Array 1 61525-64265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019724.1 Streptomyces pactum strain ACT12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 61525 29 75.9 32 AC..G........AC..A.....A..... GCCCAACCGGTCTGGTTGATGTCCCACCGGTA 61586 29 96.6 32 ...........T................. GTGCCGCCGTCGGTGGTGACCCAGCCGAGGCA 61647 29 96.6 32 ....................A........ TTGCAGCCGGTGGCGTCCAGCTCGACGACCCA 61708 29 89.7 32 CC...................A....... CCAGCGTCGCTCATGTGGACTCCGTCCGTGCC 61769 29 96.6 32 .................A........... ACCGTCGTTTTCTCCCACCTGGCACACCGGAT 61830 29 96.6 32 .......................A..... GTCGGAACCGTCTCCCGTACCGGCGGAGAGAA GG,GT [61839,61843] 61895 29 93.1 24 .....T..................C.... GGTCACTCGGCGTCTGTGGGTACG Deletion [61948] 61948 29 93.1 32 ...........A.............A... ACGTTCACGGCGAGCTCCACCGCCAGGCCGAC 62009 29 89.7 34 ......C...T..............T... AAATCGACCAGCGTATCTACGACCTCCGCCACGA 62072 29 86.2 31 ...............AT.....A..A... GCCTCGCGGCGGCCGCGGATCCCTCATGGGG 62132 29 89.7 32 AC.........................T. GTGACCAGGCGCACGCAGACCGGCATACTCGG 62193 29 93.1 33 ............T........A....... CAGACCTGTCACCCCAGAGCGCAGGTCGAAGGG 62255 28 89.7 32 .C.........T..-.............. TCGAGTGGGTCGATCGCCACCAGGCGGCCGAA 62315 28 93.1 32 ...........A........-........ ACGCAGGACGGGAAGACGCCCGCGCTGGAGCT 62375 29 96.6 32 ............................A GTCCGCCGGCCGACGCTCCCCGGCGAGATGAT 62436 29 93.1 32 ...........T..C.............. GCATCCACGTCGGTGGACGGTACGCCCAGTTC 62497 27 82.8 0 .....G...A............C....-- - Deletion [62524] 62526 29 89.7 32 .C...........C............T.. CTCCTGGAACTTCCGCTCCCATTCCGTGGAGC 62587 29 93.1 32 .................A......G.... GACATCAGCGCCTGTCTGGGGGTGCGTAGGGA 62648 29 93.1 32 ...........T.C............... TTCTGCGTCGCCTCGGGGTACGCGTCGTCGGT 62709 29 93.1 32 .C........................T.. TGATAGACGGTCTTGCCGGCGGCGTCCGGGTA 62770 29 86.2 32 .CA........A..G.............. TACAGCGCGCGGACGGAGACGATAGCGTTCAC 62831 29 82.8 29 ..................A..A..GTT.. TGGCGCTGCGTCAGGCCGGCCTCCAGATG 62889 29 89.7 32 ........TT...A............... TGCCCAGTCGTCGTGGTCGAGCTGCACGGCGT A [62902] 62951 29 89.7 32 .............CCA............. TACCTGGTCAGTGAGCTGGAGCAGATCCTCCT 63012 29 96.6 34 .....A....................... TAGAAGGGAGGCCCGGGGGAAGGGCACTGGTGCC 63075 22 69.0 1 ..T........C..........------- C Deletion [63097] 63098 29 96.6 32 .............C............... AACGCGAACGGCGCGCTGAGTTCTGACCAGGT 63159 29 96.6 32 .C........................... TTCGCCCGCCCGGTGCCGACGATGGTCCCGGC 63220 29 82.8 32 .C.........A.A...A.......A... TCGTGGACGTTGCCGTCCTCGTCGATGCCGGT 63281 29 89.7 32 ...........A..............G.T CAGCCGTCGCAGAAGGAGACGTCGTGGTCACT 63342 29 86.2 32 .............A....A....A....A ACGTATCCGTTCTCGAGACCGGGGATCTGATT 63403 29 96.6 32 ...................G......... GGCATGGACGTCTACCCGGTCACCGTGGTGTC 63464 29 100.0 32 ............................. TTCTGCCGCCCGTCAGGTGAGCCGGTCAGCCG 63525 29 93.1 32 ........T...........A........ TGGGACAGGCTGCCGACGGACACGGTCCGGTA 63586 29 96.6 32 ............G................ GTCACCATCGGCCAGGGCACGGATTTCGATTT 63647 29 93.1 8 ............TA............... TGCCACAG Deletion [63684] 63684 29 96.6 32 .A........................... GATTACACGGTCGAAGCCGTGGGCATCGGCGG CAGG [63690] 63749 29 93.1 32 ...........C..........C...... GATCCCGATTCGGGTTTCGTGGTGACGTCCGG 63810 29 96.6 32 .......................A..... GACAGCACAGCGCTGATAGCTTGCTTGATCGC 63871 29 93.1 32 ..........G..............A... GTCGGCGACGGTTCGACGTACCGGTGGTGGCT 63932 29 100.0 32 ............................. GAGGTCTGCCCATGGCAGGCAACTCTCGGCCG 63993 29 96.6 32 ..........T.................. TCCGCCAGGAGCAGCAGCCGCTCGATCGCCGA 64054 29 96.6 32 .........................A... GCGGTCTGGGACTCCGTCCTGGGCGACATCAT 64115 29 93.1 32 .....A....T.................. TTCTGCCGCCCGTCAGGTGAGCCGGTCAGCCG 64176 29 96.6 32 ....................A........ CCGGTGGGGTGGGCGGTGTGGCCGCATCACAC 64237 29 89.7 0 ............TA.............T. | ========== ====== ====== ====== ============================= ================================== ================== 47 29 91.9 30 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCGACACCGCCACCATCCCCACCCCCACCCAGCTGATCCGCGACCTCCACCCGCTCACCACCATCGACGACGAGAACCTCCTCGTGACCCGACTGGGCGCAGACAGCGTCCGCGTCCTGCCCGTCTGGACCGACACCAACGGCCGCCCCTGGCTCGACCGCCAGGCACGCCACCGGCCGCTCCCCACCCACATCGACCCCCGAGACACAGCCACCATCCGCAACCTCATGGCCCACACCGTCCAAGTCGACCACCGATGGCTCCAAGGACACGGCGCCGAAACCAACACCCCCACCACCTGGCGGCACATCGGTGCCCTCCAAGACGTCCTCCTCCTGCCACAACGCGTCACCAGCACAGGAAGACGGCCGTATCGACTCAACGGCAAAACCCACCACCTGTCCCGACTCGACGGCCTCGTACGCGAGTAACATCACAAACACACTCGCACCTTGAAAAAAGAATCACGCAACACCCACGACATCGCAGGTCACGAAAT # Right flank : GTCGGCGACGGCTGAAAAGTGGACCAGTAGCGGCGCTTGAAAGTTGACCCTCTCCAGGGGTCTGGCTCGTTGAGTCAGGCCGGGAGGAGTGGTGATCAGCGTGGAGGACTGGGCGGAGATCCGCCGGCTTCACCGGGCCGAGCAGATGCCGGTTCGGGCGATCGCAAGAAAGCTGGGGATCGCGAGGAACACTGTCCGCAGGGCGATCGCGGACGACGCGCCGCCGAAGTACCAGCGGGCTCCGAAGGGCTCGATCGTGGACGCGGTCGAGCCGCAGATCCGTGAACTTCTCGAGCAGTGGCCTGAGATGCCGGCGACGGTGATCGCCGAGCGGATCGGCTGGGACCGTGGTCTGACCGTGCTCAAGGACCGGGTCCGGGACCTGCGGCCGGCCTATCGGCCTGCGGATCCGGCCTCGCGGACGGTCTATGAGCCGGGCGAGATCGGCCAGTGCGACCTGTGGTTCCCGCCGGCCGACATCCCGCTCGGCTTCGGCCAGG # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66527-66737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019724.1 Streptomyces pactum strain ACT12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66527 29 89.7 32 .C........T..A............... CAAGACGAAGTCGCGGGCTCCGAGTGGACGAT 66588 29 96.6 32 .............T............... TGGTGGAAGTGCCCTGTGATCAGGATGTCGGC 66649 29 100.0 31 ............................. GAGTCGGAGCGCTTCAGTGTGAGGGTGCAGG 66709 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCACCGGGTCGCCTTCGGCACCGCCGCCCAGTGGGTCACCCGCCTCGCCGAAGCCCATCAAGCAGGGCGTCTGAGCGATGAGTTGACCCGGCTGGGACGGATCCCGTTGATCGTGGTCGACGAAGTGGGTTACATCCCTTTCGAGCCCGAGGCGGCGAACCTGTTCTTCCAGTTCATCTCGGGCCGCTACGAACGCGCCTCGGTGATCGTGACCAGCAACAAGCCCTTCGGGCGCTGGGGCGAGGTCTTCGGCGACGACACCGTCGCCGCCGCGATGATCGACCGACTCGTCCACCACGCCGAGGTCATCTCGCTGAAGGGCGACAGCTATCGCATGCGCGGCCGCGACCTCGGACGGGTTCCCGCCGCCAACACCGGGGAATGACCAACATCAACTGACGCAGCGGGGGGTCATTTTTCACCCGCCGGAATCGGCTCACATTTCAAGCGTCGCCGACAGTGAGCCGGGGCCTGACGAGGCTCTGGAGTGCAAGGACGT # Right flank : GAAGCACACCCGCTTCCGCGGTGGTGCTTCGGCGTAGGCGCCCATGTCGCTCCTCAGTTCGGTGTCCTCCCCGTCCGCAGGGCTGTTGGGTCACCCCCGGCAATCATGAGCAGGACATCCATCCCGCAGCTACTGCAGCTGAGCTGCGGCGCCCGGCGTGCAAGATTGCCCGCAGCCCAGGCCGACCAGACCCTGCCCTCAGCTGGTGGGCGATGCGCGGCGCGGCGGTGGAACTGCCCGCAGCAGTTCCCAGAGCGGCCGTGAGCCGGACGCCCATACGGCAAGTGTCTGGCGGTCGACCACGTGGAGCCGCTGTTGCTTGGCGAAGGTCACGGCCGGGCCGGTCACGCGGCCGTTGGTGACAATGACTGCGACGTCCGCGCCGTGCACCTGCCGGGCCGTTCCGTTGAGTACCTGCAGGTCAGGTGTGCCCACCGGTGAGCCTTGAGCGCCGTTGCGGCGGTGCTTGCACTGGAACACGCTTGAACGGGTCTGTGGCC # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1934226-1933220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019724.1 Streptomyces pactum strain ACT12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1934225 29 100.0 32 ............................. AGCGGGTTCACCGTGATGTACCCGGCGTCCAC 1934164 29 100.0 32 ............................. CATCGGTGGGCCTGGCCGGAGTTGGCGGATCC 1934103 29 100.0 32 ............................. CCCCCGGCGGGGTCACCCCCGCCGCCTTGAGT 1934042 29 100.0 32 ............................. GGTCGCCTTGATGTTCAGCTTTCCGATGTGCC 1933981 29 100.0 32 ............................. CTTCGGGACGATGGGGTAATCCACGAAAGGGA 1933920 29 100.0 32 ............................. AGCGGCTTGAGGACGGACTCCCACATGAACTT 1933859 29 96.6 32 ............................A CCTCCGGCGCGTTCTGCTATCCCTCTCACCCA 1933798 29 100.0 32 ............................. TCGCCGGTCACCTCGTCCACGCCGATGCCGAC 1933737 29 100.0 32 ............................. GGCACCGCGTCACGAATCGACCGGGCTACGAC 1933676 29 100.0 32 ............................. CGAGGCCGCTCCACCAGCTTCACGCTGTACCG 1933615 29 100.0 32 ............................. ACGTAGTACGGCCGACCAGCCCCGGAGGGCTA 1933554 29 100.0 32 ............................. CACCAGGCGCGCCGGTCCGGCGACGGGGACGC 1933493 29 100.0 32 ............................. GCGGCCCCCATCACCACCGACCAGCGCGCCAC 1933432 29 100.0 31 ............................. GCTCACGGCCCCCAGCACGTACGGGCCTGGC 1933372 29 96.6 32 .......T..................... AGCGGCAAGGACGTGCGCCCGTGAGCGCCGAA 1933311 29 89.7 32 ........T........A.......C... CGGTCGTCGGCGTCGCGCTGGAGGCCAGCCAT 1933250 29 89.7 0 .................A...T.....T. | CC [1933225] ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCTGCGCGGCCATCAGGGCCTGGAGCTCGTCGCCGACTTCCTCAAAAGCGACAGCGTCCGCCACCTGTTCGGCCACGGCGAAGGCTTCCCAGGCGGCTGCCATGACCTGGGCACGGTCCGTCGAATCCAGGGACGCGTCCAAGGGCTTCAACGTGTCTGGTAGTGACACTCCGATACTCCATGTCTCGCTCAGTCAGGCAGAGATCGTCTCACTCGGTGAAGACAACGCAGGGCGCCCTGTGGATAACCACCTAGGGCTCGGTGTTGAGCCAGAAGGACAGGCCCTACAGGTGGGAGCGGCCGTCCTGGGCGAGAATGGGAGTAGAGGAGGTTGTCGTGTCATCACCGTTCCTTCGGGACACGGATCAGTGCGAGGTTGACGTAGGACGCAGCCCGCTCGACCCCAGTACGTAATCGGCTGCAATGCCTCATTTGCCGGAATCCCTTAAAGTCCCTGAGAACACGCTTCGGCGGTCATAAACTCGCAGGTCGAACAGT # Right flank : ATGGCGACGAGGCGCTCAACTGCTGACGCCGTCGCGCAGCAGCGTTCTGCCGTGCCCCGCGCCCCGGTCAGCGCACGGCACGGACCATCACAGTCAGGACCGGCGACGCCGGTGACGGCTGGCTCTGTCCGATGTCCTCGTACCCCCACGACCGGTAGAGAGCGTGGACCTTTCCGTCCCCGGCGGCCGGGTTGACCATCAGCGTGACGAACGGTTCGTCGCGCGTGGCGAGGAGGGCGTCGTGGATACGCCGGGCAGTGCCGGTCTTCCGCCACGCCGGCCGGACGCCGATCTCCTTCAGAGCCACGGCCGGGCGCTCGGCGTATGGGGCCGCAGGCGCCGGGCTGGTGCGCTGCCAGTAGCGGTCGCCGTGCTCGATGGTGTTGGCGTAGGCGTATCCGACCGGATGCTCGTCCGCGTAGGCGAGGACTGCGGTGAATCCCGGCTCGCCGCCGTGCCGGTCCAGGCGCTCGCCGAAGGCGGTGACCGCGTAATTGGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1940246-1939607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019724.1 Streptomyces pactum strain ACT12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1940245 29 100.0 32 ............................. GAATCCAAGGCCACGGGCCCCGCTCCCTGGCG 1940184 29 100.0 32 ............................. GTCATGTGCCCGCCCGCGATCGGCTGCTACAA 1940123 29 100.0 32 ............................. GTCATGTGCCCGCCCGCGATCGGCTGCTACAA 1940062 29 100.0 32 ............................. CGGGAACCGAGCGCTGGGGTAGGCACGGTCCC 1940001 29 100.0 32 ............................. GCTGATCCTGCGGTGACGATCCCGCAGATGAT 1939940 29 100.0 32 ............................. GCCTGCCGGTCCTGCTCCCGCTGCGACGGCTC 1939879 29 100.0 32 ............................. GCGTGCGTGATGGGCGGCATCGTCTACCTCCC 1939818 29 100.0 32 ............................. GACGCCAACCGCAGCGCCTACGACGCGCAGAT 1939757 29 100.0 32 ............................. TGACCCCAGTTCGCACTACCTTGCTGATCCCG 1939696 29 100.0 32 ............................. TGCTGGCGGGGCACGAACGCGGCCACGAATTT 1939635 29 96.6 0 .......................G..... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATAGTCCC # Left flank : GCACGCGAACGCCGGGGTGGCCTTGCCGACGTCGTGCACACCGGCAAGCCATACGGCAAGGGCACGCGCGTCCGGCTCCCCCTGCGGCAACGCCTCGGCGATCAGCTTCCGCACTCCTGCGGGCAGCCACCGGTCCCACAACAAGCCCGCCACCGCGGCACTGTCCTCCATGTGCCGCCATAACGGCAGCCAACCGTCGGTGTCATAATCGTGCTTGGCCCATACCGACCTAGCCGGCTCCCCAAGCCGACGTAGCAGGCCAGAACGGGCGTTCCTCCCATCCCTCCTCATGAGTGATTGATACAGGGAAAACCCGGTTCCACACGCCAGAACGAGAAAACTGAAGGGTTCGCAGGGAGACGGCGCTCTCAAGCCGTACGATGATCGGCTACTTCCGGGACCACTTGCGGATCGAAGGACGCCATATGTCTAATTTGTCGGAATCTGTGAAAGTCGCTGAAAGTACACTTCTGCCTCAGTAAACTCGCAGGTCAAACAGT # Right flank : GCGACGAGGGCTGTCTGGTCAGACGCCGTCGGGGCGCAGCGCGCTCAAGAAGCTGCTCCATGCGGGGGCAGAGACGGGAAAGGGGCGGCGATCGCGGTCCTTGGCGTCACGGACCAGTACGCCGGCGCCAACCGCGGCAACGCAGGCCTCCACGCAGGCTTCCTCGAAGTCGGTGCTGTAGCTGCTCTTGTACCAGCCCGTGGGCGGGAGCGGCATGAGGTCCTCCTGACAACGGTTGGGAGCGGGCGGAGACCCGTGCCCGCCCGGCGGAGACTACGGATCAGCAGACCTGCCCGCAGGCGTGTTGTTGTGCAGCAACCCGAAGGAGAATAGGGGAGACGTCATGTCGCATGAGGCAAGGCCGCCACGGTGGACGGCGCAGGAGATGGACGACTTCGAGAAATTCAGCTCCAGCTTGGTGAGGGTCCATACGGCGGTTTGTAAGGAACCGGCTGGCCCGACTTCGCGTCCAACAGAATACGGTCCCCCAAGGGGTGCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1950037-1950986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019724.1 Streptomyces pactum strain ACT12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1950037 29 100.0 32 ............................. GGAGAGCAGTAAATGGAATTCACGATCTCGAC 1950098 29 100.0 32 ............................. GGACGGATGGAGTGGACGGACGGGGACGGAGC 1950159 29 100.0 32 ............................. GCCTGCCCGACCACATTGTGGGAGCGCCTCCT 1950220 29 100.0 32 ............................. GCCGGTGGCTCGCTGAAGAGGAGGTCGGCGCT 1950281 29 100.0 32 ............................. CCGCTGGCAGCCTGATGGCTGTCACGTTCGAG 1950342 29 100.0 32 ............................. CTGGCCCGCATCGCGCTCCGCAAGATGTGCCT 1950403 29 96.6 32 ............................A CCCGGCGGCCGCGAGGCGGTCCGTCGTGCGGG 1950464 29 100.0 32 ............................. GGGGCGCGAGTTTGGGAGCGGACGGCCCGGAG 1950525 29 100.0 32 ............................. GACCGGGGCCTGAAGGGGTGCGGCCGGTCCGC 1950586 29 100.0 44 ............................. GGGTCCGGGTCCGGGTCCGGGTCCGGGTCCGGGCGCTGATGCTC 1950659 29 96.6 32 .......................G..... TCACGTGCTGGCCCGCCTCATACCGCCACACA 1950720 29 96.6 32 .......................G..... GCCATCGACGGCTTCACCCTCGAGAACACGCC 1950781 29 96.6 32 .......................G..... GGTCATCTATCTCCTTCGGTGGCGGGTGCCTT 1950842 29 96.6 26 .......................G..... GACTCCGTCACCACGGACGCGTCCGG 1950897 29 89.7 32 .................C.....G.C... TGGGCCATGATCTGCGCGGCCTGGTCCAGTTC 1950958 29 86.2 0 ....................CC.G.A... | ========== ====== ====== ====== ============================= ============================================ ================== 16 29 97.4 32 CTGCTCCCCGCACCCGCGGGGATAGTCCC # Left flank : AGGCGTCAACCACGATGGCCCAGAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTGACCAACTGCCCGGCCGGCCTACGCGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCCGGCGTGTTCGTGGGCAATCCCTCCGCCCGGGTCCGCGACGCCCTCTGGGAAGAAGTCCGCCAGTACGCAGACCAGGGCCGCGCCCTGCTGGCCCACACCATGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCGTCACCCTGATCCACCGCCCAGACCCGAACGCACCCACCGCCGCCCCAACTCCCCGGAACGGTCCGCCATCCGGCTGGAGCAGAGCCTCCAAACGCCGACGCTTCGGCAGAGGCTGATGCAAGTCGAGCCACGTATGCCCTATTTGTCAGAATCAAAGCAAGTACTCGAAAACGGCCCGCAGCGCCAGTAAAGCCGCAGGTCATCCAGT # Right flank : CTCGGCCGAGCCCGCCGGCCCCGCGCTTGATCGACGTCCTGTCCACAGAGCAGACTGCTTCTCATGGGATCAGTGGGCATGGCCACCAGGCTGCGGATCGGACAGTGCCGATGAGTGCCGCCCTGCCCTTCTTCCGTTATCACCCAGACCCCCTTGCAAGCGGGTCCATCTGCGCGGCCGCCGAGACGTGTGCCTGCTGCCGGCGCGACAGAGGATGGATCTACACGGCAACCTTCTACTCCGCTCAGGACGTCAGCGGTCGGTTCTGCCCTTGGTGCATCGCAGACGGGAGCGCAGCGGAACGCTTTGCGGGTGAATTCACTGACTCCTACGGGCTCGACGGTGTCAGCGAGGACGTATTGCACGAGGTCACCCGCCGCACCCCGGGATTCCACGCCTGGCAGGATCCGCACTGGCTCGTCCACTGTCAGGACGCGGCCGCCTTCGTGGGCGAAGTCGGATACGCCGAGCTGGCGGCGCATCCCGAAGCGCTAGACCAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 8489270-8486529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019724.1 Streptomyces pactum strain ACT12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 8489269 29 75.9 32 AC..G........AC..A.....A..... GCCCAACCGGTCTGGTTGATGTCCCACCGGTA 8489208 29 96.6 32 ...........T................. GTGCCGCCGTCGGTGGTGACCCAGCCGAGGCA 8489147 29 96.6 32 ....................A........ TTGCAGCCGGTGGCGTCCAGCTCGACGACCCA 8489086 29 89.7 32 CC...................A....... CCAGCGTCGCTCATGTGGACTCCGTCCGTGCC 8489025 29 96.6 32 .................A........... ACCGTCGTTTTCTCCCACCTGGCACACCGGAT 8488964 29 96.6 32 .......................A..... GTCGGAACCGTCTCCCGTACCGGCGGAGAGAA GT,GG [8488949,8488953] 8488899 29 93.1 24 .....T..................C.... GGTCACTCGGCGTCTGTGGGTACG Deletion [8488847] 8488846 29 93.1 32 ...........A.............A... ACGTTCACGGCGAGCTCCACCGCCAGGCCGAC 8488785 29 89.7 34 ......C...T..............T... AAATCGACCAGCGTATCTACGACCTCCGCCACGA 8488722 29 86.2 31 ...............AT.....A..A... GCCTCGCGGCGGCCGCGGATCCCTCATGGGG 8488662 29 89.7 32 AC.........................T. GTGACCAGGCGCACGCAGACCGGCATACTCGG 8488601 29 93.1 33 ............T........A....... CAGACCTGTCACCCCAGAGCGCAGGTCGAAGGG 8488539 28 89.7 32 .C.........T..-.............. TCGAGTGGGTCGATCGCCACCAGGCGGCCGAA 8488479 28 93.1 32 ...........A.........-....... ACGCAGGACGGGAAGACGCCCGCGCTGGAGCT 8488419 29 96.6 32 ............................A GTCCGCCGGCCGACGCTCCCCGGCGAGATGAT 8488358 29 93.1 61 ...........T..C.............. GCATCCACGTCGGTGGACGGTACGCCCAGTTCGTCCTGTCCACGCGAGCGGAGGACGAAGC 8488268 29 89.7 32 .C...........C............T.. CTCCTGGAACTTCCGCTCCCATTCCGTGGAGC 8488207 29 93.1 32 .................A......G.... GACATCAGCGCCTGTCTGGGGGTGCGTAGGGA 8488146 29 93.1 32 ...........T.C............... TTCTGCGTCGCCTCGGGGTACGCGTCGTCGGT 8488085 29 93.1 32 .C........................T.. TGATAGACGGTCTTGCCGGCGGCGTCCGGGTA 8488024 29 86.2 32 .CA........A..G.............. TACAGCGCGCGGACGGAGACGATAGCGTTCAC 8487963 29 82.8 29 ..................A..A..GTT.. TGGCGCTGCGTCAGGCCGGCCTCCAGATG 8487905 29 89.7 32 ........TT...A............... TGCCCAGTCGTCGTGGTCGAGCTGCACGGCGT A [8487890] 8487843 29 89.7 32 .............CCA............. TACCTGGTCAGTGAGCTGGAGCAGATCCTCCT 8487782 29 96.6 57 .....A....................... TAGAAGGGAGGCCCGGGGGAAGGGCACTGGTGCCGTTCTCTCCGCCCGAGCGGAGGC 8487696 29 96.6 32 .............C............... AACGCGAACGGCGCGCTGAGTTCTGACCAGGT 8487635 29 96.6 32 .C........................... TTCGCCCGCCCGGTGCCGACGATGGTCCCGGC 8487574 29 82.8 32 .C.........A.A...A.......A... TCGTGGACGTTGCCGTCCTCGTCGATGCCGGT 8487513 29 89.7 32 ...........A..............G.T CAGCCGTCGCAGAAGGAGACGTCGTGGTCACT 8487452 29 86.2 32 .............A....A....A....A ACGTATCCGTTCTCGAGACCGGGGATCTGATT 8487391 29 96.6 32 ...................G......... GGCATGGACGTCTACCCGGTCACCGTGGTGTC 8487330 29 100.0 32 ............................. TTCTGCCGCCCGTCAGGTGAGCCGGTCAGCCG 8487269 29 93.1 32 ........T...........A........ TGGGACAGGCTGCCGACGGACACGGTCCGGTA 8487208 29 96.6 32 ............G................ GTCACCATCGGCCAGGGCACGGATTTCGATTT 8487147 29 93.1 11 ............TA............... TGCCACAGGAC Deletion [8487108] 8487107 29 89.7 32 C...AG....................... GATTACACGGTCGAAGCCGTGGGCATCGGCGG G [8487101] 8487045 29 93.1 32 ...........C..........C...... GATCCCGATTCGGGTTTCGTGGTGACGTCCGG 8486984 29 96.6 32 .......................A..... GACAGCACAGCGCTGATAGCTTGCTTGATCGC 8486923 29 93.1 32 ..........G..............A... GTCGGCGACGGTTCGACGTACCGGTGGTGGCT 8486862 29 100.0 32 ............................. GAGGTCTGCCCATGGCAGGCAACTCTCGGCCG 8486801 29 96.6 32 ..........T.................. TCCGCCAGGAGCAGCAGCCGCTCGATCGCCGA 8486740 29 96.6 32 .........................A... GCGGTCTGGGACTCCGTCCTGGGCGACATCAT 8486679 29 93.1 32 .....A....T.................. TTCTGCCGCCCGTCAGGTGAGCCGGTCAGCCG 8486618 29 96.6 32 ....................A........ CCGGTGGGGTGGGCGGTGTGGCCGCATCACAC 8486557 29 89.7 0 ............TA.............T. | ========== ====== ====== ====== ============================= ============================================================= ================== 45 29 92.4 33 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCGACACCGCCACCATCCCCACCCCCACCCAGCTGATCCGCGACCTCCACCCGCTCACCACCATCGACGACGAGAACCTCCTCGTGACCCGACTGGGCGCAGACAGCGTCCGCGTCCTGCCCGTCTGGACCGACACCAACGGCCGCCCCTGGCTCGACCGCCAGGCACGCCACCGGCCGCTCCCCACCCACATCGACCCCCGAGACACAGCCACCATCCGCAACCTCATGGCCCACACCGTCCAAGTCGACCACCGATGGCTCCAAGGACACGGCGCCGAAACCAACACCCCCACCACCTGGCGGCACATCGGTGCCCTCCAAGACGTCCTCCTCCTGCCACAACGCGTCACCAGCACAGGAAGACGGCCGTATCGACTCAACGGCAAAACCCACCACCTGTCCCGACTCGACGGCCTCGTACGCGAGTAACATCACAAACACACTCGCACCTTGAAAAAAGAATCACGCAACACCCACGACATCGCAGGTCACGAAAT # Right flank : TCGGCGACGGCTGAAAAGTGGACCAGTAGCGGCGCTTGAAAGTTGACCCTCTCCAGGGGTCTGGCTCGTTGAGTCAGGCCGGGAGGAGTGGTGATCAGCGTGGAGGACTGGGCGGAGATCCGCCGGCTTCACCGGGCCGAGCAGATGCCGGTTCGGGCGATCGCAAGAAAGCTGGGGATCGCGAGGAACACTGTCCGCAGGGCGATCGCGGACGACGCGCCGCCGAAGTACCAGCGGGCTCCGAAGGGCTCGATCGTGGACGCGGTCGAGCCGCAGATCCGTGAACTTCTCGAGCAGTGGCCTGAGATGCCGGCGACGGTGATCGCCGAGCGGATCGGCTGGGACCGTGGTCTGACCGTGCTCAAGGACCGGGTCCGGGACCTGCGGCCGGCCTATCGGCCTGCGGATCCGGCCTCGCGGACGGTCTATGAGCCGGGCGAGATCGGCCAGTGCGACCTGTGGTTCCCGCCGGCCGACATCCCGCTCGGCTTCGGCCAGGT # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //