Array 1 1415195-1415618 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYG01000001.1 Sebaldella termitidis strain NCTC11300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1415195 30 100.0 36 .............................. TTCTCTAGCTTTTGCAAATATTTTTTTCATTGTTGC 1415261 30 100.0 36 .............................. TCTTGTCATGGGAGCGTTTCAACTTGATTTTTACAG 1415327 30 100.0 34 .............................. TTTTCTAATTCTTCCGCAACTATTATAGTTTTAT 1415391 30 100.0 36 .............................. ATAGTTCCTTGCAGTATTGCAAATACAAGCAAGATT 1415457 30 100.0 36 .............................. TATAAAACAAAAGTAAAGCAATTAGCTGATCTGTTT 1415523 30 100.0 37 .............................. ATGTACTCTTCCCAGATTAGGCCAAAAGTTTTTTTAT 1415590 29 83.3 0 ........G........T.....-....TA | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 CTATTAATATAACTATCCTAGAATGTAAAT # Left flank : AGGGCCTTTTATTATGCGGATAGAGTGCTTACAATAATATAAATAAACATATTTTTAAAAACTTGCACTTTTTCGGAAATATGATATAATAATATTGAAAACGAGTATAAAGATTTAAAATTTTGTGACAATTAAGCTAGACGTGAGTCTGGCTTTTTTGTTATAATAATTTGTGGTTTCACAAAAACCATAAATCTTTATACTCGGAGGACATCTATGCGTACATTAGCAATAGTTACTATATTATTTATAGTAATTACTAAAGTACTGTATTAACAGTTCCTCAGCCCCTTTGGGGCTTTTTTTAATTCTATAATTTCTGTCGACCTCCATTAAGGTAAAAACTATAGGAGATCGACAACTTTAAGTAGAACAATGCTTTGATAGCATTTTCTCATAAAATGAGACATGATTATGTCAAGGTTTCAGTAAACGAAAAAAATAGGTCGACAGAATAGTGTATTTGAGGTATAATAAATAAAAGGTTTTTAAATAGAGGA # Right flank : ACATAATAAAAAAGCCCTCCAAAGAGGGCCTTTTATTATGGGGATAGAGTGCTTACAATATTCTTCAAAATATCAATAATCTTTATATAATACCTGAAAATTTTAGTTATATTTCTATATAAATTAGATTTTTATTTTCTTATTTCATCTAATAAATTTTTAGCTCCTTCAACTCCATTATCATAAGCCATTTTTGCATATTTTTCAGCAAGTTTATATTTTCCTTGCTCATAGTATAAAACACTTAAATTAATCATGGCATCATAATTATTATTTTCAATAGCCATAAGATAGTATTTTTCAGCAAGTTTGAATTTTTCTTGATCATGATATAAAAGTCCTAAATTATATAAGGCTAATTTATTATCGTATTTAATGGCCATGAGAAAGAGCCTTTCTGCAAGTTCAAATTTCTCTTGTTTTTTATATAGATTTCCTAAATTGTTCATAGCATTAGAGTCACTATGTTCGCTAGCCATAAGATAGTATTTTTCAGCAAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTAATATAACTATCCTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1628275-1628439 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYG01000001.1 Sebaldella termitidis strain NCTC11300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1628275 31 100.0 35 ............................... TAAAGGGAAGAAGACTAAATAAAATAGTTAATAGT 1628341 31 100.0 36 ............................... CTGAAATATGATCTGAAGCAGTGCTTGTTCCAGTTA 1628408 31 87.1 0 .......................CAC...G. | C [1628436] ========== ====== ====== ====== =============================== ==================================== ================== 3 31 95.7 36 CTATTAATATAACTATCTTAGAATGTAAATT # Left flank : GCTTCAAAAAATGCACCCCTGATTTTGAAAAAAACCGGATTATATGAATATTTTGATAATATAGCGGAGCCGGGATCTGTACGAGCAAAGCCGTTTCCGGACATTTTTCTGAAAGGTGCTGAACTGTTGGGACTAGAAGTGTCAGAGTGTGTGGGAATAGAAGATTCCTATGCCGGAATTCAGGCTATTAATGATGCGGATATTTTTTCAATAGGGATTGGAGATTTTGAAATTTTATCGGATGCAGATTTGAATCTAAAATCTACGGATTTTCTAACTTTGGAATTAATAAATAATATTGTTTAAAACAATAGATAATCTGTCGATCTCTGGTAAGGATCAAAATGCCGGAGATCGACAATTTTATATTTTATAGGTATTAGAGTTCAGAATTTGATGAACTATGACATGATTATGTCATAATTTCGGCAGACGAAAAAAAGTGATCGACAGAAATGTTTATTTGAGGTATAATAAATAGAGGTTTTTTTCATACAAGA # Right flank : TCTATCAAAAGATTCCATATAGTCACAATATTGGTTAATTACACATAAGATTTGGTTTATATGTTTAATCCTTTTATTTTTTACTTCCTTATTTTCTATATATCTGTTATAATGATTTATAATTGTATAAACAAATTAATTTGGAAAGTGAGGGTAATTATAATGAAAGAAAAGTATAAAAATCTATTTATTCCAATAACTTTAAAGAATGGTGCAGAAGTGCGGAACAGAATAGTAATGGCACCAATGACAACATTTTCCGGAAATTCTGACGGAACGGTTTCCGAACAGGAGCTTAAATATTATAAAAGAAGAGCAAAAGGATTAGGAATGCTCATTACTGCATGTATAGGAGTTTCTCTTGACGGAATAGCATTTCCCGGACAGTTTACAGCATTTGCAGAAAATGCAGATGAGAATTTGAAAAAGCTGTCTGAAATAATCAGAAATGAAGGAACAAAAGCTATATTGCAAATACATCACGGAGGAAGAATGGCTGT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTAATATAACTATCTTAGAATGTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1737832-1737987 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYG01000001.1 Sebaldella termitidis strain NCTC11300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1737832 24 100.0 42 ........................ GTAAATGAATAGGAATAGAAAAATAAAAATCTTGTATAGCTT 1737898 24 100.0 42 ........................ GTAAATTAAATCTTTAGATAAAGTATCATAAGATATTTTTTT 1737964 24 95.8 0 .................C...... | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 98.6 42 GTATTAATATAACTATCTTAGAAT # Left flank : AGGGGAAGCGGAAGCTATCCTTGCAGTACAAAGAGCAAATGCCGAGGCTATAAGACTATTGAAAGAGGCAGCACCTACAAGCGAAATATTATCACTGAAAGGAATGGAAACATTCGAAAAAGTAGCAGATGGAAGAGCCACTAAGATAATAATACCAAGCAATTATCAGAATCTTGCCAGTATGATAACTACTTTCGCAGAGTTAAATGAAAAATCTACAGATGGAACAGAGGGAGAATAAATAAAAGAAGGTCCGCCGAAAGGCGGGCTTTTTTAGTATTTTTTAAATAAAGAATTTATGAATAATATCATAAATATTCTGTCGATCCTTGATACAGAATTAAATGCCGGAGATCGACAATGCTTTGTTTTATAGCTGTCTGAATATTATTTTGTTAAAAATAAGACATGATAATGTCATGGTTTGGACAGACGAAAAAAAGTGGTCGACAGAAATGCTTATTTAAGGTATAATAAATAAAAGGTTTTTGATATGTAAG # Right flank : TAAAATCCAGTTTTAAAAGAAAAATATAAATAAAAATGCACCATTTTCATTTTAGAGAAAACAGTGCATTTTTTATATTTAAAATACTAATATTTCAGGTTTTATGATAAGCATAAGTCCGAGAATAACCATAAGAATTCCGCCGAACAGATTCATGAGCTTTGAATATTTACCAGTAGAGGCTATCTTGTTTATACTGAATAAAGCCAGTGCAAATACTACAAAATCATCAATCATATACCCTATAATATAAATAAGATTATAAACCTGTCTGCTGAGAAAAGAAACTGTATTCATCTCGAGAATCTTGGTATAAGTCTGTGGTATACCAATAGAACAGGCAAATTCTATTACATTTACCGACAGGGCAAGAGTAATGATACCTAAACCTGTAAGTATAGTGAACGGCTTATGAGCCAGATCCTGAATTTTTCCGGAAATTTTTGCCTTCTTCTCAAAATCGCCTACTTCACAGGCTATTTCATTACGGTTCTTAATAT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATATAACTATCTTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1816948-1817110 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYG01000001.1 Sebaldella termitidis strain NCTC11300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1816948 30 100.0 36 .............................. ATGTTATATTTTTTATCATTTTATCATCTCCTTAAT 1817014 30 100.0 37 .............................. TAATATTACCACCTTTTTTTAGTTTTTGTGTTTCATC 1817081 30 83.3 0 .................C.....CAC...C | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 94.4 37 GTATTAATATAACTATCTTAGAATGTAAAT # Left flank : CGGCATGATACCCGCAAAAGTGTAATATGCTTTCTCAACGCCGGCATTTTTAGATTCTGCTGCTAATTTTTTTACAGCAATCTCAGATTTGGCAGTACAGTCTGAAAAAGCTGTACATCCTGCCAAAATAAGTAAAAATAATATCTTTCTCATTATAAAACTCCTTTTTTTATTTATTATAGCCCTAAATCAGGTTATTTTATATAACTCGGCTTATAATTCCGAAATATTAAAAATAGAGAAAACCGTAAATTTCTGACAGGTTACAGATGGGAATATGAGATGATAAAAAAACTGTATAAATATTGTACCAAAAATTTCTGTCGATCTTATATACGGAATATAATGACCTAGATCGACAAATGTAAAAATCATAGTATGTTCGATGAGTTTTTATTATAATGTAGACATAAAAATGTCAAGTTTTTGAAGACGAAAAAAAGAGGTCGACAGAAATGTTTATTTGAGGTATAATAAATAAAAGGTTTTTGAGGGGATAG # Right flank : CATTTTGATTAATTACCCTAAAATCCAAAAATCAAATAAAACTATTTTTCCTCTAAAATGGGGAATTTTTTTATATAATATTTAGAAATAAATAAAAAGAATAAATAAGGATAGTGAAATTTTTAAAATAAAATGATATAATAAATAGAAAAAAAGAGGAATATAATGAAAAAAACAGGAGAAGAAGTTCTGGGCAGCATAAATAAACTAAAGATAATACAGAGAAACGATCATCAGAATTATACTCTGGATTCAAGGCTTTTATCAGATTTCTGCAGGATAAACAGACATGTAAAAAAGATACTTGATATTGGTACAGGAAATGCAATACTGCCTTTGCTGCTGTCGCAAAAGTCGAAAGCAGAGATCACAGGAATAGAAATATTAAAAATATCAGCAGAGCTTGCTGTAAAAAATATTGAACTAAATAATCTATCTGACAGAATAAAAATAATAGAAGGCGATATAAGAAAGTGGGCTGATTATTTCAGACCGGCAGA # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATATAACTATCTTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 2839751-2839934 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGYG01000001.1 Sebaldella termitidis strain NCTC11300, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ============================================= ================== 2839751 22 100.0 44 ...................... AAAACTCAATCAAAATAGGGTGTCAAAAGTACACTCATTTACAT 2839817 22 100.0 45 ...................... CTGTTAAATCCATGTTATAATATATTATCTTTTTGAAATTTACAT 2839884 22 100.0 7 ...................... TCCAGCC Deletion [2839913] 2839913 22 68.2 0 .......ACC..T....T..TA | ========== ====== ====== ====== ====================== ============================================= ================== 4 22 92.0 32 TCTAAGATAGTTATATTAATAG # Left flank : TTATTAACAGTACTACTCCTTTATTTCTTGTTTTCTTTCCTGACAGTAATACTATCATTAAGATTATCCATATAATACCGTTATCTCCCAATGAAGTAAAAAATACCATTATCTTGTCCAGCAATGGATTTTGAATTAATTTTACAGCATTTACTGCTGTTTGATCCATAATATTTAACATCCTTTTACTCCTGCCTGTTTATTATACTATCATTATATAATCCAATAAATAGACCTGACTGTGATATAACTGAAAGTTTTATGAAAATTGCAGGTAGAGCGGATATTTTATTTTATTTTTATATTTGAACATATGTATAAAAAAAGCCTTCCATAAATTTTCAGGAAAGCTGTTTTAAAATCTGAAGTGATTTTATTTTGTTAGAATTTTTTTAAATAGTTATTTTTTCAATATTTAAGTTATGTTTTCAAATATATTTTTGATAAATTCACATTGCTATTTATGCTTTTAGTATGAAATAACAACTATTATTTTTTGC # Right flank : ATACCTTGATTATCAGTTTTTGTCGATCTCTTTTTTTCGTCTATTCCAATCTTGACAAAAGTATGTCATATTTAGGGTGAAATATCAATCAAAATACTGATTATTTTAATGTTGTCGATCTATAGTACTTTTACCCCTATCAGGGGTCGACAGAAAATATCTTTTTAAATATATCTCATAAATCATAAATCAAATAATTTTTTATCATACAAATAAAAAAATAACCAAGAGTAAAATAATAGCCTTAGTTTTAATAAATTTATCTCCGTAATTGTTTTATAAAATCGTTATATTCATTTAATGCTTCTATTATTTCAGATTCATAAAAACCTTTTCTCAAATAAATAAATAATATCTCGACATCTGACTTATACAGGCTCTTATAAATGTCAATTTCCGGAAAGTAGATGTTCTGCCTGTATTGTGCATACATTCTCCTTAAAGCCAGAGGATTCCCTTCTTTCAGTTTCCCCAGCAATGTTTTACTATTACTTGTGTAT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:-0.25, 7:-1.04, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAAGATAGTTATATTAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //