Array 1 5320-6689 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZY01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C1030 NODE_22_length_81070_cov_76.360674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5320 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5381 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 5442 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 5503 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5564 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5625 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5686 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5747 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5808 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5869 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5930 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5991 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6052 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6113 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6174 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6235 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6296 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6357 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6418 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6479 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6540 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6601 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6662 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22822-23993 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZY01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C1030 NODE_22_length_81070_cov_76.360674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22822 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 22883 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 22945 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23006 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23067 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23128 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23189 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23250 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 23312 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 23415 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23476 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 23537 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 23598 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 23659 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 23720 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23781 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23842 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 23903 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23964 29 96.6 0 A............................ | A [23990] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //