Array 1 97120-97745 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVT01000001.1 Blautia coccoides strain NCTC11035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 97120 32 100.0 35 ................................ ATGGGTTGCACATGTGCATCCTCAGAGAACATATC 97187 32 100.0 34 ................................ ATGGCTGGACTGCCGGCAGACTTCCTGGAAGTGG 97253 32 100.0 34 ................................ GCACATGACATCAAAATATCTCTTGTACTCCTCC 97319 32 100.0 35 ................................ ATAACTCCGGCGGCGCAACTGGCGGGAAGCGTCGC 97386 32 100.0 33 ................................ CCTACGTCCATGCTCCGCACTACAACAACAAAA 97451 32 100.0 33 ................................ TTTTCAACTAATTTTGATTTTGGATTGAATTAT 97516 32 100.0 35 ................................ ATTGTACAGGGGACGGAATACAAGGAAAACGGCCA 97583 32 100.0 33 ................................ CCTTACTGCTACCGTCCAGGGAATTATAGGTAT 97648 32 100.0 34 ................................ TTGATACAGAGGGCTGCGAAGGAGGACATGATTG 97714 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCACTTCCCTTGTGGAAGTGTGGATTGAAAT # Left flank : TTGTGCCGATTCTGGAAGCTGGTAAATTTTTGCGTGTTGGCAAGGGGGCTACAATCGGCTTTGGACACTATGAAATTTCTTATGATAAATAGAGGAAAGAATGAAAAGATAGTTTAAAATCGTAGTTTACGTATTTAAATAAAGTATATTTGGAAATTGCTTATTTATCATTTTTAAGCAGAATAGAATGAGTCTAAATTATCAGCCCATTATTCGGTGGTGTTTCCATGGACTTCAATAAGGACTTCATTATTGCGGCAGTTCATATTGAAGGTAATAGGATAGGGACTCGGAGTTATAAGAGTTTTATAAATGTCAGGTGCGAATATGGAGTGAACATAGTTTTCCAGGGAGACTCGCACCTGAAAAAAGTATAAAAATGTGTAGTTATGGCGAATTTATGGATTATATTTCAACTTAAGGTTGCATTTTTTAGAGAAAAAGGTTAGAATTTAGTGGAAAGATACAATATTTATATAGTGATATTGTGCATTTTTGCG # Right flank : TACTTGACTAATCCGAGGGTATGAAGAAAAGTCTGTAAATAGGATTCTTCTATGATAAGACTTGGTGGAATGCTTAGAAATTAGGTATTCCACCTTTGTTTTATATATACCATCCAGAGGATGGCATGTCAATAGCAGGCGGCTTTTCCGCCTGTTTTAACCAAACTGTTTTTTATTCTGGAAGCCGTCCCTCATACATAATACTCAGTTCACCGTAGACCTGGCCCCAGTTCCGGATGGTGGTAGTCCACCTTTTTGTTGCTTCAAAAGTGGCTAGATACAGGGCTTTCAGCAGCGCTGTATCGCTCGGAAATACACTTCTCTGCTGGTTTAATTTCCGATACGTGGAATTCAGGGATTCTATGGCATTGGTCGTGTATATGACCTTCCGGACATCTGCTGAAAACTTGAAGATCGGAGAAATAGAATCCCAGTTATCCTTCCAGCGTTTCATGGAATTCGGATATTTTGGTGTCCATTTCTCTGTTACCCTCTCAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGTGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 1641149-1638562 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVT01000001.1 Blautia coccoides strain NCTC11035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1641148 33 100.0 34 ................................. GTTCCGCCGGTCGCTCATAATCAACTACGTAACC 1641081 33 100.0 35 ................................. TTCTCTTTCTATAATGTATTTACAGCCACCGCCAG 1641013 33 100.0 33 ................................. ACTGCCGATAATGGAGAAACGCCAGGCAAATGG 1640947 33 100.0 34 ................................. AGTGTCTCAAAAAATGGTGGAAAACAGCCCCTGG 1640880 33 100.0 35 ................................. CCTAAAATCCTGGTCCTGGATGAGCCGACTTCCGG 1640812 33 100.0 33 ................................. TTGTTTTACATTTATCGAACGGATCTGCAGCCG 1640746 33 100.0 35 ................................. ATATTATCCGTCTTTCTCCCGGCTTTCCCGGCCGG 1640678 33 100.0 35 ................................. TTTGCGGCTTTCTGGTCTTTATCAAATTTTAGGCG 1640610 33 100.0 35 ................................. CTCATATCATAGTCAACATTGGATTTGGCTCTCTG 1640542 33 100.0 34 ................................. TGCAAGTACAGGTAAATTTAAATATTGTACTTAT 1640475 33 100.0 35 ................................. ACATACTGACCTGCGTTGATATGATATCCTCTTTC 1640407 33 100.0 33 ................................. CCCTCAGTGCGTCAGGGAGCACATCCGCCGTGG 1640341 33 100.0 35 ................................. TGTTAAATACCAGTTTTTCTCATTTGTAGTAAGTG 1640273 33 100.0 34 ................................. GTTGTATGTATCCCGGATTTTCTGGCATTTCTCA 1640206 33 100.0 35 ................................. TAAAGCCGCATCGACCAATGGTTCGAGTGCATTTT 1640138 33 100.0 34 ................................. AAAATCAGTGGACCTTCAGATGTCACCCTACAGG 1640071 33 100.0 34 ................................. TCTTTTTAACTTATCATAATCAGACTCTATCTGA 1640004 33 100.0 35 ................................. CATTTTCCGGTCACAGAACCAGATCGTGAAGGTGT 1639936 33 100.0 34 ................................. TTTTTGAAGTGATCGGAATCTGAATTTTTGAACC 1639869 33 100.0 33 ................................. TTACTTATTGGTGGTGGTCGGCGTGCTGGCCTT 1639803 33 100.0 33 ................................. TTCCATGAAATTAAAGATCCCTTTTTCAGTTCT 1639737 33 100.0 34 ................................. AAATTAGGTTATGTATGTCCGTCAGAAAATGGTT 1639670 33 100.0 33 ................................. TGGAGGTTCCGGAAGGCGGAGAATTAAAGCATG 1639604 33 100.0 35 ................................. AGTCCGGATACCCTCTTTACGAATCCGAAAAATCC 1639536 33 100.0 35 ................................. TATCCCGTCTACTCGCTGCGCCTCACCCCCTGAGC 1639468 33 100.0 34 ................................. GTCTGTTGATGAATTGAAAACATGGCTTGCAAAC 1639401 33 100.0 36 ................................. GAAACTTCTCATATTTATCCCCCTTATAATCGTATT 1639332 33 100.0 34 ................................. GCAATGATAAGTTTCTTTCATATAATCAAAAAAG 1639265 33 100.0 34 ................................. CCTACTGACAGAACACGTCTGGCAACAGCCTCCC 1639198 33 100.0 35 ................................. TTTTGCAAAGTGCTAAACCTCACGGCAGACCGAAA 1639130 33 100.0 34 ................................. CGGTCTGACCGTTTCATTTACAGAGATTGCTTTG 1639063 33 97.0 33 .....................A........... TTTAGACTGGTATGTCAAAACATACCCCGAGAG 1638997 33 100.0 36 ................................. AAGGAAACAGAATGGTAAAAAGGTGGTGAAGGGGAA 1638928 33 100.0 34 ................................. GGTGAATGGCTGTTTGCGGGACTACTCGAAGACA 1638861 33 100.0 34 ................................. GGGTTGTAGCCTTTGAGCATAAGCAGGATCTCGA 1638794 33 100.0 33 ................................. GACTGTATCTTAGGGAAGGTGTCGGCACAGATA 1638728 33 100.0 34 ................................. CGGTGTTTAAGATGATAATAGAGCTCTTGGCTCC 1638661 33 100.0 34 ................................. TCAAAAGGATGGTTGTCAGGTGGCAGAGATAAAA 1638594 33 97.0 0 ...........................C..... | ========== ====== ====== ====== ================================= ==================================== ================== 39 33 99.8 34 GTCACTCTCTGCGAGGAGAGTGTGGATTGAAAT # Left flank : CAGCGGAGGAAGCCAGAAAGGAACTTCTTCCGCAAAAACCGGAGATGAAACGCCTATCGGTATGTTTGCAGGCTTTGGAGCTGTGGCACTGATCGCTATCTTCGCTTGTACACTCAGCATTTTGAGGAAAAGAAAAAAATATAATTAATTTTAACAATTTACAGCAAATAGCTTCACTTATTATTTTACATACTCCCGGCAGAAGATTTTTTTCTGCCGGGAGTATGAGACAGAGATAAAAGACTCTGTTGAATTGGTAAATATTTTTGATATTTGGAATAAAAATATCAGCAAGCAAAAGAATACTCCGCACATTTGTGCAGGGTATTCTTTTTTTGCAGTGCGAATGTCAAGTGAACATGAAATACCAGGGGGATTCGCACCTATATTTTATTGGAAAAAATATGATATATGTGTTAGAATAAAAAATAGATATATAGAATATGTGATAAGTGTGCAAAATTCCTATGAGTAATATGGAACATTTGGGAGATTTTGCT # Right flank : TCCCGAAGTGAGAGGATTTAAGCATAAGTTCCCAGACAATTCTCATATAGTCATATGCGCCAATCTTCACAATCAGGGGCAAAATGTATATATACTACTTCAGTCCATTCCTTTTAACATCAAGCAATATTTTCAACAATATTTTACACTCAAAATTTCTTATACTGAAAAATGCAAATTTACATATTGCTTTATAACAAATTCATTGACACAAATAGAAAATCTAACTATAATAATGGCACAGTAACCCAATAATTTATATACAGCGTTAGTCCATGGCTGACGCTGTTTTCTATACAGGTACCTTGTTAAGGATATGACCAGCTCTGCATCTGCTGCTGTTTTTTAGTCATAAACAGTCTCAGTTGAACTGCTGACATGCTGCGTGCTGCTGCATCAAACTGTGAAAAATAGTAAAATCAGCGCAGTATAGTTGAGCATTCCACATCGTACCTGACACAGGTTTTGCGTCTGGGCGCGGACAAATAAAACTGTTGGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGCGAGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2863296-2860822 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVT01000001.1 Blautia coccoides strain NCTC11035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2863295 32 100.0 34 ................................ GAAATAAGAGCTTCTTTTTTAGCGGCAACCGTTT 2863229 32 100.0 34 ................................ AAAAATTATTGATGTATCAGAACATAATGGAAGG 2863163 32 100.0 34 ................................ TTCAATCCCATGCCGGATCCCGTCCAGCACAAAC 2863097 32 100.0 34 ................................ GTAAAGGCAAAGAAAAATACTAAAGTACAGATAA 2863031 32 100.0 33 ................................ GCTGCAGATTGTTGAGGTGATGCTTATGTACCC 2862966 32 100.0 35 ................................ AAGATCGATACTATTCCGCCGACCCTGAGCATCAC 2862899 32 100.0 34 ................................ AGCATTATGCGAAAGATACCGTGTCAACGAAAAT 2862833 32 100.0 34 ................................ TCTTTGCAATCTCAATTATTGCCGCCTTCCAATC 2862767 32 100.0 33 ................................ CATTGAGATAAGGGAATCCAATGCCCCTTTCGG 2862702 32 100.0 34 ................................ TCCTGTGCTGAAAGATGCTCCACAGTTTCCGGTA 2862636 32 100.0 35 ................................ CAGTGCCTGACCCGAAGACAGGGAGCAGCCTGCGG 2862569 32 100.0 35 ................................ AACAACTGAGTCGTGTTTATTCTCCCACATTTTTT 2862502 32 100.0 34 ................................ TATTTTAGGCATTTCCGTGCCTTCTCTTTCGTCG 2862436 32 100.0 33 ................................ CCCTTATCCACTTTTAGGGCTATCTGGTCTGCG 2862371 32 100.0 34 ................................ CAATATATCATGAGCGGTTCGATGGATGAAATTG 2862305 32 100.0 33 ................................ TTCTATCGGTGATGTTGTTAATAAGGTTAAAGC 2862240 32 100.0 34 ................................ ACGGCACGGGGATTATCCATGCCGCCATCCCTGG 2862174 32 100.0 34 ................................ TCCGGTGCAATCCTCCTGCAGTTTTATGTCACTG 2862108 32 100.0 33 ................................ TGTTGCTGGTCCCCAGATTCCATCTATATCCAG 2862043 32 100.0 34 ................................ ACAAAAAGGCTGAACCTGCCGGAGAGAAGCGAAG 2861977 32 100.0 34 ................................ AAGAACCAGCGGACCATAGATAAGGACATCATCA 2861911 32 100.0 34 ................................ CGTACATAAAGGAGTTTGCGAATCTCCCGTATTT 2861845 32 100.0 34 ................................ ATGAGCGGAGATAAACAGCGGATAATGACATTTG 2861779 32 100.0 35 ................................ ACACTTTTGAGGTACTGCCGCATCTGATCTACCGA 2861712 32 100.0 34 ................................ ACCCTTACAAAGGATGTACCCGCCGGTGGAGTGA 2861646 32 100.0 35 ................................ GGGGATTACATTGGAAGCAGTTCTGGCGGCAGAAC 2861579 32 100.0 34 ................................ GCTGTCCCCATATCCTCCCGGAAACCGGAACACG 2861513 32 100.0 35 ................................ AGCAAGAACATGACCGAGGCAGCGAATAGTGCTAA 2861446 32 100.0 34 ................................ AACGGTCTGCCTGTATTTCTCCATATCCCTGTCC 2861380 32 100.0 33 ................................ TGCTGCATGTTGTTCAACCGCAGGTCAATCAGC 2861315 32 100.0 35 ................................ TCACCTTTGGCAATTATAAATGTCCAAGGAGCCAG 2861248 32 100.0 34 ................................ CGATGAGCCTTACCCTGCTGTTGGCCGGGATAGC 2861182 32 100.0 34 ................................ TTAATAACAAATCCCATCCCCCCAGCCAGTAGGC 2861116 32 100.0 35 ................................ TTCCATCCACTAAGTAGGCATAACCGGAATCGAAC 2861049 32 100.0 35 ................................ TGCAAAGACAAGTATAATTTTAAGAACGGCTTCAC 2860982 32 100.0 32 ................................ GCAAATGCAGCAATCTGTGTATAACTGCCTTT 2860918 31 93.8 34 ...............T..........-..... TATACTCATCGACAGGCAAGAATAGCAATCGTTA 2860853 32 84.4 0 ...T..G.......A..A.T............ | ========== ====== ====== ====== ================================ =================================== ================== 38 32 99.4 34 GTCGTCACCTTCGCGGTGACGTGGATTGAAAT # Left flank : GAAAGGATAACGCCGCCTAGAAAAAGAAAAAACAGGTGGTTCTTAAGTTCAGGCAAAAATACCGCAAAAGCTACTGCGCCGAAGCCATAAGCCGGACAATAAGGTCCGAACAGAAAACCAACGTCAATAAACCGATGTTCCCTGACTGCTGCAACTGACGTTCCAATAGCCCAGCCGATGAAGGAATAGAGTAAGAAAAACCATAGAAGTTGATATAGTGTGTAGTTCAAGTGAGGCCTCCTTTGGGGATGATGTTGGATAATGGTGGTTTTAGTATACCTTATACGCGGATGGAGGAGATGTCAAGTGTAAGAAGGCGGAGGTTTTTGTGCGAATCGGGAGTGAACAGGAATTTGCAGGGGAATTCGCACCTGATATTGAGGTGAAAAGAGGTGGGGGGAATGATGAAAAGAGGTGGAGAGTCGTGTTTTTAATTGTAAATAGTGGGAAGATGTGATATTATATACAAAAAGTGGTGGGGGTATTTAGGTATTTTTGCT # Right flank : TTAAGCTTCTCTTACTAAAGTAGGCTTTATTTCATTTTCGATTTTTATAAATGAAATTATATTTCTATCAATTCATTAACCGAATACTGTTTACGCTACAAAAGTTTTTCATCCACCCATACATTAAGTAATAATTTGCATTGACATACAACCAAATTTCCCGGCATACATTGTAAAAACAACGTTTCCGGGAGATTTTTCCTTGAAAAGTTATATAGAAGAACGTGCTATATCCATAGCCAACTACATCATTGAAAACAACGCAACTGTCCGTCAGACAGCCAGAGAGTTCAAGGTCAGTAAAAGCACGGTACACAAAGACGTTACAGAGCGTCTGCTGCAGCTTAATCCTTCACTGGCCAAGTGCGCCCGCAGGGTCCTTGACGTGAACAAGCAGGAACGTCATATCCGCGGTGGTATGGCTACCCGGGAAAAATATCTGCACAAGGTGCAAAAATAACGAAAGAGACTCTTGTTTTGAGGAAAATATGGGCGTATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCACCTTCGCGGTGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 4 4028342-4031399 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVT01000001.1 Blautia coccoides strain NCTC11035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================== ================== 4028342 32 100.0 35 ................................ GGCGTATATCTGTACAGTTATGCAGATACGGATGC 4028409 32 100.0 33 ................................ GGCATTCTTTTTCTTTTTGGCATATTACCATCC 4028474 32 100.0 33 ................................ ATGCCTATCTGTTTCAGCTCTCGTTCAGTCATA 4028539 32 100.0 34 ................................ GACTTGACGGTTCAGCAGGCGCTTGCGGATATCG 4028605 32 100.0 34 ................................ ATTCTATAGGCAGCTGATGATGATTATTAAGTAC 4028671 32 100.0 34 ................................ GGCCAATCCCTGCATAAAGTCCGGCATCCAGGAC 4028737 32 100.0 33 ................................ ATGAGGGAATGTTTTCTGGCCGTGGTCACGAAT 4028802 32 100.0 34 ................................ GCCCAGCGTTTCCTGGATGATTGAAATGTAATTG 4028868 32 100.0 34 ................................ AATCTGATCTTACCCATACCTTTCACCTATCCCT 4028934 32 100.0 35 ................................ GCAATGGAGTGGGGGAGACAGACACGCCACGTATC 4029001 32 100.0 36 ................................ AAGGCAGATAACAGAAGGGGCAGAAGAGAATGCCAG 4029069 32 100.0 34 ................................ ACCGTAATTTCCTATCACCACAGTGGTGAAAATA 4029135 32 100.0 34 ................................ GATGAGTATGGTGCGCCCTCAATGTCTCCTGCTA 4029201 32 100.0 35 ................................ GTGAGCATATTAAAGGTCTCTTCCCAATTGAGCGT 4029268 32 100.0 35 ................................ ATCTACCTCGTTGTAGGTGTAGGATATCCTGTCGC 4029335 32 100.0 34 ................................ ATAAGATCTTCGAGATAGAAGGCAATGTGGAACG 4029401 32 100.0 34 ................................ ATGTCTGATGAGTGTTACAAGATGGCTACGACAG 4029467 32 100.0 34 ................................ GATAATAAGGTGATGTCATGGAAAAAATGGAATT 4029533 32 100.0 33 ................................ ATACCGCGGAATCCTTATTTTCATGGTCACTTC 4029598 32 100.0 34 ................................ AAAATTGATAATTAAGTATTGACAATGCCACAGT 4029664 32 100.0 33 ................................ ATAACGAAAACCGTAAATTATGTGATCTGGACA 4029729 32 100.0 33 ................................ GTTAAAGGAAAGCTCTAAAGATTGGACTAGGCG 4029794 32 100.0 35 ................................ ATGAAAAGATGTACGGTGCCGGAACAGCAGCTTAG 4029861 32 100.0 34 ................................ ATGATGACATTTCAAAGTATGGAGATTTTAACTG 4029927 32 100.0 34 ................................ AATTTGCAGAGCAGGAGATGCGCGGTATTCCGAT 4029993 32 100.0 34 ................................ GCCTTGTCCTCTTCGTAGCTGTATATGATATCCC 4030059 32 100.0 35 ................................ GAAAACATGACAGAGGAAGAAGCCAAAGCCCTTAC 4030126 32 100.0 35 ................................ GAAATATCCGACCTGGACCCAGAATCGGAATTATA 4030193 32 100.0 34 ................................ CTTCGATTCTAGTAGTTAATCTGCCTGAAAGATC 4030259 32 100.0 34 ................................ AAAACACGCTCCTCAGCGATTAGTTAGATAAAAA 4030325 32 100.0 33 ................................ ACGATGTGGCTATACAGAGCTAAGACTTCGGGA 4030390 32 100.0 32 ................................ ACAACAACAACAGTTACAAATGCTTGCGAGGC 4030454 32 100.0 34 ................................ AATAATTTTGTACCATCTTCGTTATCGATACGTT 4030520 32 100.0 34 ................................ GAAGGTATATCGCATTTTGAGTCCACTCTCGCTC 4030586 32 100.0 35 ................................ TCTGTGTTCAATTCTGCATCTCCAAGTTTCTTCCG 4030653 32 100.0 34 ................................ AAAGGCGTATTTCCCATTGGTATTGTTGCCCAGG 4030719 32 100.0 34 ................................ GGAGAAACGCCGGAGGCGGAAGCCCAGCTCGCGC 4030785 32 100.0 34 ................................ GAGCGATGATGCGACTGCATACATATTCAAATTT 4030851 32 100.0 35 ................................ GTATTGTCATACACCAACCGCACAAAACTGGTGTC 4030918 32 100.0 35 ................................ GTGATAATGCTGTCATCATGACCAAGGCGCCGAGA 4030985 32 100.0 36 ................................ ATTTCCAGCTTGCTGCCGTATATGCCACCTGTGCCT 4031053 32 100.0 34 ................................ AACGAAGAGCCCATCTGCATTGGCCTCTTCTTGT 4031119 32 100.0 34 ................................ ATACGCCGCAGGCGGCACAACACAGATGCTGGAT 4031185 32 100.0 33 ................................ ATCAATAGAAGATCTCACAGCATATGAAAACGC 4031250 32 100.0 86 ................................ GCAATACTATAACCCTTTTCTGTATTTGCCAAGTTTTTACCTTCGCAATAGTGCATAATGAAGCCGTCGAAATTTAAGACTGAAGT 4031368 32 71.9 0 ..T......C.TA.AAA......A..A..... | ========== ====== ====== ====== ================================ ====================================================================================== ================== 46 32 99.4 35 GTCACCACCTTCGCGGTGGTGTGGATTGAAAT # Left flank : GATGAATACCCTCCGTTTTTTTGGAAGTAGGTGATATGATTGCTGGTTCTTATTACATATGATGTAAATACAGAAACAGATGCAGGAAAAAGAAGACTTAGAAAGGTTGCAAAACAGTGTGTTAATTATGGGCGAAGAGTGCAGAACTCAGTATTTGAGTGCATTCTTGATAATGCTCAATGCGTTTCTTTAAAAGCTATTTTAGAAGGAATTATTGATAAGGAGGTTGATAGTCTCAGATTTTATTACCTAGGAAATAACTATAAGACTAAAGTGGAACATTTTGGTGTGGATAGGGGAACTGCGGCTGATTCGACTTTGATTTTTTAGTGCGAATCCCAAGCTGACACAAAAATCTTGGGTCATTCGCACCTAAGAATGTGTCGAAAAGTAAATGGATTATATAACAACTGGTAGATGGTAATGATTTTATTATCATAATAATAAGAAAATTAGTATTTTTATACAAAAACATCAGAGGAAAATTAGATGTTTTTGCT # Right flank : TTATATTCAGTCAAGTGTTCCAGGCCGCATCAGTGAGTAGTAAAGTGAACCATAAGAAATATGACTAAGTGAATATGGTTTTTCAGAAAGGGGTGTGCATAAGAAATGAATGAAAATATTAAAAAGAAACTTCCCATTGGAATAGAGAGTTTTGATAAAATCCGAACAGAAGATTTTTATTATATTGATAAAACTGGGCTCATTAAAGAACTTCTATACAATTGGGGTGAAGTTAATCTTTTTACGCGCCCAAGACGTTTTGGAAAATCTCTTAACATGAGCATGCTGAAAAGTTTTTTTGAAATAAGCACCGATAAAGAGTATAAAAAAAATCTGTTTGGAGGGTTGGATATTTCAGATGAAAGAGATTTATGTAAGGCATATATGGGAGAATTCCCGGTTATTTCAATCAGTTTAAAAGGTGTAAACGGTACTGATTTTTCGGCTGCACGCTCTATGATGAGTTCAATCATTGGAAATGAAGCTTTGAGATTCTACTT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTTCGCGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCACCCTCGCGGTGGAGTGGATTGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 5939655-5940212 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVT01000001.1 Blautia coccoides strain NCTC11035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5939655 32 100.0 34 ................................ TGTATTTTCTACTTATACATGGAAAAAGATTGAG 5939721 32 100.0 33 ................................ CATATCCAGTATACACAGATAATAAATCAATAC 5939786 32 100.0 34 ................................ ATAAAATTCCCAGGCTTTTCGCGCGAGGCCGGCT 5939852 32 100.0 34 ................................ TGCCTTGCTTTCACAATATTATTTGCGACATCAC 5939918 32 100.0 34 ................................ TCTGATGCAGTTATAGCATTCTGCACAGAGATTC 5939984 32 100.0 35 ................................ AGCAAAAGCAGGAGGCGCAGAGGTATCAGACTCCG 5940051 32 100.0 33 ................................ ATTATTATCAATATAGCAGATGCAAAGATACTA 5940116 32 96.9 33 .......................G........ TTTGACGGATTTCACAAAGTTCTCAGGGGCCTT 5940181 32 84.4 0 ......A......C..T..G...G........ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.9 34 GTCTCTGGCTTTGTGCCGGAGTGAATTGAAAT # Left flank : TAACTTCTGTTAGGTTTCCGAGTTTTTCCACGGTTATCGTAGTCACGCTGCCGTTGGGTTTCCGAATCGTTTTTTGGACATAAAAGGATGCAGAATTTTTCGATTTGCTGACTGTAAGTTTCATGTTGCTCACCTCCTGCCCTTATTATATCATATATAGCCATAAATAGCTACAACTAAATGGATAAAATTTGACAAAAAAATACAGGCTTTATGCGGCCTGCAGGTGTTTTTCTTTTGTTCAGCTGTCAAACTTCCGAGTATCCTTTGGGGTGGGAATAGGAGAAAATGTTTCTGGAATAATTGAAGGGAGGGTGTTATAATAAAACAATACAGGGTAGTGCGAAAGGTAAGTGAACATAAATATATGGAGGGATTCGCACTGATAAAAGAATGGTTTGTGATTTGTTTTGGTAATGGGATTAGGGGATGTAAGTGGAAAATTGGATATTTTGTATAAAAATGGTGATTAATAATGGGAGTGTTTGGATAAAATTGCC # Right flank : TCTGCTGAAGCTGGGGAAAAACATTTTCAGCCAGGTCTCCAGCTTCGCACTGGAGTATAAGCACAAAAATCACTACAAGCACAAAACACAGGAGATACCCATATGATATACCTGGAAACAGAACGTCTCATCTTACGGGATTACACAGAGAACGATGCAGAAGAGTACAGCAGACTTATGGCTGATGATCAGGTGATGTATTATCTTCGGGATATTCAACACCATTCCAGAGAGGAATCGGAAGAGAATTTTAGAAATATCCTTCTGGATATGCGGGAGAAGGACAGGCAAAGATATTTTCTTCATATACAGAAAAAAGATACAGGAGAACAGATTGGAAGCATTGGTTATACGGTCACGGATACAACTCCGGCAGGAAAACTGGTGCATCTGGGATATTTTACATATCCGAAATACTGGGGTTGCGGTTATGTGACTGAGGCGCTTGAAAAGGTAATGGAATTTGCTTTTTCCCAGGATGGTGTATACCGCATCACCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTGGCTTTGTGCCGGAGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //