCCCTAAGATGG 440 30 96.7 36 .........A.................... TGAGAAAGGGGCGAAGGATAGAGAAAGAACCGCCAA 506 30 96.7 38 .........A.................... AAGAATCTGTATTTGTAATTGCGGGGGCAATACCCCCA 574 30 96.7 0 .........A.................... | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 97.8 38 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : AAAAAATAGAAATAACTTTACCAACAGTCTTCTAG # Right flank : ACGTAGTCGTCGCTGAACATCGTCCCGCTCATCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : GTTTGTAGAAATCCTTAGAGGGCTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 39-469 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000166.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 39 30 100.0 35 .............................. ACAATAATATGAATGGTTATGGACGAAGGAAAAAG 104 30 100.0 38 .............................. TCATAAAGCACTCTCAAAACTTCTATCTCATCTTCGTC 172 30 100.0 35 .............................. CATCTCCTTCAGAGATATTTCTGAAAAACCGAGAG 237 30 100.0 36 .............................. TAGAATTCTCTGCCAAAAGAACGACAAACTGGGGAG 303 30 100.0 38 .............................. ACTATAATGAGCATATGCAAACAGCTACGTGTCACGTA 371 30 100.0 38 .............................. GTTTAGTCGTGCATTCTAACCCTCTCTGAGTTAGCTGA 439 30 100.0 0 .............................. | C [467] ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 37 GTTTCAAGCCCTCTAAGGATCTCTACAAAC # Left flank : CAGTCCACAACCCTCAACGAAACGGAACGACTGAATGGG # Right flank : GGTAGGGCAGCTTGGACGTTACAGCAGAACTTAGACGGTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGCCCTCTAAGGATCTCTACAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 9356-8437 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000043.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 9355 25 100.0 37 ......................... TCAAGACATTCTTAATGTCAGACATAATCAGTGTCAT 9293 25 100.0 39 ......................... ATTATCTTCTTGACAGTACCATCTTTTAGCGATATCTCT 9229 24 96.0 39 ......-.................. GAGACAGAGGCGGGGATGATAGTGATCCCGTCTTTCTTT 9166 25 100.0 38 ......................... AAAATTAATCCATTTGATAAAAATACTGAACCATACAT 9103 25 100.0 41 ......................... GCATAGTTTCTCTCCGGGGAGGACGATTTTTCGTCCTTCAT 9037 25 100.0 36 ......................... ATAACCCCTTTAGCATCGTCATAGTATAGCATTACT 8976 25 100.0 40 ......................... TTCGCTAGGAACTTACTAGGTAAATTGAATTGCAACAAAT 8911 25 100.0 45 ......................... GGTAACATTGGTATGGGCATCATAAAAGCATGCTCATACATCCCT 8841 25 100.0 34 ......................... TCATCGCCTTGATCCAATGGGATACTATATGTGT 8782 24 96.0 40 ......-.................. CTTCTTTGTCTTTCTCTCATATTGTGCAGTTCATCTAAAA 8718 25 100.0 40 ......................... GATGTGTAAGCCTTTGGGATCAGCTCCTTGCCTATAATTT 8653 25 100.0 40 ......................... TCTATTATTCCTTTATCGAACCACACTATCCCTCGGTCGG 8588 25 100.0 38 ......................... ACCTGAAAGGCAAAATACTGATACTTGTTTGCTTCTTC 8525 25 96.0 39 A........................ TTAACAAACTGGAAAAAGAAGGGATAGTAAAGAAGAAAA 8461 25 96.0 0 ............G............ | ========== ====== ====== ====== ========================= ============================================= ================== 15 25 98.9 39 GTTGAACCCATAACGGGATTGAAAG # Left flank : TTGAACATTACACCTACAACATGTAAACCATCGTTGTT # Right flank : AGTAGTCGTTCTTGATAGTGAGTTTAACCAACTAATCAAGCATCTATCCACGTCATACAAAGATGATATTTATTACTTATCGCAAAACTCCTTTCTAAGTATAGAATTGTTTATCTACATAAAATATATAATAAAATTCTATATTTAAGTGAAAAATAAATATCTGAATAACATAAATTTATACTACGTTTACCCTTCTATAGACAGATGATATTCGCCTTCCGCTCCACATTTCCTCTAGTCCCACATTAAGGTTCTGGGAAAGGAACTTTACGAAGTTCTCTTCGTCAACCCAGGAAGGAACTTGAACCTTGTATATCTTGTCTATATCTCTGCCCCAATAATAGTAAATCGTTATTAACAATGAAATTAGATCGTAATAGTTGAAGTGTATTTCCTTGGGCAAACCGGGAAATTGAAGTGAAATCCCTGGGACCGGATAACCAAGAACGCCCTGACTCTTCTCTCCCCTTGATCTCGTCGTACTCGTACTCCAGTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 40-1357 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000061.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 40 25 100.0 40 ......................... CTCAATTTCTTATCCATTTTACCGTTATGTGTGTTTCCAT 105 25 100.0 41 ......................... CTTCAAAGTGGGCCATGCAGAATGGGCATACGTATCTATGA 171 25 100.0 41 ......................... CCTATCCACTTCTTTAACAATTGTAAATCCTCTTGGTCAAA 237 25 100.0 42 ......................... GTTAAATCCATTTGAAATCACCGCTAAACATGAAGAATATCA 304 25 100.0 38 ......................... CTCAGGCCGCAGGGCCAGAAAAGGAGCTGAGGATCATA 367 25 100.0 39 ......................... AGAGAAATAATGCGAATAAAACTGAAAATGATAAGTATC 431 25 100.0 40 ......................... TGTGTTTGGATAGTTTTGGTTATGTGTTTGTTTCTGGGTT 496 25 100.0 41 ......................... GTGGATCCTTACGTCCTAATGAGAAGAACGAATGAAACTAA 562 25 100.0 42 ......................... ATAGTGGAATATCTTCTTAAAACATCTTTCAATAGTTGAATG 629 25 100.0 40 ......................... ATATCATAACTCCAGAAACCGCAAATATGACATTCGTACA 694 25 100.0 38 ......................... AGGAGTGACGCGTCGTGGAAAATAGAAAACGCAAGCAA 757 25 100.0 40 ......................... TCATATATTTGCACAATCTTGAGTTCATTAATTAACTCTT 822 25 100.0 37 ......................... AATAATTGGCGAGCAGGTTTTGTGCATTGTTTAATTT 884 25 100.0 38 ......................... CCCTTGAAGGGCCTTTGTTACGTCTGGAAGCTGTTCTA 947 25 100.0 43 ......................... TATATGGACATCTCCAATAAAGTTCTACCAGCCTTCAAAAAGT 1015 25 100.0 37 ......................... AGAGTTACCTGCCTTGCCTCCACCAGGTACGGACCCG 1077 25 100.0 39 ......................... TAGCCGAATACGAGGAGGCCAACGATTCCAACGGCAAGA 1141 25 100.0 36 ......................... TTGTCACGTTTTTGACATTAAAGACTGTCACGTCTT 1202 25 100.0 41 ......................... TTTCTAGTTCTTTCCATCACATGATCATCTATTACGAATGA 1268 25 100.0 40 ......................... AGATACTGTGTCTCATCAGTAGTAGGATAATTGTACACAT 1333 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 21 25 100.0 40 GTTGAACCCATAACGGGATTGAAAG # Left flank : AAACGTATCATCAAGGTGAAGATGTACAATGTATCACTCG # Right flank : GATTATACACATTTCTAGTTAATTTTATCTAATAAAATTTAATTAATATAAAATTATCATAATAAATCATAAAAGATTAGTATCTTAGAAGCTCTCGATGAAACGGTATTACCAATTTATAACCCCCTTCATCAAGATATAATTATGGAAGGAGGCACTATAGCCTTCGTAAAAGATTGGGGAGCTTTCTTACACGTTAAAGACAACATGATAGTTTGCTCCTTAAAAGGGAAGGATATGTGGAGCGTCTCTCCAGTTGAGCTATCTTCCATCGTTTTTCTCGTCACTGGTTCGGTTTCTTCTGAGGTAATTGCGCTAGCTAACGAGTACGGGATAGACCTAGTCTTCTTCAGGAAAGGCGAACCTGTAGCTAAGGTGATACCCGCAAGATACGGCGGTTCCATGAAGGTTTGGCTATCTCAACTTAAGGCGTGGAAGAGCTCTCGGGTAAAGTATGCCTCCGTCTTTGTTAGGGGGAAGCTGAGAAATCAGAGGGTAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCATAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 4831-1462 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000069.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4830 30 100.0 35 .............................. AAAGAAACGTCATGATGTTGTGGATAAATATAATA 4765 30 100.0 37 .............................. TTGAGGTTAAGCGAGGAAGAAAAGGGCATGTTAACCC 4698 30 100.0 38 .............................. CCATATTCGACATTAGGGTATTCGTCTTTGGATTGCGG 4630 30 100.0 35 .............................. AATATTTCGGTTCCGAAATATCAGGAGAAAATAAA 4565 30 100.0 38 .............................. TGAGAGCTAACGCAGGCAAAGGCGTAACAAAGAATCCG 4497 30 100.0 38 .............................. TGGAAAGAAGAAGAGGAAGGAGAAAGAGGCAGAAAGGT 4429 30 100.0 37 .............................. ACGATGACGAAAAGGTTTACCTTGAATGTATAGCAGG 4362 30 100.0 38 .............................. AACTACTAGCACTGTTCATGTATAATTGCCCATTCAAT 4294 30 100.0 38 .............................. CCCCTCCAAGGGTTTCTACAATTGGACGCGGTAGTTCT 4226 30 100.0 38 .............................. CCTCAAGTATAGCGTAAGCTACGCCAAACGACAGAGAG 4158 30 100.0 38 .............................. TCTAACTAACTACGCTCGTCTCATGTCTCTACTCTCAT 4090 30 100.0 36 .............................. TTCATGGTCATCCCTGCCAGTATTTCATTTCCTTCT 4024 30 100.0 37 .............................. TGGTGCACCCCCACTGGGGGAGACCCCCAGACCCCCT 3957 30 100.0 39 .............................. TGTATATGGCTCCAGATAATTTGTACACAACAGCGTGGT 3888 30 100.0 38 .............................. CTGCCAGCAACAAAAGGATGAAGAAAGCTGCAGCTCCG 3820 30 100.0 35 .............................. TCTTCTCGTAAATCTTCTCGACGTCTCCACGCTCT 3755 30 100.0 39 .............................. AGAGCTCAATGATATGTATGAGAACATGTCATGGTTCCT 3686 30 100.0 39 .............................. CTGATGAATTCTAAGGGACAAATAGAGCCTCTCGTGAAT 3617 30 100.0 36 .............................. AGTTGACTTATGTGGGACATGAAACGCACCCCGATT 3551 30 100.0 36 .............................. TACAAACTGCAGTTTCTACAATTCAAGGATTTGTTT 3485 30 100.0 39 .............................. TTCCGATGGAGTCCCGTAAAGCGAAGGTCCATTCAGGTT 3416 30 100.0 37 .............................. CAAAAGTGCACCACATGATGACAATGTAGCAGGTATA 3349 30 100.0 35 .............................. TAGTATGACTAATTTCGCCACTAGTGGTATCGATG 3284 30 100.0 37 .............................. GCTAGCCTCCCTTCGGTCATCAGGAGGCTAAGCTCTT 3217 30 100.0 37 .............................. TCAAACCAACGATGGTATACACAAGAGACCTCTCTAG 3150 30 100.0 38 .............................. AACCTGGTATCGATGAAGTAGACTTCTGCACTGTCCTG 3082 30 100.0 37 .............................. TTTCACGCCCCTCACGGGTTTCCACACTTACGTAGTA 3015 30 100.0 38 .............................. GGGTGGCGTTGCGGAGCACCTCCAGGAACTCCTGGAGT 2947 30 100.0 34 .............................. TCCATTCATCTTCAATTTTATTTGCAACAAACGT 2883 30 100.0 36 .............................. GGATAGGTAAATGGCTTTCACTAGTTGATAAAAGTG 2817 30 100.0 36 .............................. TCGATATTGTATGAAGGTAAAGGGAATTCTACTTCT 2751 30 100.0 36 .............................. ACAGTAATAACAATAATATGGATGATATATGAATTG 2685 30 100.0 37 .............................. GCCAGGAAAACGGTATACTATTAGACATTCCTTGCTG 2618 30 100.0 35 .............................. ACCTTTTACTTCCGCCATTTTTGCACCTGATTATA 2553 30 100.0 36 .............................. ATGGTAAATAAAGGAAATAAGGTACAGGTATTATTT 2487 30 100.0 37 .............................. GAGTAACTGATCGGGCGGGGTAGCTAACCTCTCCATT 2420 30 100.0 36 .............................. CAAAGTGCACCACATGATGATAACGTAGCAGGTATA 2354 30 100.0 38 .............................. ACATTCAGAGCCATCACGGGAATAGAAAGAGCTGACAT 2286 30 100.0 35 .............................. CTTGGTCAGCATTTTGAAGAGCTACATCATACTCT 2221 30 100.0 37 .............................. TAAAATACTGAAAGAATATAGTATAATGCAAAGTAGT 2154 30 100.0 38 .............................. AGAGGAACACTAATGGGGATTTCAAACCTTCAGCCGAA 2086 30 100.0 37 .............................. CAATTCAAACCTTTCGGTCAATAGAGTGGCGATAAGA 2019 30 100.0 36 .............................. CGTAGATAGCGTCTTCATCTTGAGATATACTTTCTC 1953 30 100.0 34 .............................. TCAGTTTTCTTTTGGAAATTCTGTCCACATTAGA 1889 30 100.0 37 .............................. TTACTAATACGCTTGATCTGATGCAGAAAATTTTCGA 1822 30 100.0 35 .............................. TGTCATAGGCACAATCCTGGCAAATAATGGCAAAC 1757 30 100.0 36 .............................. TATCTTTGTGAATATCAAAGATTCCAGTCTATATAC 1691 30 100.0 35 .............................. CTATGATCACGGGGAGGACATCGTCCCCGAACTCT 1626 30 100.0 39 .............................. ATATCTCAATTTCTACTTCTCTTTTCATATTTTCCCCTA 1557 30 100.0 36 .............................. CAGGTATAACGTCGCCATACGTTTCCTGGAAAGCCG 1491 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 51 30 100.0 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : GAAACAAATTCAATTTTTCAACTGTCATTACCAATTAACT # Right flank : CTTAAGAGAATTTCATGATTTAAATCCTGGTTAAATGTGTAAAGTACTAAAAGACTTAAATCAAAAATTTCCTAGAAACACTGATCCGTTCTAGATGATTTGTTTATAAACTTCAATAATAAAAAGATATTATGAGTACTATAGTTAGTGAAAGCACTATAAGAGATGCGTGGTATTCCGATATAGTGGAATATCTACTTGACGAGAATATTGATAATGTTACGATACCAGAATTAGTTTTACAAAATAATCAAAGACCTGATTTAGTTACTTATATTTGTGAGAACGGATATTGCAGTCCTTTCTTACTAATAGAATTTAAGAAAAACCGTCTGGACGTCGATCTAAAGCATATACTCAGTCTTTGAGGTATTCTAATGTTATAAAACCACAATATACTGTAATTGTTTATTATAGTAATATTTATTATAGCCTTAATATAATAGACGAACTGACTAAACAAGACGAATTTAAGATGTTTTTCTCTAATGATGAGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 37-401 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000073.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 37 .............................. AAACCGTCTTCAGTTTGCCTAATTACCGTTTTCTTCT 104 30 100.0 37 .............................. TAAGGAAATAGCAGACGATTTAGCCAAAGCCTACAAA 171 30 100.0 37 .............................. AAGTATCATATCTTCCCCCTCCATCATTACCAATCAC 238 30 100.0 38 .............................. CGACGAGTGGGAAAGGGGCGTCATTTGCGACGACCTGA 306 30 100.0 36 .............................. AACTCAGTCCCGTTGTCTATTTGTCCATATGTAAAT 372 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : GATGAAGTCATAGATGTAAATGAAGAAGAGCCAATTG # Right flank : CACTGCACGGGGGTAAAGGGGGTAGAAGTCCCCTCCCGTAAGGGCGGGGTAGTTTACAAGAGAATGCTAAGATCAGGATGAGTCGGAACAACACCCTCTTTTTATCTATTTCATTCTACAAACGTTCTCTGTTTCCCATCAGCTAGGTTTTCATCATCTCAACTAACTTTATCTTCTAGTTTTGTCGAATTTCACTTGTTTGTTGAGAATATATTTTGTTTATTTGTAATAGTTATGAAACTTCTCATCTCTTCAATTCTTATCACTATCTGTTTCTTCTGACTTTCCCGCTTCAGTAGACCAAATTGCTTTAGAAGAATAGTTTTGTTGGACATGCTATTCTATCTTAATGAGATTAAGGGAAGTGAAGGTTTGCTATTTAACGGTAGACCAGAAATCATCTTCATAAAGGTGAACTTACCTGCCATTATGACGGGACATCTCCACTGTGTATGGAGATTTCCTGCTTTCAAAACTGCCTTAATAATCCTTCACATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1-4771 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBY01000070.1 Sulfuracidifex metallicus DSM 6482 = JCM 9184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1 29 96.7 36 -............................. ACCCCCTATCATGTCCGCTCGTTCAATATAATAAAC 66 30 100.0 38 .............................. ATAGCGTGGTTGTTAGATTCACACCCGCCAGATTATGT 134 30 100.0 36 .............................. TTTGGTCTCTTCTTTCATCTTCTTTTCCCTAATACG 200 30 100.0 38 .............................. GCCATCAAAGAGGCGTAATATACAGAAAGTGGAGAAAG 268 30 100.0 39 .............................. GTGGAAAAGAAGAGTACCAGAACTGGCTAAAAAGCCAGA 337 30 100.0 37 .............................. TCGGTGAAGAACATTACGTCCTTCACCTTCAACCCCG 404 30 100.0 38 .............................. TGTAACTTTCTCTCTAAGTTTTGATATTTTCCGCAATT 472 30 100.0 37 .............................. TAGTAAGTTAGTTCTTTGTATGTCTTGCTCCTCTCCA 539 30 100.0 37 .............................. CCACTGGGATACTTCGTCCTTTTTCTCTATTTGAACG 606 30 96.7 37 T............................. ATAGCTCCGCGGTGGCTCTGTGTCCCACCGCGGATAC 673 30 100.0 37 .............................. CTATTTCGATAATGTCAGTATGATGTTTACCCTTCGC 740 30 100.0 37 .............................. TTTTCCCTGACTGATTCCTCCTCCCCGCCACCACCCC 807 30 100.0 36 .............................. AATATCTGTTTGTCACTAGTATAGAATGGTGAAACA 873 30 100.0 37 .............................. AAAATAGACGTTATGGTGGCTTGAAGACTGGAGCCAA 940 30 100.0 37 .............................. GCTAAACTTGAGGCTGAGAACCCCTTCGTCATATCTG 1007 30 100.0 35 .............................. GGAAAATAAGGAAAATTAGGAGAAACAAGGAAAGA 1072 30 100.0 38 .............................. TTCGTCTAACGCCTCTTCATAGAATCACGATAGGGGAA 1140 30 100.0 36 .............................. AGTTGCCCCACATCTTCCTCGGTTTCACCTTCACCC 1206 30 100.0 38 .............................. ACGAAGCACTAGACCGTGCTAGGAATAAGGTATCTCGT 1274 30 100.0 38 .............................. CAGGTAGTAACTCAACAAGAAAATCCTGGAAATCTCTT 1342 30 100.0 36 .............................. TGTCCCGTTCGACAAAGAGATGAGACAGAAGATCAG 1408 30 100.0 37 .............................. AGGTAGGTCTTCTCCTTATCTTCTCCAGCCCAAGCTC 1475 30 100.0 38 .............................. AAATATTTCAAAAAATCTTTCAGTTGATCGAGGCCCAT 1543 30 100.0 37 .............................. TAGCTTCCTGACGACTTTCCCACCCTTCAGACTTCCA 1610 30 100.0 36 .............................. GACGCAATTTCCGCACTTTTCTCTATAGCCTCAATG 1676 30 100.0 38 .............................. CGTATGGAGAAGGGAAACAACGGCAGTAGAGGTAGTGG 1744 30 100.0 36 .............................. GTTGGTAAAAACCCAATAACCTGGTGGGCTTCATCG 1810 30 100.0 38 .............................. AAACAAAAAGTTAGCGCTATTGAAACGAAGCTTTTATA 1878 30 100.0 36 .............................. CCTACAACGGATATATGAATTTCTAGCGAAGGATAA 1944 30 100.0 37 .............................. TAAATCTTTCTCTGTGTCTCTACCCTGGTATCACTAT 2011 30 100.0 39 .............................. TCATGTTCCGTATCGATGTAACAACTCCCATTACGGAGA 2080 30 100.0 37 .............................. CAATTTGTTTCAGTTGTTCCTCGTTTATCTCTATCTC 2147 30 100.0 38 .............................. AAGCTTTCTCTGTGTATTTGCCTTAGCATTACCGTTAA 2215 30 100.0 36 .............................. ACTCTGGCAATAATCCGATAAGAAACTCCTGAAAAT 2281 30 100.0 35 .............................. ATTGGCTCTCTCCCCCCTCTCCCCCTCTCCCCCCA 2346 30 100.0 36 .............................. CGATACGATCGAATCGTAAGCTCTCTCATCGCAAAT 2412 30 100.0 37 .............................. AGGAGGGGATAATAGAGACCGATGTCCCATATGATTT 2479 30 100.0 37 .............................. ACGCCCCAACGGGGACGGGGAAACAATGATGGCACTT 2546 30 100.0 38 .............................. GCTTTTTAGCTCCGTCGCATCTAACGGGATACACATCC 2614 30 100.0 37 .............................. TCTTTGGTAATATTCTTGCATATGACCTTAATTCTAA 2681 30 100.0 36 .............................. TATATGAATATCACCACTCCCCCCCTCTCACCGCTG 2747 30 100.0 36 .............................. TTTATAAAGGCAAATGAGACAATGCATAGGCTATTT 2813 30 100.0 37 .............................. CACCACTACTGAAGAGTTCATAAAGAAAAACCTAGAC 2880 30 100.0 34 .............................. TCAAATGTAGAAATTTAAGAGTTCTAAACGCTTG 2944 30 100.0 38 .............................. TCTCCGTTGCCGTCATCAGAGAGAAGAAAGACGTCGAC 3012 30 100.0 36 .............................. ATAAGGACATGAAAGAACGTGAACTACCCCGTCCGT 3078 30 100.0 37 .............................. ACTCCCTAAGATAAAAGAGATAGCTTTCTTGTATCCA 3145 30 96.7 35 .........A.................... CGGTGATACCAACGCAAAATCGAGGAGAAAGTTTT 3210 30 90.0 36 AG.......A.................... CCAGTATCAAGTTCTTATTATATCCGGTTTTCTCCA 3276 30 96.7 36 .........A.................... TAGAAGATCCTCCGTTGAAACTACCGATTGGGTTCG 3342 30 96.7 35 .........A.................... CTAGGATCCCTACTCTCTTCCTTTTGTGCTGAAAA 3407 30 100.0 35 .............................. TGTATTTTCTTTTTCTCATCTAGTTTTCCTTTCAT 3472 30 96.7 38 .........A.................... GTATATAAAGAGAAATACTACGTTACACTTAAAATCTG 3540 30 96.7 37 .........A.................... AAGCCACCACGAAAGTGGTGGCTACAGCCAAAATTTC 3607 30 96.7 40 .........A.................... TATTCAAAGTCCTTACGGTAATCCCCAGGCTCTCTGAGAT 3677 30 96.7 37 .........A.................... GGTGAGACAGAATGAGTGATCTAGAATATATCAAACA 3744 30 100.0 36 .............................. TTTAATACTTTGGCATAAGGCTTTGTTCTAATACTA 3810 30 100.0 37 .............................. GAAAAGGAAAAGAACCAGAAACCTCTCCTTCTCGAAA 3877 30 100.0 36 .............................. AATTTCATGTTTTCATTCTTGCCTCACCTTAGACAA 3943 30 100.0 37 .............................. GAACATGTACCCACATACTCATTTTTGAAATACCCAT 4010 30 100.0 37 .............................. AAACCAATTCAATTCTAATATCTGCGTGTTTAGGCAT 4077 30 100.0 35 .............................. CTGCTTATGTTCGTATGGGCGATGTACCTAGCTGA 4142 30 96.7 36 .........C.................... AAATTTTCAGGCAAAGAAAGGAGATAATTTAAAGCT 4208 30 100.0 37 .............................. ACCCACTTTTCAGGATAAAAACTGCGAGTTTCAACTT 4275 30 100.0 35 .............................. TGAATATGCAGTTCAGAGAATTGTTAGACAGTTCT 4340 30 100.0 37 .............................. ACGCTCAAGCTTGTTCCGCAGAGAGTGTTCACTAAAT 4407 30 100.0 37 .............................. TTTAAAATGGTGTCGTCAATAATATCAACATCGCGAA 4474 30 100.0 35 .............................. TTTCATCGTCCCTTTCTTCGTGAACGCCCTACCAC 4539 30 100.0 37 .............................. GGAAATTCTTCCCATTTCATATGTTGACAGTCCTTTA 4606 30 100.0 37 .............................. TATGATCTAAAAGAAAAGAAAATGGTTGTATCGATAA 4673 30 100.0 39 .............................. CAAATCATTTTTTCATCGTCATACACAATAATCTGCCCA 4742 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 72 30 99.4 37 GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Left flank : | # Right flank : AT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGAGATCCTTAGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //