Array 1 1768151-1765934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031133.1 Bifidobacterium longum subsp. longum strain BORI chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1768150 36 100.0 29 .................................... CAGTCGTTCCAGCATGTGCTTAGGTTTGG 1768085 36 100.0 28 .................................... CAAGTGGAACTTGTGTACTCACTGCATA 1768021 36 100.0 28 .................................... ATTGTAGCCGGGTCACGTATGCATTTAG 1767957 36 100.0 28 .................................... TATTCGTTGCCGATGATGTTGCGGAGCT 1767893 36 100.0 28 .................................... CGTGCCTATGCGTTGTTTGCCGCCTTCC 1767829 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 1767765 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 1767701 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 1767636 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 1767571 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 1767507 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 1767443 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 1767379 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 1767315 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 1767251 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 1767187 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 1767123 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 1767059 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 1766995 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1766931 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 1766867 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 1766803 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 1766739 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1766675 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 1766611 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1766546 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 1766482 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 1766418 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 1766354 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 1766290 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 1766225 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 1766161 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 1766097 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 1766033 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 1765969 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 35 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TCCTCGCCAAGGTCAACCCCAAAAACAGGGACTGGGCCGCCGACGCGCTGAAGGCCATATTCTCCATGGAATCGAGGGACAAGGCGCTGGAGAAGGCGGAATCCGTCGCCAAGGACATGGAGGCGCGGAAACTGAGGGAGGCCGCCAAATGCCTCAGGGAGGGCATCGGCGAGACCACGACCTACCTGCTCGACGACTACCCCCGCGAGCATCGCCGCCGCATCCGAACGAACAACATGATCGAACGGCTGAACCGCGAGATCCGCCGGCGCACGCGCGTGGTCGGCAGCTTCCCGGACGGGCGCAGCGCGTTGATGCTCATCTGCGCGAGAGTCCGCTACGTAACTTCCAGCGAGTGGTCGACGCGACGCTACCTCGACATGTCAAGGCTCGGTGAGAACGTACAGTCAGCGAACTGATCATCGCCACGGGGACGGGCGAAGACCAAAGTGCGCAAAAACTCGGGCACTACCTCAATTTGTGATAGTCAACAATGGCGC # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1965906-1966250 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031133.1 Bifidobacterium longum subsp. longum strain BORI chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 1965906 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 1965972 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [1965978] 1966056 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 1966116 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [1966164] 1966164 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 1966221 27 85.2 0 ..............C.....C....CG | GC,C [1966239,1966243] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCGCCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //