Array 1 271931-272686 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRZL01000001.1 Staphylococcus simulans strain 19 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 271931 36 100.0 29 .................................... ATTGTGAATAGCAAATATGAGGGCGAGAA 271996 36 100.0 30 .................................... GGTAGGCTTTAGCCAATGTCGTTCACTCCA 272062 36 100.0 29 .................................... ACGTTAGCAGAGGAAATTGACAATGGCTT 272127 36 100.0 30 .................................... TATCAAAGACCAATACATTGCAGGCGCAGG 272193 36 100.0 29 .................................... GAAAAGATGAGTGCTAACGTGCTTTTGCG 272258 36 100.0 30 .................................... TTATGAGAAAGCGTACGATTGCTTGCTTAA 272324 36 100.0 30 .................................... CTGTAATTTTAATAAATTTGTTAGGTTGAA 272390 36 100.0 30 .................................... AGGTTTCATTCGTATGCAGTCCATGCGTAA 272456 36 100.0 30 .................................... TCATTCATGTTATCGCTCCCTATTCAAAAT 272522 36 100.0 29 .................................... AGATAGCATTACAACGAAAGCACTTGAAG 272587 36 97.2 29 ................................A... ATTGAAGCGGTAGACGGCTTGAATGTCGT 272652 35 88.9 0 ...........G.................-.T..C. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTTAGAATTATGATCTTTTAGAATGAAGTAGAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGATTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAATTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGCTGGTTTTGTTATTCCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAATAAATATCTGCAAACTCTAAATATGTTTAGTATTATTGTTACGAGCCATCCTTATTTTATTATAGAGTCTGATACATTAGCGCTTATTAAAATGAATGGAGAGCCGGTGAATACTAAACAAATAAGAGAAGAGTTATTATTGTTTAAAGAAAAAGAATCAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTATCATTATAAAGATCTCTAAAACCTTGATTTCTCGTTGTTTGAG # Right flank : CATGGAGATTAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATACCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAGCGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTATGATCTTTTAGAATGAAGTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 13244-12027 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRZL01000005.1 Staphylococcus simulans strain 19 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13243 36 100.0 30 .................................... GACTTATGACAAATAAGATGCTGCGTAACC 13177 36 100.0 29 .................................... ACAAACAACTTAATAGGAGGATAATATGA 13112 36 100.0 30 .................................... GAGCGCTCCTTCGAATCACAAGAGCGTTCT 13046 36 100.0 30 .................................... GATGACTTATTAGCAGCGGTTGAACAATTT 12980 36 100.0 29 .................................... TAATCGGAGACATTACTAAAGCTGCGTGG 12915 36 100.0 30 .................................... AAGATTATCACATCTCAATTGTGGCCAACA 12849 36 100.0 29 .................................... AAATGTGATTTCTGCACGAACAGATGAAT 12784 36 100.0 29 .................................... CGAAATTAAAATTAAATGGTTGCAAGATT 12719 36 100.0 30 .................................... AAACTTGAATTATACGTGCTGGGATTCGTA 12653 36 100.0 29 .................................... ACTACTTCGACAAGTTGCCGATAAGTTTC 12588 36 100.0 30 .................................... TGACCTCGGTCTAGACACTTCCGATATCGA 12522 36 100.0 30 .................................... AAGAACAAGTATTAAAATATGATAAGGAAG 12456 36 100.0 30 .................................... TTATCGTCATACAAAGCGAACTTTTCTCTT 12390 36 100.0 29 .................................... TTTTCTTGCACGTTCTCTGATTAAATCAT 12325 36 100.0 30 .................................... ACGCTATCAAGTCCTAATGTAGTTGGAGCC 12259 36 100.0 30 .................................... TAAATTGAACGTGCTGAATTGCCAACTCTA 12193 36 97.2 29 ...........................A........ CACTAACGGTCGTGGCATTCAAACATGGG 12128 36 97.2 30 ...........................A........ ATTAAGTTAGGCTTTGCAGATGAGAAATCA 12062 36 88.9 0 ......................A.....T..A...A | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.1 30 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCACCTAGACATCGATAAGGAGAAAATTTCTTCAGCATTATCGGCGTATCTATTTTCTTAACCAAAATTCAAGTTTATAATTGTGCTAGAG # Right flank : AAAGATTTTTCTTGTTTTGATACTATAGTTTCAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATAAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACTCAATTACTACACGTTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACCCCTTTAGGTATCGCGGTAGTTTCAGCAGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAACATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //