Array 1 10415-9190 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRYY01000760.1 Cupidesulfovibrio oxamicus strain NCIMB 9442 NODE_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10414 36 100.0 30 .................................... GCAAATAACGAGCGATACACCCGCGTTCAA 10348 36 100.0 30 .................................... GATGTACGCTCAGTGGTGGAACGGCATGTC 10282 36 100.0 31 .................................... TCGAACAGATCACGCACGTACAGTTCCTGTC 10215 36 100.0 30 .................................... CAAAGGTCTGGTCAACCGCCGCAACGCCAT 10149 36 100.0 30 .................................... ATGATGAGTGCTCGCACGCCCCCGGCTGCC 10083 36 100.0 30 .................................... GTCATCAGCAAGATGGGCCTTTCTGCGGAA 10017 36 100.0 29 .................................... ATGATGCGGGTGCGCTCTTCACGCGACCA 9952 36 100.0 30 .................................... CGGCGTGCAGGTCGGGGTTGTCGCGGGCAA 9886 36 100.0 31 .................................... TGGACGAAGCTCACTATATCAAGAACGACGA 9819 36 100.0 31 .................................... CCTGTACGTCTACAGGATCATCCACGAGGTC 9752 36 100.0 30 .................................... GGATAAGGTTGAACCCCGTTCTCGAACATC 9686 36 100.0 30 .................................... CCTGGGTGTACGGTGACGCCCGTGTGTCCG 9620 36 100.0 30 .................................... CCTCCAGGCTACCCGGCTAAACGGATCGCC 9554 36 100.0 30 .................................... CGGTACGCAAGACGGCAGCATCGTACTCGC 9488 36 100.0 30 .................................... TCGCTGTTGTCCTTCATGCGCGGCAGCTTG 9422 36 100.0 29 .................................... CAGATGTCGAAACACGGAAACGGGATATG 9357 36 100.0 30 .................................... GGCAGGCGGTTCCAGCCGTCCATGACAGTC 9291 36 100.0 30 .................................... ACAACGGCGCGCAGGTGCCCTTCGCCGTCA 9225 36 97.2 0 .............................G...... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 ACTGTAAACGGGGTCTGATTCAGGTCAAGTCACAAC # Left flank : CCTGTTCATCGCTGGCGGGCGTGGTAGGCGGCGCGCGGCGCGGGCTGTGGCTGCCCCCGGTGGAGCCGCTATGTGGCTGCGGGCTACAAGGGGACGGTTTGGACGATGACGGCGATGCCGCGTGACCTTTCGGGGTATCGCATCATGTGGTGCATAGCCCTGTTCGACTTGCCGGTGGTGACGGCAGAGGAACGCAAGCGGGCCAACAGGTTCCGCAAGATATTGCTGGGGGCCGGGTTCACCCGGTTGCAGCTTTCCGTTTATGCCCAGCCGTTTCCCGATGAACGCCGCAGCGAACGGGCCGTGCGGATCATCAAGTCTGAACTGCCGCCTGATGGCGAGGTGCGCTTGATGTTTCTGACCGACAAGCAGTTTGCCCGCATGCAGGTGTTTTTGGGAAAAAAGGCCAAACCCGTGGAAAAAGCGCCCGAACAACTCTGGCTTTTGTAGGAATTTGAACGGGATTTTCGGAATGTTGAAGGCCGCTTGCGCGGCCTTCA # Right flank : GTGATTGGCTGGTCAACGGTGTGGTCACCAACTGTAAACGAAGAAAGATTCACGGCGGCACTACAAGGTGCGGGCATCCTTAATTCCCTTCCCCCTTCCCATCCTCCAACGGCAAATCCAACTGCCAGATATCCTCGTCGTAGTCCTTGCTGACGATGAAGCCGACTGAGCGCGCCAGTTCGGCCATGGACTTGTTGTCGCCAAGGGCCGCGCCCACAATGCGCTTGGTGCCGCGCGCCTTGCAGTAGCGGATGATCTTCTGCATCAGCAGCTTGCCCAGGCCCTGCCGCTTCAGATCGGATCGAACGGCCACGGCGAATTCCGCCTCGCTGTTGTCGGTGCTGACCATGGCCCGCACCACGCCCAGCGTGCGCACCACCCCTTCGTTGTCCGGTCCCTTGGCGATGAAGGCCATTTCGCGGTCGTAGTCGATCTGGGTCAGCTTCACCATTTCGGCGCGGGGCAGCTTGGCCACGTTGCCGAAGAAGCGGAACCGCTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGTAAACGGGGTCTGATTCAGGTCAAGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 12017-5215 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRYY01000165.1 Cupidesulfovibrio oxamicus strain NCIMB 9442 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12016 29 100.0 32 ............................. CTTACACTTGCATTCCTTCGCCTTCTTGCAAG 11955 29 100.0 32 ............................. TCCGCGAAATCGCGCTTCTCGGACGTTGGGAT 11894 29 100.0 32 ............................. TTTCGTTTGGTGCATGTGGGTGGTGTGTGTAG 11833 29 100.0 32 ............................. TCACAAGGCACAGGAGTATCAAGCAGGCTGCG 11772 29 100.0 32 ............................. TGGACGTGGAGTACTTCCAGAAGGCGCTGGAC 11711 29 100.0 32 ............................. ACCACGCGCTTCGTCGAAGGCCTGCGCGCAGC 11650 29 100.0 32 ............................. CTCTCCCCACAGCGCCCGCGTGATGGGCCACG 11589 29 100.0 32 ............................. GCGTTCTGCATCCGCACCCTCAAAGCCGGGTG 11528 29 100.0 32 ............................. CAAGGCGGCGCGTCTGGTCGTCGGGAAGACGG 11467 29 100.0 32 ............................. TGAGCCGGGCAACGGTTGTTAGCTGCTCCAAC 11406 29 100.0 32 ............................. TACCGCGAAGGCAGCGTCGATTTCGTCAGCGC 11345 29 100.0 32 ............................. GTTCAGGATGGAGTCAAGAGCCGTGGCGAAGC 11284 29 100.0 32 ............................. CGCGCTCGCTGGAAAGCGGCGGCATAGGGGAG 11223 29 100.0 32 ............................. TGTTCCGCATGCGATGGGAGGATGTTGACCTT 11162 29 100.0 32 ............................. CTCGGTGGGCCGTATCACCGCGACCACGTGTA 11101 29 100.0 32 ............................. TGCGCATCCCCATCCCGGCAGTCTACGGGCGC 11040 29 100.0 32 ............................. TCTTGAAGCAAGCCTTGGAAGAAGTTGCGGCG 10979 29 100.0 32 ............................. CCAGCCACCCAGTCGTTTTGCGGGCGGTACGC 10918 29 100.0 32 ............................. CATGGGGCAGCCTCATCCAGTACTGCGCGCAC 10857 29 100.0 32 ............................. CCATGGTGTCCTCCTTGTGCTGTCCTACTCCG 10796 29 100.0 32 ............................. CGGCTGGCCAGCGCGCCGGGTGCGGCATCGCG 10735 29 100.0 32 ............................. TTTTCAATGGCCGCGCCCACATCTCCGAAAGC 10674 29 100.0 32 ............................. TTAAGCGACCACTCCCCCCGCGTCGCCTTCCC 10613 29 100.0 32 ............................. CGAAATCGCCGCCGCCGCAGCCCAGCGGCAAG 10552 29 100.0 32 ............................. CAGCATGCCTACTCCTTGAAGCTCACGACCTG 10491 29 100.0 32 ............................. TGATCACCCTCCGCGTCTGCGTCTTCCGGCCT 10430 29 96.6 32 ............................T TACGTGGACGACCGCGAGTCTGCACACGCCGA 10369 29 100.0 32 ............................. GAAGATCAGCACACTGACCGGCGCGGGGCATA 10308 29 100.0 32 ............................. GCTTGGGGAGGAGACACTGATGAGTACTGGAG 10247 29 100.0 32 ............................. TGTCTATCACAAAATTGCGCAGACGGCTTTAA 10186 29 100.0 32 ............................. CACGGCGAGGTGAGCACCTGTCCTGCGGTCAT 10125 29 100.0 32 ............................. CGGCGCGTGGTGACGCGGGAGCAGGTGGAGGA 10064 29 100.0 32 ............................. ATCTGGTGGGCGGCGTCTGGAGTCGTCACAGT 10003 29 100.0 32 ............................. TGGCAGGATGGTGGAGACAGGACGCCAATGTG 9942 29 96.6 32 ............................G TTGTCGGCCATCTTGGCATACGCCGTTTCTGT 9881 29 100.0 32 ............................. CAGCAAGTCGGGACACCCGCTGCCGACAGGGG 9820 29 100.0 32 ............................. CCGTAGTGCAGTTGCAGCCCCTGGAGCGCGTC 9759 29 100.0 32 ............................. TTGATGCCCTGCCCGATGCGAAGGTTGTCGAA 9698 29 100.0 32 ............................. TGCCCAGCAGCATTGATGGCGAGTGCGAAGCC 9637 29 100.0 32 ............................. CTGTTTGCTTCGTAGTTCATCTCTACCCTTCC 9576 29 100.0 32 ............................. GCAATGTAACGTTTCATGTAACAGCGGAAACG 9515 29 100.0 32 ............................. CGAGCTACCCCCCGTCTACTCGACAACGAGCG 9454 29 100.0 32 ............................. TGCCCGTGTTCGGCTCTCGCCGCGCGGGCAGC 9393 29 100.0 32 ............................. CCAGCGGATGCCACGCGACTGTCGCGGCTTCG 9332 29 100.0 32 ............................. ATTTTCCCTGCTGGAGGGGCTGTCCAAAGCAT 9271 29 100.0 32 ............................. ATTGAGGCCATCCAAAAGCAACTAGGGGGCGG 9210 29 96.6 32 ............................G CACGACGGATTTGTCCCACGACGCTTGGGTTC 9149 29 100.0 32 ............................. TGTTGCGCGGCGCGGATTTCGCCTAGCCTCGC 9088 29 100.0 32 ............................. GAAAATGCAGAACGCGCCCAAGTCCGAAATTC 9027 29 100.0 32 ............................. AAGCCGGGCCTGCTGCGGGGTAAGTTCCGCGC 8966 29 100.0 32 ............................. TACGAGTCGGCGTGGCGCGAGCCATTCTGCAA 8905 29 100.0 32 ............................. CCGTCCGGCTTCGACGCGGGTGACGTGTTCGG 8844 29 100.0 32 ............................. CCGGGCCGAGGCGCAAGCGATTCTGGACGCGG 8783 29 100.0 32 ............................. TTCGGCAGCGGTTTTCCCGGCAGCGCCTCGAA 8722 29 100.0 32 ............................. CTCGTGCTGACCGGCAAGAGTCACCAGCAGCA 8661 29 96.6 32 ............................A TGGCCTCGCCGTTCTTCGTGGTGCCGCCCTTG 8600 29 100.0 32 ............................. TACATCCGGGACTGACCACCGCGCTGTGTGAA 8539 29 96.6 32 ............................G TTGCCAGAACACTTCCAGCAGGAACTCGCCAG 8478 29 100.0 32 ............................. CTTCACCTATCCGAAGCTGATCGCGGGCGACT 8417 29 100.0 32 ............................. TGGCAATTCCGCCCGCAGAAGCCAGCCAGACG 8356 29 100.0 32 ............................. TTCGACGGGCTTGGGGCAAAAAGCATCAAGCG 8295 29 100.0 32 ............................. TCCCATCGCCAGAGAAGCCGGGCATAGCCGAA 8234 29 100.0 32 ............................. AGCCCGGCCCATGTTCGTCGCTTCCTCGGCGT 8173 29 100.0 32 ............................. ATGCGGCACTCGCCGGGCTGGAGGCCGGGGAA 8112 29 100.0 32 ............................. TTGCACCGGCCACGGATGCAGGAGTCCCCATT 8051 29 100.0 32 ............................. TTGCGCTCAAAGGTGAACGACTTGAGCGCGGT 7990 29 100.0 32 ............................. TGGACTGTGCCGGTTACGGAATGCGCGCCTGG 7929 29 100.0 32 ............................. AGCCACGCTCACGTCCCACTCCGGATTCCAGC 7868 29 100.0 32 ............................. GAAAACGGCGCTGCGATACTGGCACTGTGCGG 7807 29 100.0 32 ............................. CGGCACACTGGCGACACACTTGAAGCGGTGAA 7746 29 100.0 32 ............................. CCGCTTACTACGCCACGCGCCTTGACGCACTG 7685 29 100.0 32 ............................. TTGGAGCCTTCAAGGCCCGCCCTGTTGGCTGT 7624 29 100.0 32 ............................. TTAAGATGAAGCTGTCCCAGCCGTAGACCCCA 7563 29 100.0 32 ............................. TCAACGACGGTCCACGCGTAGTCAGGCGGTGG 7502 29 100.0 32 ............................. CCTTTCAGCAAATCGGTGATGACGTCGCCTGT 7441 29 100.0 32 ............................. CTCGCCACATACACGTGCGAGGCGTGCGGCGC 7380 29 100.0 32 ............................. CGGTCAGACTTGGCGTGCGCGAGTGGGTTTGC 7319 29 100.0 32 ............................. CTCGTCTAGCTCACGGTAAAGCGCGGTGCTGA 7258 29 100.0 33 ............................. TGGGGGCTTGAGCCGGTGCTGAAGCCTGACGGC 7196 29 100.0 32 ............................. TGGACCTTGCGCGCGCACGGGTCGCCAAGCAT 7135 29 100.0 32 ............................. TGAAAAGGTGAGCGCGCCCGCCTCGGCCAGCA 7074 29 100.0 32 ............................. CCCCCACCTCTCGTGGGCGGCTGTTCGGCGCA 7013 29 100.0 32 ............................. ATGCCGCCCTTTTTCGCGTCAGAGGAATATCC 6952 29 100.0 32 ............................. CTATGCGGCTGTCGCCTCAATGCCGAGCTTGG 6891 29 100.0 32 ............................. TTGTCGATGGTGGGCGTCTTTTCGCGGAGGAA 6830 29 100.0 32 ............................. CAAGCTCGCCAAGCTCAACCTCATCGAATACG 6769 29 100.0 32 ............................. CTGCCCGCGCCTGTTCCTGGCCGCGCCCGCGT 6708 29 100.0 32 ............................. TTCGCGGGGCGATCATGCGCAAAGCCAACATA 6647 29 100.0 32 ............................. TGCGGGGCGGAATCCACCCGTTTGGAGTCCGC 6586 29 100.0 32 ............................. ATGCTGGGAGACGCATAATGGACTGGCTGCGC 6525 29 100.0 32 ............................. CCGGCACGCAGCGCCTCGACGCGCTCCGCGTA C [6516] 6463 29 100.0 32 ............................. CGGTCGGAAAGGCGCTGCTCGGCCTCTGCCTC 6402 29 100.0 32 ............................. TGCTGCGCCTTGAGCGTGAGCGGGCCGCGCTG 6341 29 100.0 32 ............................. TTCTTGGCCTGCTCGGCAAGGTCGATGTACGA 6280 29 100.0 32 ............................. CGGTCAAGGCGCAAGGCCGAACGGGAATAGGG 6219 29 100.0 32 ............................. TGAAAAGGTTGGTGGTGTAGTCAGCAACGACA 6158 29 96.6 32 ............................T TACCACCCCTCGCTTGCCCGCCTTCCTCCATT 6097 29 100.0 32 ............................. GGCGCTGACACTGCTCCTGCGGCTGCTGGGCA 6036 29 100.0 32 ............................. ATGGCGACGCGCAAGAAAAAGGGTGCACAAGC 5975 29 100.0 32 ............................. GTGTAAGCGTTGCTTACGAGTTGAGCGCGACA 5914 29 100.0 32 ............................. TGCGCGAGCGGGTGGAGGCGCTGGAGTGGAGC 5853 29 96.6 32 ...A......................... TGGTGTTTGACGGCAAGCCTGACGAGGATACA 5792 29 100.0 32 ............................. CCGGCGGGCCTCAACCTGAAGATTGAAGTTGT 5731 29 96.6 32 .......................T..... TACCCGGCCAAGGTGTTCTTCTGGGAGCAGCG 5670 29 100.0 32 ............................. CACCCGGCCAAGGTGTTCTTCTGGGAGCAGCG 5609 29 96.6 32 ............................G CTCGCGGTCCTTCTCGCGCTGGGCGGCTTCCG 5548 29 100.0 32 ............................. TACACGTGCTCATGCAGGACGGGTGGGATGCT 5487 29 100.0 32 ............................. TGATTCTTGGTAAATTCAGTCATTTTCGTTTC 5426 29 100.0 31 ............................. TGGGGCATCCGCTCGCTGGGCCTTGACGCGC 5366 29 100.0 32 ............................. CAGTGCAATGCAGGCTCGAGTCCTGTCTCCGG 5305 29 96.6 32 .........................C... CACATGGCTCGAAAAGAGTGAGCTTTCCCCAA 5244 29 79.3 0 .............T..........ACGTT | T [5220] ========== ====== ====== ====== ============================= ================================= ================== 112 29 99.5 32 GTTCCCCCCGCGCCTGCGGGGATAGGCCC # Left flank : ACTGCCGTGTGCCTTCGAGGCAGTCAAACTATGGCGCAAACAACCCGGCATTGCCCTTGAACGACATGTACGGCGACTGACCGGCAGCCGCATGCGCAAGACCGGTACCATCCCGGCCATGATCGACCGCATCAAGGAGTTGTTCGATGCCGATGACCGTGGTGGTGACTCGTAACGTCCCTGATCGCTTCCGGGGCTTCCTGGCCTCTTGCCTTCTAGAGGTGTCGCCCGGAGTATACACCCACCCGCGCCTCTCTCGGGCTGTGCGCGAACGGGTGTGGACAGTGCTGGAAGGATGGTTTGCGGAGGTGGACGGAGCCTCCATCGTCATGGTCCATGCCGATGGGGGCGAAGACACCGGCCAGGCTATTCGCGTTCTCGGCGAGCCTCCGCGTACGCTTGTTGACGCGGATGGTGTGATCCTGAGCCGGATGCCACGACCGACTATCTCCTGGTAGTCGAACTTATTTTTATCACCTATAAGCAGATAGATAGCAAGA # Right flank : GCGTTCAAAAAGTCACTGCTTCGGCCCCTCACCTGGCCTTTCGAATCCCCTAAATAGGAGTCAATGAATATAGCAGAATTCCCATCAGTTTCTTAACTCTAGAAAATCCATCTGAAAGCATATCAGTCAGACAAAGAAGCCACGTGAGATTTCCAAGGTAGGAATAGGGTAGGAAAAAGAAAAAGCCCTTATGGAAATCTTCCATAAGGGCTTGTCTTTCTGGTTGCGGGGGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCGAGCTGCTCCACCCCGCGACACGATGTGGGGACTGCCTCCCCAGCGAAGAAGGTGTGTATACGCGGGGGCGGTCGGACTGTCAACCGCGCATTTACATCGCCGGGCAAATTCCTTATGTAGTGCGGGCCATGCAGAACAAGAACATCACCTCCCTTTCCGTCGTGCTGCCCGTGTACAACGAGCAGGACAATCTGCCCGCCCTGTTCGAGGAAATCCGCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCCGCGCCTGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //