Array 1 20518-21888 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFYP01000060.1 Comamonas kerstersii strain J29 contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20518 29 100.0 32 ............................. CGCCGAAAATTGGCGGATTTACTTTTGACGCA 20579 29 100.0 32 ............................. CTTTCCCTTGGCGTTAATCTTCTTTCCAGATC 20640 29 100.0 32 ............................. CGCGAAAAGCGGGGCAATGATGGCCGCGCTCT 20701 29 100.0 32 ............................. ACTAGAAGTACGGCCCGGCTACCAGTTCAATG 20762 29 100.0 32 ............................. CCACCAGTCGCCGGCGTGCTGCCGCCGCCTCC 20823 29 100.0 32 ............................. CGTCAAAGTCCCCGGCGTCTTGCTGCAGCTCT 20884 29 96.6 32 ............................G TAGGCAAAGTGATAACGCGTTCAGCTTGTTCA 20945 29 100.0 32 ............................. CTGGCAACGTTGCAGCAGGCATACCCGCAGCT 21006 29 100.0 32 ............................. ACCTTGATAAAGGCCAGGAATGAGTTTGCAGC 21067 29 100.0 32 ............................. TTCGCCAGTCTCTTTGTCTGTAGCGCGGAAAG 21128 29 100.0 32 ............................. TGAATTTGGCAAGAACTACCCTGGCAACAGCC 21189 29 100.0 32 ............................. TATCTGGAAAACGAAGCATCTTGTTTCCATTA 21250 29 100.0 32 ............................. CCGAAGCGCAGCATGTTGGTGTCCGTGGCCTT 21311 29 100.0 32 ............................. TCACGGCAAGACTGCTCATTCCATACAAAGAA 21372 29 96.6 32 ............................G CATTCAAAGCGGAAACGCGATCATAGTAAACA 21433 29 100.0 32 ............................. CTCTGAAGGCCCTGAAAACACTGAAGCTTCAG 21494 29 100.0 32 ............................. GACTGCTCAGAGAAGGAAAACAAGCCATGGAC 21555 29 100.0 32 ............................. GAAAAACTGCTACGTCCATGATGTTGCGTGTA 21616 29 100.0 32 ............................. GAGCGACGCGCCAACGCGGCAGACGCGGTGCA 21677 29 100.0 32 ............................. TGCTCTTCGTAGTCGGGCAATACGTTTTGGCC 21738 29 100.0 32 ............................. CCCTGGGATTCTCTCGGCCCTGGCCGAACTGC 21799 29 100.0 32 ............................. TCGGCGCGATCTTCGCCGTGATCTCTTGTTCT 21860 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GGTTGCCCCGCACACGCGGGGATAGGCCC # Left flank : ACCGCCGCCAAGCGTGCAGAAACCACCGATGACAGCATTGACCGACTGGTGCGCCGCGAAGCCGCCACCGTGTTTCGCAAGCAGCAGGTCATCGCATCCATGATCGAGAGCATTCAGCGCGTTTTGCGCATGGAGGAAATTGCCAGTGGCGCTAGTGCTGACAGTGATTCGTGACATGCCCAGCCGTTTTCACGGCGTTCTGTCATCCACCATGCTGGAAATTGCACCCAACATCTTCGTCTCACCACGCATGAATCCAGGTGTACGCCAGCGTATCTGGCAAGTGATGACAGACTGGTACAGCGCCCAGCCCCAGGGCAGCGCTGTCATGGTCTGGCGAGATTTGAATGCCGTGGGCGGCATTGGCATCGCACATCTGGGCCAACCAAGCCGTGAACTGGTAGAGTCCGACGGTATGTGGCTGGTACGCTATTGTTCTTTAAAAACCGAGACATAGATTTCCAGCTTTTCTCTTGTAACTCAATGAGTTAGGTACAAGA # Right flank : | # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACACGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 35-1405 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFYP01000091.1 Comamonas kerstersii strain J29 contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35 29 100.0 32 ............................. AGCTCTACCTACTGCCTTACTCGCTTTCCAGT 96 29 100.0 32 ............................. GTGATAGCGGATAAGCTCATAAGATTTACCGC 157 29 96.6 32 ............................G TAGACGCGGACAAAACAAATTTCGCAAAGCTT 218 29 100.0 32 ............................. AGAGCGCCAGTAAGCAAGGTGTTTGCAAACAC 279 29 100.0 32 ............................. ACATGCGCAGTGCATACGGCAAGGCTCTGCAT 340 29 100.0 32 ............................. CCCAAAAAATTGGGGGCAGCCTGTTGCTGCAC 401 29 100.0 32 ............................. CCTCGATGCCAGCAAGACACGCCGACATCCAA 462 29 100.0 32 ............................. TCTCTGAATCTGGCTCGCAAGTATGGCGCGAA 523 29 100.0 32 ............................. CACGGGGGCTTTTCTAGCGCCCTCGCTGGACG 584 29 100.0 32 ............................. CAGTCTGACCAGCGATCAAGCCTGGAAACACA 645 29 100.0 32 ............................. ATGAAGGTATGGCCCAGGTCACGCACGTGCAG 706 29 100.0 32 ............................. GTAATCCGCCAGCGCACGCACCTCTTGGGTGG 767 29 100.0 32 ............................. AGACCATCGACATAGCGCGCGGCGTTCTAGTC 828 29 100.0 32 ............................. GCCGGCCAGTTTCATCAGTGAAGACTTCACGC 889 29 100.0 32 ............................. TTTTACGCCGGCCGCTACGGTGCCGGAGCTGT 950 29 100.0 32 ............................. TGGCCACTCCATCAACTCTGTAAGCATTGTTA 1011 29 100.0 32 ............................. ATGATAGACCCGTTGGACGCAAAAGCGCCAAC 1072 29 100.0 32 ............................. GAGGCGAAGGCGCTGGGAGCCAAGTGGGACAA 1133 29 100.0 32 ............................. TTGTCGGACTTACTGCCTTTGGCAAGCGTCTG 1194 29 100.0 32 ............................. TCGGCACCTGCCGGGTTAATTCGCATGGAACA 1255 29 96.6 32 ............................G TGATTGCGTGGCCATCACAACCGCGCAGTTTT 1316 29 100.0 32 ............................. GGGACGCTGCGCCATCAACATCGACAACATGG 1377 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GGTTGCCCCGCACACGCGGGGATAGGCCC # Left flank : CCTCGGCGCGATCTTCGCCGTGATCTCTTGTTCTG # Right flank : | # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACACGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 74353-73627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFYP01000019.1 Comamonas kerstersii strain J29 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================== ================== 74352 29 100.0 32 ............................. TTGCCCAAATGGTTTTAAAGGCACAGTAAACG 74291 29 100.0 32 ............................. GCCACCGGCCCAGTGCCAAATGAAGTCATACG 74230 29 100.0 32 ............................. TGGGACGGCGTGACCTGGGCAGACAGCGTGCA 74169 29 100.0 32 ............................. TAGGGCAGTAGTACCTGCAAAGATGGTTGAGC 74108 29 100.0 32 ............................. CCAAGTCATGAAAACACTGGTCACGGCAATTC 74047 29 100.0 59 ............................. AAGTGGCCCAAGTGGCCCAAGTGGCCCAAGTGGCCCAAGAAGCATTACACAGAGGCCCA 73959 29 100.0 32 ............................. GACCCGACATCCAGAAGCGCTACTGGAAAGGC 73898 29 96.6 32 ............................G CTCGCCGGGCACTTGACCGCATCATTGGCTAC 73837 29 100.0 32 ............................. TGCTCGGGCACCATCACGGCGTACTTCGAGAA 73776 29 96.6 32 ............................T GCAAGATGATGATTTTAAAAGTGTTTTTTGCG 73715 29 100.0 32 ............................. CGACCGCTGGAAAGACCGCAACACCGGCGAAA 73654 28 93.1 0 .........................-..A | ========== ====== ====== ====== ============================= =========================================================== ================== 12 29 98.9 35 GGTTGCCCCGCACACGCGGGGATAGGCCC # Left flank : CCGGGACGCTGCGCCATCAACATCGACAACATG # Right flank : GCCTCCCCCTCACTAGGCCCACATGCCCTGGGGGATGTAGTTTTTTGTTGTCTGCCGCTGGTTGCTCCCTCACGGTGCAGGAGAAGCAGCATCACGCGATCAAAGCGCCCCGAACAAAGAACGCTCCATCCCTGCACAATACCCGCTCAATAGCGACACTTACCGTCTTTTCAAGAGCTTTTAGCGAAAAATTTTCTTCGAAAAAAGTGCTTGAAATGCCCTGCGAGGTACACATCTGGGAAGCATGACAGCGCGGATAGCGCCACACAGACAAAGGAGTTTTCACATGTTTCTCGCAACCCCCATCATCCGTCACGTATCCCGTCCTGACGCTGCCCTGCAGCGCTTCATGCAGGCAGCCACCAATGCAGCGGTGCAGCAGCTCAATGGTGACTTCAGCTTTTCCAGCAATGAAGAGGCCACCATCCTGTCCGTAGACGTGCCCGGGCTGCGCCGCGATCAGCTGCAGCTGCGTCTGGAGGACAACATGGTGTATCTGC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACACGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 1-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFYP01000020.1 Comamonas kerstersii strain J29 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TCGGCACCTGCCGGGTTAATTCGCATGGAACA 62 29 96.6 32 ............................G TGATTGCGTGGCCATCACAACCGCGCAGTTTT 123 29 100.0 32 ............................. GGGACGCTGCGCCATCAACATCGACAACATGG 184 29 100.0 32 ............................. GCCACCGGCCCAGTGCCAAATGAAGTCATACG 245 29 100.0 32 ............................. CCACGGCGGCCATCGTGGGCCTGGGTGCCGCC 306 29 100.0 32 ............................. CAGTTACCGCATGCACAACATTGGCGGTTTGC 367 29 100.0 32 ............................. CCACCGAGGCGGCCAAGGTCGCCATTCACGCG 428 29 100.0 32 ............................. CGCGATCAAGGCCGCGACGGCACAACTGCTTA 489 29 100.0 32 ............................. AACCCCGGCCGGGAGAAAGCCGAGGCAGCGGC 550 29 100.0 32 ............................. GGAAGTCACGCGGAGACTCGCGTAGCAAGTCC 611 29 100.0 32 ............................. TCGGCACCTGCCGGGTTAATTCGCATGGAACA 672 29 96.6 32 ............................G TGATTGCGTGGCCATCACAACCGCGCAGTTTT 733 29 100.0 32 ............................. GGGACGCTGCGCCATCAACATCGACAACATGG 794 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GGTTGCCCCGCACACGCGGGGATAGGCCC # Left flank : | # Right flank : | # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACACGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //