Array 1 40-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKPJ010000026.1 Providencia rettgeri strain 2020EL-00015 NODE_26_length_42599_cov_33.208938, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 100 28 100.0 32 ............................ ACTGCTCGCAATCCGTTTTCATGCTCCTGCGG 160 28 100.0 32 ............................ TCACTATTAATAGCGATATGAATGATTAAGTG 220 28 100.0 32 ............................ CTAACACCCCTCATTTAAAGCTGGTATATCAG 280 28 100.0 32 ............................ AGTGGATTAAAGAGCTTAATTTATCAACTTAA 340 28 89.3 0 ...T......A.........T....... | G [366] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGAAACTAGGAACCCGATCACCCTCATGCATAGCTAAG # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGACCGGGTAATCAGATAATAATAGAGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 47236-48463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKPJ010000012.1 Providencia rettgeri strain 2020EL-00015 NODE_12_length_57947_cov_42.058717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47236 28 100.0 32 ............................ ACAGGAAATGATTTAAATGTGATCTCTCCATT 47296 28 100.0 32 ............................ TAGCGCACCACGTAATGCACCGCCTATTGTAA 47356 28 100.0 32 ............................ AACTCAACTCCATCATTTCCACTCGGCATCGT 47416 28 100.0 32 ............................ AAGTGAAATGTCTTCATCATCGAATGTATAAT 47476 28 100.0 32 ............................ ACATCGGAATCGTGGCGTGATAAACAATCAGG 47536 28 100.0 32 ............................ CCTACCCGATGGATCGTACGGTTTTATCTCAA 47596 28 100.0 32 ............................ AGTCAATGAACCTATCATTGAACCTAATAAAT 47656 28 100.0 32 ............................ CGACTATTGCGCCTTGTAGGTAACTGTTCTCA 47716 28 100.0 32 ............................ GATCACCGGTGAAAATCACAATCAACATAATA 47776 28 100.0 32 ............................ TCGCACAATTGCTGCAAATGGTTGCCGTAAGC 47836 28 100.0 32 ............................ TTTATGGATGCACTCATTACCGGTCGAAACCA 47896 28 100.0 32 ............................ TAATGGTATGCCAAGCGCTACCAACGAAATAA 47956 28 100.0 32 ............................ AATTACATGGCACCCTTGGTCTACACTCAGAT 48016 28 100.0 32 ............................ TGACAAATCTAAAATTTTCAATGTCAACAATA 48076 28 100.0 32 ............................ TATCAAAGTGGGTAAAGGCGAAGAGTATGAAA 48136 28 100.0 32 ............................ ATCATCGAAAACGAACTCTGAACCTTTTAAGT 48196 28 100.0 32 ............................ ATCTATCACTATTGGTGATTCACTGATTGCAT 48256 28 100.0 32 ............................ AGTCATCCTCTTTATCTATCGTGTAGATGATG 48316 28 100.0 32 ............................ TCATGCTGATGAATGGGATCAGGATGTTCTCT 48376 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 48436 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.2 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAGCCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTAACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAATGCCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAACTAGTACATTGTTTTTCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGGAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATCTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 57101-57908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKPJ010000012.1 Providencia rettgeri strain 2020EL-00015 NODE_12_length_57947_cov_42.058717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57101 28 100.0 32 ............................ ATTATACCGCAAGCTGAAGTGGGTATTTATGT 57161 28 100.0 32 ............................ GCAACCGAATACTTCGACGCAAAACCAGACTA 57221 28 100.0 32 ............................ GCGATGGTGACTGCACTTGATGTCCGTCATAA 57281 28 100.0 32 ............................ ACATGAAAATCGCCAGTGAATGCCTCTTGGTT 57341 28 100.0 32 ............................ CCCATTGAATGCGAACGCCTACAGGGCTTTCC 57401 28 100.0 32 ............................ ATTTTTTGCCGTTCCACTTATCAAATTCTGTT 57461 28 100.0 32 ............................ GAAGATTTAATTTCCCTTGGCAATATCAACCA 57521 28 100.0 32 ............................ ATTGAAGTTAATACTGGTGTAGCCGCTGTTGT 57581 28 100.0 32 ............................ TTGAAATTTCAATTCTAGCAGATGATATTTCT 57641 28 100.0 32 ............................ AACTTGCGATCTATTGCCTTAATTTCCTCGTC 57701 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 57761 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 57821 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 57881 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAATCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAAGTTTTAAATCAGCATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : TCAGAAATAGCAAAGAATCTCACGATTTCCGAGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //