Array 1 1121223-1121860 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821240.1 Corynebacterium pacaense strain Marseille-P2417, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1121223 28 100.0 33 ............................ CGCCCGATACGGCTCACGGGAGGCGGGAATGAT 1121284 28 100.0 33 ............................ CTGCGCCTGCACCTCAGGGCTATTATTGTCGAT 1121345 28 100.0 33 ............................ CCACCGGACACGAATACCTCGGCACCCCCGACG 1121406 28 100.0 33 ............................ TATTACAGGCAGAAAGAAACCCACACAGACAGG 1121467 28 100.0 33 ............................ AACCAGCTCTCCATCTCCTGGACCAACACCGAA 1121528 28 100.0 33 ............................ GGCTTACTCCGCTGCGACAAAGATCGCTACCAC 1121589 28 100.0 33 ............................ GGGGTTGGGGGCTGAGCGGCGGAAGCAGTTGGA 1121650 28 100.0 33 ............................ CCAGATTGAGGCCATGCAAGATATGTGGACAGG 1121711 28 100.0 33 ............................ GTGCCCTGGAGAGGAATCGAACCTCCGGGGCAG 1121772 28 100.0 33 ............................ TCACACAGCCGCCGGCACCCTTCCACCGGATTT 1121833 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 ATCTGCCCCACGCGGGCACGGCGGGAAC # Left flank : GCCTCGATCGGGACCGTCGGCGATGCGTACGACAACGCGCTTATGGAGACGATCAACGGGCTCTACAAGGCCGAATGCGTGCGTACGACGATCTTCCACGACGGCCCCTACAAGACAATCGCAGACGTCGAGTTCGCGACCGCCGGATGGGTCGACTGGTACAACAACCGAAGGCTTCACGGTAGCCTTGGAATGGTCAGCCCCGACGAGTTCGAGGCGACCTACTACGCGGCCCTCACCGAGGAGTCGCTCCCCGCATAGAAGCGGCACAGAACCCGGGCCGGTTCATTCGTCGCTTCTCTGCGCAAGCGTGCCGCGTACCGGCAGTAGGCGTCATGTTTGTGTGGGGTGACCAGCAACTTTATTGGATCCGGTAAAGTGGTCGCCCCCTTTCACCCCGCAGCGGTGGCCCGTGTAGGCTACGTGCAACCCCCGGTGTCCCGTGTCTGCCCTAAACGGAGGGGGGCTTAAGATCCGCGTGGGTGACCTGGTGAACAAGT # Right flank : CTCACACAGCCGCGTCTGCGGTCAGGGCATGAGAAAACCCCTAACCAGAATCCGGTTAGGGGTAAAAGAGGGGTTCTTAGGCAGCTGCTGCGATGACTGGGGTAGCAGCAAGTATCTTCCTAGCCCGCTCCAGCTGCCAACCCTCCCACAGATTGGGGTCAAGGTAATACTCACTGAGTCGATCGAAGAACTCACGAGGCAACGGGCTAACTTGACGTCGTAGTTCGCCAAGAACAGCCATTGAACCATCATCGGGTTCACCACATACGAACGGAAGTATGCAATCTAACGGCTTAGAATCGAGATGGGAAAACAATTCCGCTTCAACCGGGTCAGTGACGTTCATTTCGCGGAGGATAGCTACAGCGGTCCACATCGTTTCCATCCTTTCTAAGCTTAAGGTAACTGTCTAGTATAGCTGGGTTAAGTGAATCAGTCTTTTATCTGCTCCACGCATGCACGGCGGGAACGGTGGGATAGTGCGCGCTACTAAAAGTGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCACGCGGGCACGGCGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 319714-314803 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821239.1 Corynebacterium pacaense strain Marseille-P2417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 319713 29 96.6 32 ............................G ACGGCGACACCCTCGCCGCCGGCAACACCGCC 319652 29 96.6 32 ............................G CAGCATGACGGCCAGGTGACTGTGGTCGTCGA 319591 29 96.6 32 ............................G TCGAGGAAGTCAACAACCGAGCGCGGATATGG 319530 29 100.0 32 ............................. GAGTACAACAGCTGCTCAAGATGCTTCTCGAA 319469 29 100.0 32 ............................. AAAATGTTATGCAAGTGGTGACACGTGTTTCA 319408 29 100.0 32 ............................. CCACAGCAGGGCAACCAGCAGCGCGGCGGTTT 319347 29 96.6 32 ............................T CGCACCCCTCCTGCACTGTGATCTGGGAGGCC 319286 29 100.0 32 ............................. CGCCGCAGCCCGCTCCCGCACCGATGCGCACC 319225 29 96.6 32 ............................T GGGAATGAGTAGTCATGGCGCAGGGAGATACC 319164 29 96.6 32 ............................G CCACCCAGCCTCGTCGCAACGGGTACATGTAC 319103 29 96.6 32 ............................G GGCGGCGCGTACGCGCTGGCTGAAACGCAGGC 319042 29 96.6 32 ............................A GACACCGAAAACCGCGAGCCGTCATCCGACCA 318981 29 96.6 32 ............................T ATCATTTTGGAGCAGCACCCGACCCTCGGAGC 318920 29 100.0 32 ............................. GCGTCTTCGCGACGACGGCAGCTTTACCGACG 318859 29 100.0 32 ............................. CCGGGCGGAGCCGGGGTCACTGTCGATGACGG 318798 29 100.0 32 ............................. ACAAGTAGTCAAACAGAATCTTTCAGGCCCGC 318737 29 100.0 32 ............................. CTGCGCGTGTGGAACCACGACTACACGGACTC 318676 29 100.0 32 ............................. ACGCGCCGATGTCCGATTCACCTCATCAATAA 318615 29 100.0 32 ............................. CCGAACTGCTCATAATTTTTCAATCACTACAC 318554 29 100.0 32 ............................. GGAGGATACCGACTACCGACATCCGGCCCTGG 318493 29 96.6 32 ............................G AAGGCGATTCTGCAGGCGCCCACGAAGGCGAC 318432 29 96.6 32 ............................G GTGGACACCTACCTTGCAGGCCAGCTTGTCGC 318371 29 96.6 33 ............................G TCGTGGGCCGAGGCTCAGGGTACGACGCGAATG 318309 29 100.0 32 ............................. TCGCCGCGATTTATGCAGGCAAGGCCGGTGGT 318248 29 96.6 32 ............................G GGCTCAGATTTGTCGAATGATCCTGATGGTGA 318187 29 100.0 32 ............................. CAGGGGTGAGGGGCAGTGTCCCGGAAGGACAG 318126 29 100.0 32 ............................. TGAGGAGATGGATGCGTATATGCAGACCGTGA 318065 29 100.0 32 ............................. TGTTGCCCACCAGCCCTGAACTTGCTGAGGTT 318004 29 100.0 32 ............................. GTTCGATACCGGGCTGACGGGTCCGTAGCGGA 317943 29 100.0 32 ............................. GCGACCTGCACCTGAGCATCCTTAATCATCGG 317882 29 100.0 33 ............................. TATTGCGTTGTGCTGCGCAAATTGAGGCAATTC 317820 29 96.6 32 ............................T GTACACGGGGCAGACGAAAACCCGCCGTTCTG 317759 29 96.6 32 ............................G CGGATGCAGGGGCGTGTCGTGGCGATGAGGAG 317698 29 96.6 32 ............................G CCGCGGAGCTGATTGCGGAGCACATCACCCGC 317637 29 96.6 32 ............................T GTGTGCAGGCGCAGGCGCATGCGATGGGAGTG 317576 29 100.0 32 ............................. GGCGGCAACTACAACAGTGGCTCGGGGGAGGT 317515 29 100.0 32 ............................. GTGAAGATGGTTGTTCGGTGGTACGGCCCCGC 317454 29 96.6 32 ............................G ACCCTTGCCGATATGACCCCCGAGGAGCGCGC 317393 29 100.0 32 ............................. CCCTGCCATCCCAGCGATGCGTAGCCACGACC 317332 29 96.6 32 ............................T GTGTGCAGGCGCAGGCGCATGTGATGGGAGTG 317271 29 100.0 32 ............................. TACTAGCAAACGCCAAAATCGCCCCCACCCTC 317210 29 96.6 32 ............................A CCAAAGGTGGACACGCGCCGACAGCTGGACAT 317149 29 96.6 32 ............................G TTTTCCCGTCGCGGACTTCTTCGAGATATGCG 317088 29 96.6 32 ............................G CAACAAGACGAGCTTGCGGCCGGGGGTAAGGA 317027 29 96.6 32 ............................T GCCCCTCACCCCTGGTTTCCCGCCCGGGTGAG 316966 29 96.6 32 ............................T GCTCCAGCGTTGCCCCGACCCCTGGGCGCGCC 316905 29 100.0 32 ............................. CCCGGCCTTCTCGCTGCGCTGGAGAATGTGGT 316844 29 100.0 32 ............................. CCCCGCCATCCCAGCGATCCGTAGCCACGACC 316783 29 96.6 32 ............................G TCAGGTCGATGATCAATGAGTACAGCCCGCGG 316722 29 96.6 32 ............................T GTCCTCGCCGGTGGCGGCTTCCTCGCCATTAG 316661 29 100.0 32 ............................. GGTTGCTTATCGAATATCACGGTGTTCCTCTC 316600 29 100.0 32 ............................. CAGCCCACCCGATCGTGAGCAGGCGCGGAATC 316539 29 96.6 32 ............................G GAGCTTCCCCCGGAATGGGCGATCTTAAACTG 316478 29 100.0 32 ............................. TGTCCGCGTCCGCAGGATCGCTCACGCTCACC 316417 29 96.6 32 ............................G GCCCGCATCATTCTCGCTCGCGGGCTGGGTGA 316356 29 96.6 32 ............................T TGTCGTGGGCTCGGGCGCGCCCAGGGGTCGGG 316295 29 100.0 32 ............................. CCGGCGCGAGAACGCACCTGTGGGGGTTGGCT 316234 29 100.0 32 ............................. CTCCGCGATGTCCCGCTCCTCACGCGCCGGCA 316173 29 96.6 32 ............................T GTCCTCGCGGGTGGGGGGTTCCTCGCTATTAG 316112 29 96.6 32 ............................G AGGCGATCGGCGGCGCGGGGACATTCTCCGAC 316051 29 96.6 32 ............................G GTGGGATGCGCATACCGGAATCACGCACAAAA 315990 29 100.0 32 ............................. ACCAGCTCCAAGACAGGAGAGAATCATGAAGA 315929 29 100.0 32 ............................. TATTAACACCAGCAGCACTAGCCTGAAAGGGG 315868 29 100.0 32 ............................. TGGTATGGCATTCCGGGTATCGGATACGAGTA 315807 29 100.0 32 ............................. CAGCCCACCGCCACCGCGCTCCCTCACATGCG 315746 29 96.6 32 ............................G ATCGAGAACGCCACGAAGAAGGCCACAAAGTC 315685 29 100.0 32 ............................. ATTGGGGCTGGTGGGTTGCCCGTATTTGCGGA 315624 29 100.0 32 ............................. TCGTGGGTGAGCTCGTGGTGGACGCGGCGGGT 315563 29 96.6 32 ............................G GTGATACAGGCGCTGCTGGTGCTGTCGGCCCG 315502 29 96.6 32 ............................G CTCAGTCGCTCGGCGATGTCGATTACTTCGGC 315441 29 100.0 32 ............................. AAGTCCAAGGACGAACTCATCGCTCTCGTCGG 315380 29 100.0 32 ............................. TCTCCTTTCTCAAAATGGTGGGGTCATGTCAA 315319 29 100.0 32 ............................. TCTCCTTTCTCAAAATGGTGGGGTCATGTCAA 315258 29 96.6 32 ............................G GACTACGTGCGCGGGGCAGGCATCGAGGTCGA 315197 29 100.0 32 ............................. AGCAGCCCTCGCCTCACCAGCAGAAGCCCTGG 315136 29 100.0 32 ............................. CAGGCACGACTCCCCGAGGGTATCCGCTCGAC 315075 29 96.6 32 ............................T GTTACAAACATGAACTACATGTTTTGGAACTG 315014 29 96.6 32 ............................G CACTATCACGACGCCGGTGGCCCACGTGGGGG 314953 29 100.0 32 ............................. TGCCCCAGCTTGTCGAGGGATTCGGCGATCGT 314892 29 93.1 32 .......T....................G GAGAAGCACGCTCACGCTGAGACGCGCACCGC 314831 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 98.3 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : ATGAATGTCCGTGCTTGCGGCTGGGACTGCTCTGTGGCGATCGCGACCTCGGAGCGGTCGGCTTCTGTCTTGTCGTAACCCTCGGGGATGCCGACCTTGTCCGACCACATCTGACCGGGGATGATCTCATCTTGCGGTGGGCCGGAGGCCTCTGCCTGCTGGATCTTGTCCTGGATCTCAGCGATTTCAGCCTCCGTGAGACCGCCGACACCATCAACGACTGGGGGATTATTCACATCGTATTGGAACTCTGAGACATAGGTGTCACGGTCCTCCGGGGCAATAATCCGTTCCGATTGCGCGGTAGCCACCGGGGATAGCAAGCCCACAGCGATTAGGGTCGATGCGAGCGCACCGACCAGTTTTCTTCGAAACACCTAAAGCACTCCTTGCGAAAGCATTAATATTATTTTTCTGACTATAACCTGCTAGAAAGTTGAAAGTGACATGTATGTTTCGATCAGGAAATAGCCCACCCCCAGACGGGTGACACCTTGTGG # Right flank : ACACCTCCCAGATCCAGGCCCACGCCCGCTCCAGTTCTATCCTGCTCCATGAAGACAGTACGGAGAAGGGGCAATTCGCGCCCGACCAGCATCCTCACTTCCCATAGCAGGATGCCGCGTCATTTCTGGGGAATACCGAGCAAAAGTGCGGCGACCACGATCACCAGGCCCAGAAGTGCGATCACCCACTGAGTTCTGCGGGTCCTTGCTCGGACAAGTGGCCAGGCGAGCAGTGCGCCGGCGATGAGTCCACCCACGTGTCCCCACAGTGAGACATTCACCGCGAGGAAGGTGTAGCCGAGGTTGACTGCGATCAGTGCCAAAGGCGCCCTCAGATCCCCGCCCCGGACGGCAAACAATCCGACGAGGATCGACATCATCGCGTATATTGCGCCCGAGGCGCCGGCTGTCGGTGAAAGGGGATCGAACCACACCACCGCCGCGGAGGCTCCGATCCCACCGACGAAGTAGATCAGGGTGAACAGCCAGGCGCCGAAGAA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 331777-322960 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821239.1 Corynebacterium pacaense strain Marseille-P2417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 331776 29 96.6 32 ............................G GGTTCATCGCCGACCGACTCCCCGCCCCCGTC 331715 29 96.6 32 ............................G ACCGGTGACGCGATCAAGGAATTTTCGATCCG 331654 29 100.0 32 ............................. AACAAATTTCACTATTCAGAACTCACATATCG 331593 29 96.6 32 ............................G CGCCACCCCGACACCCCCCCAGCTACACCGAC 331532 29 96.6 32 ............................T GTTCGGCTGGTAACCGAACTGATTTCCATTGA 331471 29 96.6 32 ............................G ATCCGCGATCGCCTGCCAATGCTTATGCGCCG 331410 29 96.6 33 ............................T CCTCCATGGACAGGCCGGCATCCTGCGCCCGCT 331348 29 100.0 32 ............................. CTCCCCCTCAGTGCGTCGCGACGCACCATCCA 331287 29 100.0 32 ............................. ATTCGACGCTAAGCCCAGATCAATAAGTCGCT 331226 29 96.6 32 ............................G GTCCTGCGTGATCCGCTGGATGAGGGCTTCAA 331165 29 100.0 32 ............................. GCTGCATCAGGGTCACCACCCGCGGCCCGCGC 331104 29 100.0 32 ............................. CAGCCTCCAGCAGCACGTGCCTGCGTCTTACG 331043 29 100.0 32 ............................. GTCGCCTCCGAGAATCCCCTGTACAAGGGTTA 330982 29 100.0 32 ............................. AGCTCCGGCACTTCCAGAATGTCAGCGACAGG 330921 29 100.0 32 ............................. CCAAAGTCACCGACTTACCTGCCACCGATTCA 330860 29 100.0 33 ............................. TGCCCTCAATGCCCCTCACCACTGAGTCACCGC 330798 29 100.0 32 ............................. AGCCTCCGGGGCGGACGCGGCGAGGAGGGCGT 330737 29 100.0 32 ............................. CGCAACATCAGCCTTGTCCCGGGCGAGCTTGA 330676 29 96.6 32 ............................G TACACCGTCTCTGAGCTGATGGCCGACCCTGC 330615 29 96.6 32 ............................G TGGGTAGCTAGCTGCGCAAATGTGTAGTGATT 330554 29 100.0 32 ............................. CGCCCGATCAAGGACGCCGAGTTCGATGACAT 330493 29 100.0 32 ............................. CATCAGGCCCCGCCTCGTCGTGTGGGAAAACG 330432 29 100.0 32 ............................. GACATGCTGAGTCGCCACGTCCTGCACCCACT 330371 29 96.6 32 ............................T CACCGGCCATGTTCTTCCCGTGGTACCCACTA 330310 29 96.6 32 ............................G GCGACAGAGAAGTACGACAAGATGATTGAGGA 330249 29 96.6 32 ............................G CACTTCGCGACCTTAGGCATCGATGGCTCCGA 330188 29 96.6 32 ............................G GCGTCTGCGGGGTCGGAGAAGGTGTCCGACGC 330127 29 100.0 32 ............................. TGATTCTGCATCGACACCCGCGACTGGACCAG 330066 29 100.0 32 ............................. CGGTGTGCGCCGATAGTGCCGAGGAATGCCCA 330005 29 100.0 32 ............................. GCCATGAAGTCGTCCGCCAGCTGCGAAGCGGT 329944 29 96.6 32 ............................G GGTGACCGGGTTGTGACCTTCGGCAGGCTGCA 329883 29 96.6 32 ............................G ATGGACACCGACGGGAAGATCCTGACGGTGGG 329822 29 96.6 33 ............................A GCTCGCGCGCCCGGAGCCGGTGCTGACCCCGGC 329760 29 100.0 32 ............................. AACCTTGCCAACCGCTACTTACCCGGTGGCAC 329699 29 100.0 32 ............................. GGTGAATCCGAGTTCGTGCACCGCGCCAGCGT 329638 29 100.0 32 ............................. CGCGACGGCTGGGACGACGAGCCCCTCCCCGC 329577 29 100.0 32 ............................. CATCCCTGCTTCAGGAGCAAGAGATGCACCGT 329516 29 96.6 32 ............................G CCCGGTGAGCTTAATGTCATTTACTCGGGCGT 329455 29 100.0 32 ............................. CCGCGCACCATATTCAAATGCGTGTATGCATC 329394 29 96.6 32 ............................G GCGAGGCAAGGCAAGGCAAGGGAAAACCCTGG 329333 29 96.6 32 ............................G GGTAAGCAGGCCCGCCAGTATTTCATCGCCTG 329272 29 96.6 32 ............................G CAGTACGCGGCGAAGAGCGGGCCGAAAGGCAG 329211 29 100.0 32 ............................. GTACAGATGCCGTGAGACATCGGGTGCCCCCG 329150 29 96.6 32 ............................G GTCACGCCGATCCAGGTATCTTCTCCGTCCTC 329089 29 93.1 32 .....................G......G AGCGGCCTGGACCTCCTCCGTGGAATCCACCA 329028 29 96.6 32 ............................G GGCTGCCGCCACGGACTGGCAGGCCCAGGATG 328967 29 100.0 32 ............................. TCATCCCACGCGGCGATGAGATTTTCCTTCGT 328906 29 100.0 32 ............................. TGCCTGCACGCGGGCCATCGCGAGATCACGCT 328845 29 96.6 32 ............................G GTCACCTCCCAGTGCGGGTTATTCACCGATGA 328784 29 100.0 32 ............................. GTTCGCCGCGGTGCGGGGCATACGGCTGCGGG 328723 29 96.6 32 ............................A AGCCCGGCGCGATCCGCATCGACTATGACCTT 328662 29 96.6 32 ............................T GCATGGCCGAGCTCGTGGGCGATGCAGGAGCG 328601 29 96.6 32 ............................G GCCACTGCGGGGTCAGAGAAGGTCACCGACGC 328540 29 96.6 33 ............................A GGGAACATCAATTGAATCACATACGCCCGGGGA 328478 29 100.0 32 ............................. CCCTGCCATACCTGCGATGCGTAGCCACGACC 328417 29 100.0 32 ............................. TTAGTTCGCCCCGTCGTCGGTGAGATCTCCAC 328356 29 100.0 32 ............................. GTGGCGTCTGATTCTGCGGTCGCGTTCGGCAA 328295 29 96.6 31 ............................T CGTACGCTGACGCTCTCGGCACGAGCACGGG 328235 29 96.6 32 ............................G GTTTCATCGCTACCCGGGCCTTTGGGGTCTGT 328174 29 100.0 32 ............................. TAGATGCGCTGGCGTCGAATCAGATCGCGGTG 328113 29 100.0 32 ............................. GTCGCCGCGACCAATGCCTGAGGCTCGCCCTT 328052 29 100.0 32 ............................. CCCGATCGCGGCGGCGAGCTGCGATTCCGTGA 327991 29 96.6 32 ............................G GCGCCGGCATCATCGACCTGGACGACAACATT 327930 29 96.6 32 ............................G GTGCTTCTCGAAAGACACCCGGCCCAAATGCG 327869 29 96.6 32 ............................A CCTCTGACAGCTGCTGCTTCGGTGGCAGCGAG 327808 29 96.6 32 ............................G TCTTGAGTCTCCTGGTGCCGGCGGCGGTGATC 327747 29 96.6 32 .........A................... CCCCACGCCCACAGGATCACCATCCCCGCAAC 327686 29 96.6 32 ............................G GCCCAGGAGTTCGCAGGCACCGCATTCGAAGT 327625 29 100.0 32 ............................. CTGCTTATAGCCAGCGCGTCCGCTGGGGCCTA 327564 29 100.0 32 ............................. GCCACCGCCAGCGGCGGCGCATCCGCGTTGGC 327503 29 96.6 32 ............................G TCACTCTGGGGCGTGCGTGGAACCCCGGTAGT 327442 29 100.0 32 ............................. AGGCCCGGTGGCGGTGGCATGAGAGATGCCAT 327381 29 96.6 32 ............................G GACACCTGGTCCCTCATCGACAAGCGACGGAT 327320 29 96.6 32 ............................T CAAAGCATCCTTGAACACGGCGATCTGATCCA 327259 29 96.6 32 ............................T GAGCGTAGGGTCAGCGAGCAAATCGCTGACAG 327198 29 100.0 32 ............................. AAGACTTTTGAGCGGTCCGCGGAGGAAACCGC 327137 29 96.6 32 ............................G GCGGGCACGCCTGAGCTGCAGGCTTCAGCACC 327076 29 96.6 32 ............................G TGGGATTAGACAATTTTCATTCTCCTTTAGTA 327015 29 100.0 32 ............................. TTCCCCACTGCACCCGCAGCAGTCGCCAAAGC 326954 29 96.6 32 ............................G CGCCAGCACAGTTTTTACGTACTTACCGGACC 326893 29 96.6 32 ............................T GAGGCTGCGAAGCGTGGGCGATCGTTCGCGGA 326832 29 96.6 32 ............................G TTGACCTCCGCGTTCCGCCCTGGTAGTGGGTA 326771 29 100.0 32 ............................. TTCATCCTGCATCGCAGCCGGTACCTGCTGCA 326710 29 96.6 32 ............................T GATGGTCTCCTCAAGGCGATCAACGCGGTCAC 326649 29 96.6 32 ............................G TCACTCTGGGGCGTGCGTGGAACCCCGGTAGT 326588 29 96.6 32 ............................A TCCGAAGTGCCATGCCCGATCTCGGCGCGGGG 326527 29 100.0 32 ............................. AGAAAATCCACGACGCCGGAATCTTTACTCAG 326466 29 100.0 32 ............................. CTTCCCAGAATGACGACGACCCAGAACCTTCC 326405 29 100.0 32 ............................. TGGTAGGCGGTCAGCTCAATGAGAAGTGCCAT 326344 29 100.0 32 ............................. CTTGCGAGATCCCACTCCTCAAGGAAGGTGAG 326283 29 96.6 32 ............................G GAACTCGAGGAGGCGATGAATTCGTCCGTCGA 326222 29 96.6 32 ............................G GTACGACAGGGCAGCTGGTGTCTCCGCGTGAT 326161 29 96.6 32 ............................G GCGTGTGGGAGGTTTTCAAATCTCTGTGGGAT 326100 29 96.6 32 ............................G CTTCGTCAGCGCCTGCGGGTGCAGCAAAATAG 326039 29 96.6 32 ............................G CGCATGGGATATGGCGATGAGTACCTGGATGC 325978 29 96.6 32 ............................T GCGGAAACACGAGTGCCCGGTTATCCTCCGAC 325917 29 96.6 33 ............................G CATGGAGCTCATACCGGAAGAGTCAGTCTCTAC 325855 29 96.6 32 ............................G GTGGTGGTGTTGATGGCAGCGCTATCGGACTC 325794 29 96.6 32 ............................T CAGCCCGGCGTTGACGAGGTTGGCCAGTGCTT 325733 29 96.6 32 ............................G GCAACAGTCTCCGATCTGGGGCGGGCGGTTCC 325672 29 96.6 32 ............................G GGCGACTCCGAGCACCACCTCGGCGTCAGCAG 325611 29 100.0 32 ............................. TTTGCGAGATCCCACTCCTCAAGGAAGGTGAG 325550 29 100.0 32 ............................. TTTGCGTCTTCGACTCGGCCAGAGCAGTATCC 325489 29 100.0 32 ............................. GGATCATCGCCCTCACCCGGCGACCACTCCTT 325428 29 96.6 32 ............................G CTGGCACCACGGTGGCCGGGGACAATCACGCG 325367 29 96.6 32 ............................T CAGCTGGGTCATTACGGCCCCTTTCTGTGTGA 325306 29 96.6 32 ............................T CGGGCTGACGACACTCTCCCAAAGCCATGTTA 325245 29 96.6 32 ............................G ACCGGGCCTGTCCTCACCGTGTGCACGGATTT 325184 29 96.6 32 ............................G ACGCCCACAAAACCACCCTTCCCTAGTAGTCA 325123 29 96.6 32 ............................G AACAGATCCTCGACAAATGCCCCGTCCAGATT 325062 29 96.6 32 ............................G GTTGATCAGGTGCGTAAGGGCATCCAGCAGCT 325001 29 100.0 32 ............................. CGAGGTACTCATCACCCGGAAGAAGGCGCGCG 324940 29 96.6 32 ............................G GGGCTGGCCATGCAGGCCAAGCACGGCGCACT 324879 29 100.0 32 ............................. ACCGGGTTTCCGCTCTGACACGCTGCCTCTGT 324818 29 100.0 32 ............................. GTGTTGTTTGTTTTCAGGACGGCGGCCAGCAA 324757 29 100.0 32 ............................. AACCGTGCGGTGCCTCCTCGATGTGCCAGCGG 324696 29 96.6 32 ............................G GCGATCAACGCGGTCACTGGCTTCATTGGTAT 324635 29 100.0 32 ............................. CCCTTCTCAGCACCTTCAAGGTTCCGGGCCTG 324574 29 96.6 32 ............................T TCCCGCACCGGCGCAGTCAACCGCCCAATATT 324513 29 100.0 32 ............................. TCGCTCGGTGCTGTACACCCCAGCCTGGGCCG 324452 29 96.6 32 ............................G TCTTCGATCTTCGGCTCCTCCGCTTCGACTTC 324391 29 96.6 32 ............................A AGGTCGCGGCCAGCAGATAGGAGATGATTTCG 324330 29 96.6 32 ............................G GCAATCAACGCGGTCACTGGCTTTATTGGTAT 324269 29 100.0 32 ............................. GCCTGGAACCTTTGCCCTAGATCGGTGAGCAT 324208 29 96.6 32 ............................T GAATCAATCGTCACTGCGTCGCCTGTCACATT 324147 29 96.6 32 ............................G CGGGGGGGCTGGGATCTGCGTTTGAAGGCGCA 324086 29 100.0 32 ............................. ACAGCCGTCTAAGCCCGCACTCCTGGTCAACA 324025 29 100.0 32 ............................. CCCACTTGCGCCCTGACTTGTCCATGTAGAAT 323964 29 100.0 32 ............................. CCGAAGGGCACGATCCCCCGCGCCGAGATCGG 323903 29 96.6 32 ............................G GATGCTCTGAGCCTGGCGGCGTCGACTACTGA 323842 29 100.0 32 ............................. CCCCAACACAGACAACCACCTGATACACTCGA 323781 29 96.6 32 ............................G ACACCCTGCCCGCATGCGGAGCGACCGGCTTA 323720 29 96.6 32 ............................G TTCAGGGGACGAAACCGGAATCTCACCAAATT 323659 29 96.6 32 ............................G ATAATCCAACGCCGCGACCTGCTGCGCAATAA 323598 29 100.0 32 ............................. GTCAGGACAATAAGCTGGCAACGATTTATGCG 323537 29 100.0 32 ............................. CTCGATGGTAAGGGCGGCGCGTACGCGCTGGC 323476 29 96.6 32 ............................G GTGACTGTCAGCTATGGGCCGCGGACGGAGGC 323415 29 96.6 32 ............................G TTCAACTGGCCCGTGAAGCAGGTAGGCGTGTC 323354 29 96.6 32 ............................G TCGGAGGTGGCGACATTGAATGCGCTGCTCAA 323293 29 96.6 32 ............................G ACCTGTCGCAAATCGTGCGAGTCCGGCCATCG 323232 29 100.0 32 ............................. GGCGGCCCGTGGGGTGGGCATACCTCCGGCAC 323171 29 100.0 32 ............................. CCGCCCTTAGCCAGCTCGGCCATCGCGGCGGC 323110 29 100.0 32 ............................. GGGTTTGTGTGGACCGGCAGGGTGGATGATTT 323049 29 96.6 32 ............................T CTGATCAACGCCCAAATCCTCGACAGGTGTGC 322988 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 145 29 98.0 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : ATTTTGGGCCGACGTCGTCCAGCTCTGGGACGGTGGAGATAAACGCGTCGCAGGCGGCACCAACTACGATGGCTCCGGCACGACGGGGCACGAAACTCCATGATCACTGTCATTCTGTCCTCGCCACCCGAAAAGTTGAGGGGACACCTCACCCGCTGGCTCCTGGAGGTAAGCCCGGGAGTCTACGTAGGGCGACCAACCGCCAGAGTGAGGGATGAACTCTGGGAGTTGATCGTTTCGACGCTGACGAGCGGTCGGGCGATTATGACCTTCCCAACCAGGAGCAACGAGCAGGGTTTTGAAATCCGGGTGCACCGGAGTCAGTGGGAAGTTGCTGACTTCGACGGCATCTCTCTAATGCGACACCCGGTTAGCACTGCCAAAGGGTCGATGAAAGCCGGTTGGTCATCCGCCTCCAGGCAGCGAGCAGCACGTCGACGTAATAAAGCAAAGTGATGTAAAATCAGCGTTGGACCGAGCTTTATCGCTGGTTAACTAGT # Right flank : TACGGTCGTTCCTGGGTGGATGAGGCCGAGCAGGTCGACACGGATCTGATTCTCGATGACGGCGGCAGGCTCTGGAACAGCACTCTAGCAACCCCGGTCATGCCACCTACCTCGGACTCTCGGGCGAGCCCGTGGGGCGACTGTCGGTGCAGCGGGTCTATAAACACGTCATCAAAGCCCGTCTCTATCGAGGCGATCAGCAATGGAGCGAGGTCCAGCACTTTCATCCGCGCGACGTGCGCTTCGACGGCTGGAACCCATCCGCCTGGCAGAACACCATTGATTATGACAGCGAGGCCGTCAGTGACGACGAGTCCAGGAATGACGACGTCGACCAAGACGAGACTGCCACGATCGTGGCCACGAACCAGCGAGAAGATAGTGCTACCCATCGGGGACCGTGCGTCTCGTATCTCCGGGTCTCGACCGCGGAGTAGAACCTCGCCCGGCAGCGCGAGATGATCGGGCAGGACTCGAAGACTGCATCGGCTTCCTGCGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 747038-747250 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT821239.1 Corynebacterium pacaense strain Marseille-P2417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 747038 31 80.6 30 ...C.................CAG...TC.. TAGGTCAAGATCTTGATCTAAAGAAGGATC 747099 31 100.0 30 ............................... AGGTCGGGACTCCGACCTAAAGCTCCGCGC 747160 31 80.6 30 .....................C.G.TC..CG AGGCTCACTTAGCGGAAGATCTTCCGCTAA 747221 30 67.7 0 ................T.-..AA.C.TAACA | ========== ====== ====== ====== =============================== ============================== ================== 4 31 82.2 30 GTCTGCCCCTCGCGGGCACGGGCAGGAGTTT # Left flank : GCTCCAAGATCACCGTGCAGCGCGGGAACGCCCGGTGCTTCCGCGTCCCAACCAACGCGACGATCACCGCCGGTGCTCTCCTGCAGGTCGGGGCCAATGGTCAACCCGAACCCGCCACCGACGGGCGTGTCATCGCACAAGCCCTGTTCAACAGCGCCGATGGTCACATCGACCTCACCTTGATCTAACCCCGGTGCTGTAGCCGCGTTAAGCTCAGCTCACCGTTCGGTTTCTCCACTTCTTTCAAGCGGTGAAGCAGGTAAGGGCACCAGCCGCACATGACAATGAGGGCTTCGCACCTCGCCGGTCCCTGCGTCGCTACAGCACCGAGATCCCCCGCCTCAGCTCCTACTGGGACGGGGGATCATCCATGTCTCGACCCCCCGCCTGTTTTCCTGAGGGGGTTGTCCGCCTCACCCCGACCCGTTCGCTGGCATGAGGGAGTCTCTCTCTCCGGTGGTTTGGGCCCTTAGGACTTCGTTCAGAAAAATCTGATCGGG # Right flank : AACTGGAACGGAGTGTTACGGCTATGTCTTATCTGTAACAGCGACAGGTTAGTGTGACATCTATGTCATATCCGTAACAGAACTAAGGTAGTGTTACAGATATGAGTGTATGCGAGAAGTGTGGAAAAGAGTTCGAGGGACGGGCAGGCGCAAAGTACTGTTCATCGGTGTGCAGACAGGCTGCGTATCGTCAGCGGAAGGATCCGCGGCCACCAGTTCGCCGTGTTCCACTTCGTGACATCGCTTTGCGCTCAAGGTTTGAACTGGACCGTAGTGTCCGCAGGATTCAACGGGTCGCCCAGGATGATCGGTTTATGAAGATGGTGCGGAAAGACCCGGGTCTGCTCAGGGGTGATCTTCAGCGGTCTGTTGATGAGTTGCAGGCTGTTATCGCGGAGATTGACCGCATACGAGGATGAGCACCTGCCCCGGTGACTGGCACGGACGGGTGACTACATTTTGACTACATGTGACTTGAATCGAGCACTATTCACCAGACG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.11, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCTCGCGGGCACGGGCAGGAGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTGCCCTTCGCGGGCACGGTAGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //