Array 1 20673-18880 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIF01000100.1 Mycobacterium persicum strain AFPC-000227 NODE_100_length_20675_cov_9.93985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 20672 38 100.0 34 ...................................... GAAACAACCTGGTAGTAGTCGATGGGCATAATAA 20600 38 100.0 35 ...................................... AGTGGCAGCGGGTGCGTAACGGGAAACCATCGGAC 20527 38 97.4 35 A..................................... CAGCCCGGAGCTAATAAGGCTTATACGATAACGTC 20454 38 100.0 36 ...................................... TGACATTCACCCTGTGTCAGCTGCGCAAACGGTGCG 20380 38 100.0 35 ...................................... CAGTCGTCGGCGCGCGGTCGAGATCCGGGCGCGTA 20307 38 100.0 36 ...................................... TCATTAATCTCCAACGACACCGGGCCTGCCGAATTA 20233 38 97.4 35 ..............................G....... TACCCACCGCAGGGCGGATCTCCGCGCGAGGCTAA 20160 38 100.0 37 ...................................... ATGTGATTCTGGATATGGGGAAGCCCCGACCTTTTGA 20085 38 100.0 34 ...................................... CGCAGGAGTGGAAGGACGGGCGGCGTTGGTTGGC 20013 38 100.0 35 ...................................... TAGGGTCCGCGGCGCTGATCAACTGCGCCCAGATC 19940 38 94.7 34 T....A................................ GTACGCGCGCGCGGTCCCAGATGTCGCTGTCTAA 19868 38 97.4 35 T..................................... CGCAAGCACCGCCTAGTCGCCACTACGATGCCCGT 19795 38 97.4 35 .....T................................ AACAACTCTGGGACGTACAGCGTGCCAGGATGGAT 19722 38 100.0 36 ...................................... CTTGCTATCGCGCCGGGCTCCTATGAGCTGCGCCGA 19648 38 97.4 35 C..................................... TGTCAGGGTGCCACTTATGGCGAACCCCGTCTCGT 19575 38 100.0 35 ...................................... CTAGCTTTGGAGCCGCAGCGGCGCCGCGCGGCGCT 19502 38 97.4 35 C..................................... AGCAACGACTCGTCGACCAATGGGACGCCCCGTCG 19429 38 97.4 37 C..................................... TCCGCCGGTAGGTCCTCTATAAGCTCACCACCCAAGC 19354 38 100.0 33 ...................................... CTGAACCATTACAACTACGAGCGCCCGCATGCG 19283 38 100.0 33 ...................................... ACCGACGCGAGTAGCCGACCCGTCGAGTTGCCT 19212 38 100.0 37 ...................................... TGCCGGTGCTTGCCGACCCACGCAAGATCCTCGTCGC 19137 38 100.0 35 ...................................... CTTTCAGGCGGCGATGCGGAGTAGGTCGATGATGG 19064 38 97.4 35 A..................................... TTTTGACCCGAGTGTCCAGCGATACCGCACACGGC 18991 38 100.0 36 ...................................... ATCCGCGAAGCCGACCTGGCCGCCACACCGACCCAC 18917 38 86.8 0 C.....A..........T......T............T | ========== ====== ====== ====== ====================================== ===================================== ================== 25 38 98.4 35 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : GG # Right flank : CGACCCCACGGCTCACACCATCGACAAGGTTGTCAAGCGTTGGATGACTTTCTGCGGCGCCGATGATTCGAAAGATCAGGCTCGACAAATGACCCTAGTGGTGTGTCACGCAAATAGTTAACTGCATGTTCGGTATTCTGGATCGGTGAGCGCCTCACCTGCAGTTGCTTTGGCCATGTCGGTTGGCGAGCGTGAAACGTTGGAGAGGTTGGCGCGGTCTGATTCGGTGCCGCATCGGCAGGTGATGCGCGCGCGTGCGTTGCTGATGGCTGCTGACGGCGTGGCGAACACCCGCATCGCTGAGGAGGTGGGGGTGACACCGGTGACGGTGCGTAGCTGGCGCAAAAGGTTCAGCGAGGACGGGCTGGCCAAGCTGGGACAGGTACGTAGGGGACGCGGCCGCAAAGCCACGATCTCAGACGCGCAGGTCGCTGAGATCGCGCGATTGACCACCGAGGAGACCCCGCCCGGCCACACGCATTGGTCATGCCGCACGATGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-184 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIF01000358.1 Mycobacterium persicum strain AFPC-000227 NODE_358_length_245_cov_1.30952, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 1 38 97.4 36 ...........................T.......... CGGCCCCGCGGATTCGCACCCCACTCGGGTGGCGGT 75 38 100.0 34 ...................................... CTCCCAATAACCAGCTCCCCCAAGGCTACTGGAC 147 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 99.1 36 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : | # Right flank : GAAACAAACTGGTAGTAGTCGATGGGCATAAGAAGGCGGCGCCCGGCGTTGCTCGGCGGCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1020-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIF01000083.1 Mycobacterium persicum strain AFPC-000227 NODE_83_length_25752_cov_9.8606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1019 38 100.0 34 ...................................... GTTGACTCCTCGTCAATCTCGCCGTCGCTTCCGA 947 38 97.4 37 A..................................... CGCAGGCCGGGGTCCTCGTGGTGCAGGGGCCAGCCCC 872 38 100.0 35 ...................................... AGCGGTGAGACACGCGACGGCTGGAATGTAGCCGA 799 38 100.0 36 ...................................... CGGCCCCCCGGCCAGTCCTCCCCGTGTGTGCGTTGC 725 38 100.0 35 ...................................... TTTAGATGGCGCTTGGCCGGTGGGTTAGAGTAGAC 652 38 97.4 33 A..................................... ATATCGTTTTTCCGCGATGTGGTCGGCCTCGAA 581 38 97.4 38 T..................................... TTTCATTTTGCGGCTCCGTTCTGGGCGGCGAGAAACGC 505 38 100.0 36 ...................................... GGAGACCAGGCGAATCTCTCGTGCCGATACTGCGGT 431 38 100.0 35 ...................................... GATGCCCGCACCGGGCATGCGTGCGCGACAGGTCA 358 38 97.4 36 A..................................... GCCTGGCAAACCCGCCTCGATGATCTGATCGACCGC 284 38 97.4 36 T..................................... GCGGTGAATAGCATCGGCCAGCGACGAGGTTATCCC 210 38 100.0 35 ...................................... CTCATTGAGCAGCGCGACCTAGACCGATGGGTCGC 137 38 97.4 34 C..................................... ATTAATGCGTTTTTTAATGGCCGTGGCTATACCT 65 38 97.4 0 C..................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 14 38 98.7 35 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : ACTTCAGGCGCTTCTTCTGGCACGGCACCTTCGCGGCGATCTGACGCATTATTTCCCATATAGAACGACAGGGCGGTGAGATGGAGATACTAGTGGCCTATGACATCAGCACGGCGTCACCTGACGGGGAGCGTCGTCTTCGCGGGATAGCGAAGGTTTGCGAGGGGTACGGTCAGCGTGTCCAAAAGTCAGTTTTCGAATGTCAGCTGGAAATGCGCGAAGTCCGCCTGCTGATAAATGACGTTGAGAAGGTTATCGACCCGAAATCCGATCGGGTAGCCGTCTATAGACTGCGTGAGCCGTACCGTCGCTACGTGGTGACCCTTGGCCGTGGGCCAGAGGTCGACTGGCGGCACCCAGTCATTTTGTGAAGGGGCGGACCCGGGTTAGACGTGCGACCCGTAGTAGATCCGCCCGAGGATTCGGGCTCCCAAAGCGCAGAACGGTTTGTTGATAAGTTGATGATTGTCGCGGTCGCCGAAAAATAGCTGTTCGCGAAG # Right flank : CCAGATACCCAACTATCCGGTCCACCAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4105-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIF01000183.1 Mycobacterium persicum strain AFPC-000227 NODE_183_length_4150_cov_7.47704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 4104 38 100.0 36 ...................................... TCCGCCGCCGACGGCAAAAACAAGTCCGCCCAACCC 4030 38 100.0 35 ...................................... GATACCGGTGCGGGGTTGGCGGCGTTGTCGAAAGA 3957 38 100.0 35 ...................................... CCGTTGGGGGAATTGCTCGCCTCCGCAGACTCCTT 3884 38 100.0 35 ...................................... CAATGGTTCGTCGGGCGCGATCGGCGAATCACCCC 3811 38 97.4 36 C..................................... AACGGTGGTGCGACTCAGACGGCGCAGTCCGGCTAT 3737 38 100.0 35 ...................................... ATCACTGATCAGCCGCTGATTGTGTGGTCCGCGCA 3664 38 97.4 36 T..................................... GACCATGCCAGCGTCACGGCATCGCATCCAGCCGCG 3590 38 97.4 36 C..................................... CTGCTTCATCCCTGCATCAGCGGCGTCGATCGCCAT 3516 38 100.0 34 ...................................... GCTGCTGGTGTGGTCGTTGTAAATGGCGGTGAGG 3444 38 100.0 37 ...................................... GAGGTCGTGCCACAGGATGAAACGCGCGCCTGGCTCC 3369 38 100.0 34 ...................................... TGCATGGGCGGCCGAAGACCGGTGAGGTGTGGGG 3297 38 100.0 37 ...................................... ACCATCAGGTGATTCGCCTTGCACGGTTACCGATTCG 3222 38 100.0 34 ...................................... TTCTAAGGACGCGTTGATATCTTTAAACTGCGTC 3150 38 100.0 34 ...................................... CCGAACATGTCCGATGGTTTCCCATTACGCACCC 3078 38 100.0 34 ...................................... ATGCCCAATTTGCGCGCACCACATAGCTATTCGC 3006 38 94.7 34 T.................G................... CTTTACCTATTGTCTACTGCGTACAGTAGTAGTA 2934 38 97.4 35 C..................................... TCCTGGCGTTGGGCCGATTCTGTATTGATTCGAGC 2861 38 97.4 35 A..................................... ACGCAAGAAGATCGCGGCCAAGAATATATCAGCCG 2788 38 100.0 34 ...................................... TGGTACGAGGATGACGTTGTCTACGAGGCCGTCA 2716 38 97.4 36 C..................................... GATGATGGCGGGCAACGGATTTCGCCCGCCATCATC 2642 38 97.4 36 A..................................... CTTGGATTCGTTCGCGGATGCTGTTGCGGACGCCCT 2568 38 97.4 36 C..................................... TTGGCTTTGGAGCCGCAGCGGCGCCGCGCGGCGCTC 2494 38 97.4 37 A..................................... ACCGTGGCATCGTGCGCCATGAACGCCCCGCGCGTCC 2419 38 100.0 36 ...................................... TTGGCTTTGGAGCCGCAGCGGCGCCGCGCGGCGCGC 2345 38 94.7 37 A..............................G...... CCCGTGGCAGCGTGCGCCATGAACGCCCCGCGCGTCC 2270 38 100.0 36 ...................................... TTGGCTTTGGAGCCGCAGCGGCGCCGCGCGGCGCTC 2196 38 97.4 36 A..................................... AGCGTCGGGCCCGCCCAGCCAAGGCCGAGCACGGCG 2122 38 100.0 37 ...................................... AGCCAAAGGTAGAACTCTTTGGTCTTATGTGGGTAGA 2047 38 100.0 36 ...................................... CACGCTATCGGCGTCACCCAGAGGCAGATCGAAACC 1973 38 94.7 35 CT.................................... GGGCTACTAGTGCCAACCGACTGCCGGACCGCAAC 1900 38 97.4 36 A..................................... ATGAGTTGACGTCTCTACAGACGGCTGTGGCCGTGA 1826 38 97.4 36 C..................................... CGCGTCGGGCCCGCCCAGCCAAGGCCGAGCACGGCG 1752 38 100.0 37 ...................................... AGCCAAAGGTAGAACTCTTTGGTCTTATGTGGGTAGA 1677 38 100.0 36 ...................................... CACGCTATCGGCGTCACCCAGAGGCAGATCGAAACC 1603 38 94.7 35 CT.................................... GGGCTACTAGTGCCAACCGACTGCCGGACCGCAAC 1530 38 97.4 36 A..................................... ATGAGTTGACGTCTCTACAGACGGCTGTGGCCGTGA 1456 38 97.4 36 C..................................... AGCGTCGGGCCCGCCCAGCCAAGGCCGAGCACGGCG 1382 38 100.0 36 ...................................... GGTCTCAGCCGCAGTGAGCCGCGCCTCAGCGGCCCC 1308 38 100.0 34 ...................................... GCCTGGTTCGCGGCGAAGGGGCCTGCCGCTGCCT 1236 38 100.0 35 ...................................... TGCAACGCGGCGATCGCATCCAGGCAGCCCTGCTC 1163 38 94.7 37 A...........T......................... CCCCGAACCGGACGAGCTGCTCCGAGACCTCGCTGGC 1088 38 100.0 34 ...................................... TGAGTACGCGCAACTAGCGCGAGCGACCTAAATC 1016 38 97.4 36 A..................................... ACTGACAGCAGCGCAGCAAGTGGCGCTAGGCGAGAG 942 38 100.0 35 ...................................... TTCAGGCCGTGGACCGCAGGGTCGAGCACCGCGAC 869 38 97.4 36 C..................................... CCGAAAGCTTCACCCCGACCGAACATGGCACCTATC 795 38 97.4 35 A..................................... GTCACGAACAGGACCAACCGGAGAAGCCGAAGAAA 722 38 100.0 35 ...................................... GCCAGGTGATCGGCGTACGGGTCGCCATCCTCGAC 649 38 97.4 35 A..................................... ACCGACTTGCGCACCGCCACCCAGGCGATCGTGCA 576 38 100.0 35 ...................................... ATAGGTCGGCGCCGGTGCGCGGCACTTACGCCGGC 503 38 97.4 35 T..................................... AAGTTGCGCGCATCTGATCCAATGTGGTACGAGGA 430 38 94.7 34 C.................G................... CAACCCTGAGAAGGGATCGTCCGCCTCGCCTCCA 358 38 100.0 34 ...................................... CTGAGGGGGCAGCTATGCCTGGTGTGTGCTGGGC 286 38 97.4 35 C..................................... CATGAAATTCTCTACCGCCTTGGCCGCTTCTGTCC 213 38 97.4 35 T..................................... CACGGCGGAGTACACGGCGGAGCCCACGGCGGAGT 140 38 94.7 37 T..........C.......................... GCTCCGGTGGACAGACGTCAGAGATGGGGCCGCGCCC 65 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 56 38 98.4 35 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : GATCGGAACGATGTCAATTTCGCCGAGGGCGAATCGACGTATTAT # Right flank : CCGGCCCCGCGGATTCGCACCCCACTCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //