Array 1 6173-7859 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCBA01000043.1 Listeria monocytogenes strain 52871 Contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6173 36 100.0 30 .................................... TCGACTTCCCTAACATCCTGCCAGGCGTAT 6239 36 100.0 30 .................................... TAAAAAGGCTGTTTTCGATTGATTTATGTT 6305 36 100.0 30 .................................... TGATGCCTGCTGACATCCCCGCCCCTGCCT 6371 36 100.0 30 .................................... AGTTTCTTATTGTGTATTTCTTGATACTCC 6437 36 100.0 30 .................................... CCAAATTTCAAAATACGTTATTTCCATCGA 6503 36 100.0 30 .................................... AATGAAAGAACAACAGATTGTAAAAGAATA 6569 36 100.0 30 .................................... AACGCCCGGAAAAAAATATTGCGTTCATCC 6635 36 100.0 30 .................................... GGAATCCGGAAACGATGAAAGAAGTCAATG 6701 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 6767 36 100.0 30 .................................... GCGGGAATTTTCATTAAGATACTCCACCTT 6833 36 100.0 30 .................................... TTTATCGCCGAAAGTTATTTGCGAGCTTTC 6899 36 100.0 30 .................................... TAATGTTAAACCAGACACGTCAACTAGACA 6965 36 100.0 30 .................................... CTTTATGCTCACTAAATATTTTTTTATCCT 7031 36 100.0 30 .................................... TTTAAATTATGTGGGTTTAATGAAAAAATT 7097 36 100.0 30 .................................... AAAGATGTTATTTGGGAGTCGACAACTTCG 7163 36 100.0 30 .................................... AAACAACAAGCAAATTCGTGCGACTATTGA 7229 36 100.0 30 .................................... AACAAAAAGCAAGTTTTCTCCGTTAAAATC 7295 36 100.0 30 .................................... TTCGTCATCACTTTCATCAGCTTTTAGTTT 7361 36 100.0 30 .................................... TAGTTAGAACCCTGCTCGACACCTGCGTTA 7427 36 100.0 30 .................................... GGGATTTTCCGTTTTTATATAAATAAGAGT 7493 36 100.0 30 .................................... ATTTAGCGCATACAGATCTTCTTTACAACG 7559 36 100.0 30 .................................... AATTGTAAGTTCCATTTCGTCAGGGGTCAG 7625 36 100.0 30 .................................... TACAAAGTGAAGGATGATGAAAATGGAGTT 7691 36 100.0 30 .................................... AATCAATTCAACTATAAGGATTTAATGTCC 7757 36 100.0 28 .................................... GAATATTCTTCCCCCATCACTAACAGGT 7821 36 83.3 0 ............CA.....C.....T.A.......G | A,A,C [7846,7852,7855] ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //