Array 1 96423-99450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFQ010000013.1 Vibrio cholerae strain Vc2632 NODE_13_length_109849_cov_143.146449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96423 28 100.0 32 ............................ CTACGAGGTTGGCGAAAAGAACAAGCCTGAGC 96483 28 100.0 32 ............................ AGTCACTTCAGCAACCCACTTCTTCTTTTCTT 96543 28 100.0 32 ............................ ATGATGATAGCGGTTGTGGGTGGTGATGTTAA 96603 28 100.0 32 ............................ ACAACTGACACGCCGCAAGCGTAGGAGATAGA 96663 28 100.0 32 ............................ ACAGAGGCAAGCCGCACTTTAAGTCAAAGCTT 96723 28 100.0 32 ............................ TCGTAGTTGTTACGTAACGCCATGATGATAGC 96783 28 100.0 32 ............................ ATATCAGCAATTGCGACCATACACACGGTATC 96843 28 100.0 32 ............................ TGCTCCGCGATGGGTGATTTTTCGTCTTTTTG 96903 28 100.0 32 ............................ CGAATACCAATGCCCTTATTGTGTCCGGTACG 96963 28 100.0 32 ............................ TCTCTGGTTGATAAGCCTTGCTGTTGTGGTGA 97023 28 100.0 32 ............................ TGCCCATTCAGCCCCTTTCGAGTCTTCGGACA 97083 28 100.0 32 ............................ AGATGATGGATCCGCCACATCAGGAAGCTTTA 97143 28 100.0 32 ............................ GCGATGGCTATTGTTCTTGCCTCAGGCGGTCG 97203 28 100.0 32 ............................ ATTGCGAAGGTGATATCTGAGTATGGTTTCGC 97263 28 100.0 32 ............................ TGATTTGATGATGATTTCGCAGCGTGAAAGGG 97323 28 100.0 32 ............................ ATCTTGAACCCCTCCCACTCGTCCCCGTGGTA 97383 28 100.0 32 ............................ CAATAGCTCAGATAACTTATGGTCGGACTCAG 97443 28 100.0 32 ............................ GCTTCAACTATATCCGAAACTCAAAGCTCTCT 97503 28 100.0 32 ............................ GAGGAGCAGGACTTACTACTTTTTCATTTTCT 97563 28 100.0 32 ............................ TTCATCCTCAATGCGCAGTCGTGCAAAGATGT 97623 28 100.0 32 ............................ AGTTAAACCAAGAAAAGGCAGCGTTTACGACC 97683 28 100.0 32 ............................ AAAACCGAATGGAAGAAAGTCTACGAACGAAA 97743 28 100.0 32 ............................ AATATGCATAAATCGAGATACCAATATGCATA 97803 28 96.4 32 .................G.......... TGTTGTTCCTGTCACCTTCAAGTCTTCCATTG 97863 28 100.0 32 ............................ TTACCGTTGCTTCAAACGCGAATTTTGCGTTA 97923 28 100.0 32 ............................ TCACATGATGTTTTGAATGTGATGGTGGAAAC 97983 28 100.0 32 ............................ TACCAAGCGGAGTAACAGAGCTTAAAAATACG 98043 28 100.0 32 ............................ ACGCCGCCATCGGCATAACCTTTTAGCCCTTC 98103 28 100.0 32 ............................ TTCATCCCAATCTTTCTGACACTCAGTGCAAA 98163 28 100.0 32 ............................ TGTCGTAGTGACACCCTCAGAGCTATTTGTAT 98223 28 100.0 32 ............................ GTCAGCGCGTTTCATCGCACCCATCAACTGAA 98283 28 100.0 32 ............................ AATCGTTCGCAAGCGTATCGACCGACTCGGCT 98343 28 100.0 32 ............................ ACACGCTATTTGACGAGTTGAATTTGAAATTG 98403 28 100.0 32 ............................ AAAATCACGGCTTTCCGGTTCTGATTGGGCTG 98463 28 100.0 32 ............................ AAATTCAAAAGTCTCTTATTCACAAATGAAAC 98523 28 100.0 32 ............................ ACCATCCGACGGTTCGTTGTACCCGAGCCAGC 98583 28 100.0 32 ............................ ATCAATCGTTAACATTCCACCATAATGCCCGA 98643 28 100.0 32 ............................ GCAAACAAACCAGTTCACGCCAAGGGCTGGTC 98703 28 100.0 32 ............................ CGTTCACGTGGGACATCACAGCAAGACAAACG 98763 28 100.0 32 ............................ GTTTGGGGCGACAAATTTACACAAAAATTAAG 98823 28 100.0 32 ............................ GTAGATATACTCCGCTTCGCGGTTGTTCTCAT 98883 28 100.0 32 ............................ ACTACTAGTTCGTCTCCGATGGCGTCGATAAT 98943 28 100.0 32 ............................ CGACAGAGGGGTTTCAATGACGGCTCTGTTTT 99003 28 100.0 32 ............................ AGCCACAGTGCGCGGGCGAGGTTTTGCGGGTC 99063 28 100.0 32 ............................ TTTTTGCCAAAGGATATTAAAAAACCGTGGAT 99123 28 100.0 32 ............................ GTTCAAAAATGTTGTGTTCGTTGATTGCGAAT 99183 28 100.0 32 ............................ GTTGATAGCATTCAAAACAGCTTCGTCAAAGT 99243 28 100.0 32 ............................ TCAATTATTGATACATCAATATTTACTGAGCA 99303 28 100.0 32 ............................ GATAACTGAAAACGCGCTTTTTCGATAGGTTG 99363 28 100.0 32 ............................ GAGAAAGTGTTTGATAATCTCGGTTTGCTCAT 99423 28 85.7 0 ...........T.T...........TT. | ========== ====== ====== ====== ============================ ================================ ================== 51 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAGTGTTTAGTGGAATTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAAATTTTTGTCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTGAACCAAACGATGCAGTTCACTTTCAACATTTTAATGCGGTTCCTACTTTATATTGTGCATATTCATTATGACCTGCCTAATGGTGCTTTCGATATCAGGAGTCACCTCTTTTCGAGGTGTTGCGAGTTTTTTCAAGAGTTCTGCCTGGCGGTAGTCGGAAACATCACCATAGCTGTAAAAAGTAGTCAGTACGCCTTCATGACCTAAGTTTTGGCTCCAAGCTTTAAACTCTTCCGCGTTGCTACATAATTGCTCCCCTAAACGAGCTAGTGTGTTGCGAAAGCTATGTGGGTTGTAATAAGGCAATCCTGCTAGTTTGAAACTTTGCTTGAAGATTCTTCTGATTGGGTTTGCTGTTGTCCAATGCTCTTTTGTTAATCCCATGGCTTCAAACTGAAAGTTGGGGCTGTTCTTCACTTTCGTTTTTGGGAAAAGGGGAGCTTCTGGGCCGAATGAAAGCTCATTTGTTAGATAACTCACCCATTCGGTAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //