Array 1 1505-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQC010000038.1 Escherichia coli strain KG-57 NODE_38_length_44554_cov_29.032413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1504 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 1443 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 1382 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 1321 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 1260 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 1199 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 1138 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 1077 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 1016 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 955 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 894 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 833 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 772 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 711 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 650 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 589 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 528 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 467 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 406 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 345 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 284 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93000-91993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLQC010000016.1 Escherichia coli strain KG-57 NODE_16_length_101597_cov_25.766355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 92999 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 92938 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 92877 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 92816 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 92755 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 92694 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 92633 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 92572 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 92511 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 92450 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 92389 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 92328 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 92267 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 92204 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 92143 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 92082 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 92021 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //