Array 1 43703-42545 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALRG01000016.1 Streptococcus agalactiae BSU178 ctg7180000002377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43702 36 100.0 30 .................................... TCACGATTTTGGGCAATCAATTGACGGAAA 43636 36 100.0 30 .................................... ACTATCCGCCGTGGTGTAGACAACCTCGCC 43570 36 100.0 30 .................................... TGACAGATGAAACAAAAAAAGTCTACCTAA 43504 36 100.0 30 .................................... ATGATATCATCGGCTTCATAATGTTCCAAT 43438 36 100.0 30 .................................... TTGACCTGTTTCATTCTCTGGAACTTGTTG 43372 36 100.0 30 .................................... AATTTGATTTTTTAGCATAGTATAGCTTGT 43306 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 43240 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 43174 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 43108 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 43042 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 42976 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 42910 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 42844 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 42778 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 42712 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 42646 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 42580 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //