Array 1 585602-585124 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGK01000003.1 Nocardia macrotermitis strain RB20 NRB20_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 585601 36 100.0 38 .................................... CCAGCAGCGCGGACCCGCCCACGCGCCGAAGTTCACCA 585527 36 100.0 38 .................................... GCTGTCAGGGCAGCGATGTATTTGTCGGGGCGCACCAG 585453 36 97.2 37 ..............T..................... CTCGACGATCATGGACGAGTCTCGGACCGCTCAGCAG 585380 36 97.2 35 ................................G... TCGTCGGGAACGTGGTAGTCGTCCTGCACCTCCAC 585309 36 97.2 38 ................A................... ATCGGCACCTTCCGCCCACGCAGCAGGTTCGTCACCGC 585235 36 100.0 39 .................................... ACGAGCCATGCTTTCTGGAGCAGCAACTGCACCGATAAT A [585211] 585159 36 91.7 0 ...............A..........G.......A. | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 97.6 38 GCCGCAGGCCCTCACCGGCCTGCACTTCATCGAGGC # Left flank : CTTCCGTTCGAAGATCGGGCCGAGACCGGCCTGGGCCATGGCGAGTTCGTGTTGGGTGGGTCGCCGTGGGTCCGCGCTGGTCAGATCACCGAGTATCGGCAGCCGTCCGGCCGGATGCGGCAGCTCAGTCAGGGGGCACGCTGCGGGGACGTCCATAGCCTAAGGCTCTCATAGCCGACCCGGTGTCTCATGCCAAGATGCCCCAGAAGTGCGAGTCGTTGCCTCACGTGATTTCGCCGCATCACTCAATCAGCGTCGGTCCTCCTGTAACGCCGTGTCCTTCGCCACCGTGCGCTCACATGGATCCCACATCCCTCGTACGCCCGCGAGAGCTCCATCATGCACCAAACCCCGGCGAGCCCTCGCGGCCTATTTCCGCAATTCACAGCCCTCCACGCCGGCAACGAGCCCCCGACCACACCCCCTCACCGGCGTGTCGCACAACAGCGCTCGCGGCGGCGTACATTGTCCCTGGTGAAAGGGGATAAAATCGGGACCCT # Right flank : CTCACAAGCCGAGGGTTGCTGCAACCGGCAGCTCTCCAGCAAGCAGCCAGGTCAACGGCCCGCCCATGGCGACTCGCCGCCACACAGGCATTTTTCATGAGTGAATGCGGATGATTGCTTTCACCGCCGCGCCCATGGTTAACTGAAAAAGCGCTGGGCGGCCTTTCCCCAGTGGCGTCGCTAATTCCACAAGATCCAGGTACGTATCCCGTACTCATGCGATCGGAACTCGACTGCCACAGGAAAGGCCGCTTTGTCATGTCACCTGCATCTGTCGTTACTCCCTCCATCGCCTGCGGCGATGAAAACCCATACCACTGGGCGATTCTCAGGGCCGACGGTAACCGCGTACACGAATGCCGCACGGCCGCACAGTCTTCGAAGCTCATCGACCAGTCAAGCCAACAAGCCGGGCGGTCAGGTACGCACCAGGCCGTGGGCGGTGCGGATGCCCGCTGGTTCAATGCTGAGCGCGTCGACGCGACTCCTGACGCGGTCGG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAGGCCCTCACCGGCCTGCACTTCATCGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 142-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGK01000033.1 Nocardia macrotermitis strain RB20 NRB20_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142 29 96.6 32 ............................C TGCTGCTGGCAATCCTTTTCGTGCAGAGCCCA 203 29 100.0 31 ............................. TCGTGTAGGAGGTGGGGGTGCGGTATACCAG 263 27 86.2 32 ..........--...A...A......... CGCGGTGCGCGCACTACCGCCGCGACTGTCAC 322 27 93.1 0 ...........................-- | CTC [335] Deletion [349] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTCGGCCCCGCACGCGCGGGGATGTTCCT # Left flank : CGTCACCGCCCAGGCCACGAGCTCCGGGCATCGACACGACAAGCAAGGGGAAACGGGAACTTCTACCTGGCCACCAGCGGGGACCTACAACCGGCCACCAGTGGAGACTTTCTCATGGCCACGGACACCCCAAGTCTCCAAG # Right flank : CCGAAGTGGTCGTAGCAGTCGTTCTGAAACGCATTGGAGGGCCAGCCGGATTCCTCTGCTGCGGGTTCGTAGGCGGAGGTTGTGCATCGACCGAGGTCTCGGAGGGAACGGAACCTCGCAACCGAGATGTCTGTAAGTGCCCGAATGTGCCCTGGGTGTTGACCTGGTGATGCCGCACATCGGCGGGCTTTGCTCGATGCGTGAGTGTGGGCTCGCATCGGTTCGGGTTGTGGTGGGGACAGTCCGGCAATATTCGGAGCTCTGGTCACAGCAGGGAGTCACTGGTGGTCTCCAAGCACGCCTCGGGGCTGTCTGACGCGCGCCTGCCTGCGAGCTGAAATGCCAAGGACGACAGAAGGATTGAGTGAATGACTGCAATTTCTCGGCGAGCGTTGGGGCGCCGTCTGCGTATCCTTCGTGAGGGAGTCGGTGTGAGCCAATCAGCCGCTGCCAGAGCGGTGTTCATCTCCCCGCAGTCCATCGGAAGACTCGAAAAGGGC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16180-15410 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGK01000036.1 Nocardia macrotermitis strain RB20 NRB20_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16179 36 83.3 39 .....G.........A.....C.G.........A.C GTGTTGTGGGCGCGGGCTGCAACTGCCGCCGCTGTATCG 16104 35 77.8 37 .....G......C..A..C.....G..-......CC CGGTCATCATCTTGGTGACGTAGTCGGCGGTGGCGGT 16032 36 88.9 36 .....G.........A.....A...A.......... GGCGATGCCGTTCCACAAGGCGACGATACCGTCGTT 15960 36 97.2 37 ...............A.................... TCGCTGAAAGATATTCGCGCCGAACAGGATTCATTGC 15887 36 100.0 40 .................................... TGCGGGTGCGGCTCGGTGGCACGTCCACGATGATGTCGTC 15811 36 100.0 36 .................................... GTGCGATCAGATCCGTGGCACCGGCCCTTACGACGA 15739 36 100.0 35 .................................... CGGTGAGCGCGTAGCCGTTGACGTTCAAAACGTCG 15668 36 100.0 35 .................................... GGAAGGACCTGCGGGTACGGCGGTCAGCCCGGCGG 15597 36 100.0 40 .................................... CTCCGCTCGACTATGCGCGTGTACGCGCTTAAGCCTCAGA 15521 36 100.0 40 .................................... CACCGCCCTCGGAGCCCAGCACCCACCCGCACGGGTCCCA 15445 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 95.2 38 GCCTCAATGAAGTGCGGGTCCGGAAGGACCTGCGGG # Left flank : GGATGCGCATTGCGTTGGTGACCTCGGGAACGCGCCGGACCGGTGTCGCCTTGAATTCGACGACTTTCAACCCGTCGGGCGCGTCCTCGACGACGTCAGCACGACCGACGACGCCGAGCTGATCGCTGGAGATGTCGACGGCATTCAGTTTGCCGAGTCGGGATCTCGTTGCGTCATCGACCGTCCGGTGGGCGTTCATTCCGGCGTGACCTGTCAGGCGGCCATCTGGTGGGTATCGGTTTGCTCCCCGGCTGCTTCGAGCCAAGCGCGGCGGGGACAGAAGATGTGGTGTGCGACAAGACTGATCGGGATCGGATCCATTCGCTTCCCCTTGCTTTACGGCCCCGACCGAACTATTGCAGCATGGTCGAGGCCGAGCATGTTGGCGTTTGCCGACAGTTGGCCCGATGTCTACCGCGAACACATGTCACATGACAGTCGACGTATAAATCGCCACCGCGATTTATACCCGTTGCTCCGTTGTCGCGCGGCACACGCTG # Right flank : AGGGTCCGTATTTTATCGTCTTTTACCAGGAGAAATGCACGCCGCCGCGAGCGCTCTTCTGCGACACGCCGGTGAGAGAGCGCTGTCGCGGGTTCGTTACTGGGGTGGATGGTCGCGACCTGCGGAAATAGGTCGCGAGGGCTCGCCGGGGTTTTCGTACACGATGGAGCTCTCGCGGGGTGTACGGACATGTGCGGGTGTGATGGATCCATCGTTGCCGGTGGGTTGGGGGATGGTTGTCGCGGTCGACCGATGGATCGTGTTGTTGGTCTATGGGGATCGACGAGGTGGTCGTGAGGTGCGGTCCAGTCTGTAACGGGCGGACTTGTCGGTGGTATTGGCTACTGTGCTGTGCGCGTCGTTGGTCGGCGCTACGGACGGTGTGTCCGGTTGTAGCAGAGGAGGTTTCATGGCGAAGTTGTCTTATCAGGATCTGCTGTCGGCGTGTTTGCCGGGTGGGGCTGCGGTGCTGACGTCGGTGACGGAGTTGGCTCCGGCTG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGTGCGGGTCCGGAAGGACCTGCGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 18493-19343 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGK01000036.1 Nocardia macrotermitis strain RB20 NRB20_36, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 18493 36 100.0 34 .................................... TCCCGTTCCACGGCCGGAACCCGTACCCGAAGGT 18563 36 100.0 39 .................................... CTCACCTGGTCGAGGCTGCCGTCTGGCCGATAGTGGGCG 18638 36 100.0 38 .................................... GCCTGATACTTCGCCAGGTCGGCGGAATCGATGAACAT 18712 36 100.0 44 .................................... GGTAAGGCGCTGAGCCCGCTGGTGCACCAGGATCAGCGCCTCAA 18792 36 100.0 39 .................................... CTCTGCGGCAAACCAGGAGCCGACACCGTCGACCATGTG 18867 36 100.0 40 .................................... CGCGGCGACGCGGTTTCCGGGTCGGCGGTAATTCACCAAC 18943 36 100.0 35 .................................... GAACACGATCAACGGCACGGCGAATGCCACAACCA 19014 36 100.0 36 .................................... TCGATCCCGTCGATGTGCTCCAAGTCCGGCACGAGC 19086 36 100.0 39 .................................... TTCGAGGGGGCCATGTGCTCACTCTCCGATCAAGGCAAC 19161 36 100.0 38 .................................... GTCCATTCGCACTGGTGGACGAAATCGGGGTGCCACTT 19235 36 100.0 37 .................................... GGGGCAAGCCAACGAAGTTGGCGCGGCAGCTCCACCC 19308 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 12 36 100.0 38 GCCGCAGGTCCTCCGGGACCTGCACTTCATTGAGGC # Left flank : ACGACATCCCCGACGACCGCCGCCGCGACCGCTTGGCGAAATGCCTTCAGCGACACGGCGACAGAGTCCAATACAGCGTGTTCGTCATCGATGCCAGCCCCGCCCGACTACTCCGACTCGAAACCGAAATCCACGACATCGCACTGATCACCGAAGACTCCGTACTCATCTGCGACCTCGGCATATCAAAATCAGTGGAAGACAGCCGATTCCGAACACTCGGCCGATCCCGCCGCATCACTCCATCGGGGTCGGTCATCCTGTAACGCCGCACCTTCTCCCGAGCATCGCTCGCCTGGCGCTCACATGCCACGTATGTACGCCCGCGAGAGCTCCATCATGCACCAAAACCCCGGCGAGCCCTCGCGGACTATTTCCACAGGTCACAGCCTTACAGGCGGATACTCGGCCCGCCGATACCCCCTTCACCGGCGTGTCGCACAACAGCGCTCGCGAACGCACGCATTCGTCCTGGTAAATGCGTATAAAATCAGGACCCT # Right flank : GCGGCATGCTCCGCCATATGTCAATGGCCATATGGAAGTCGCCGTTGGTGGCCAAGTGAGGTATCCACTGGTGGCCAGGGAAAGTCCCCACCCTCTTGCGGGTGGGGGTCGTTATTTCAGGGGCGGTCACCTCGCTTGGTCCGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAGGTCCTCCGGGACCTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 4320-5044 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGK01000013.1 Nocardia macrotermitis strain RB20 NRB20_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================== ================== 4320 28 79.3 120 ..-..G.....T.G.........C.G... GAACTCGGACTGACTGCGGTGTCGTCTGACAGTGTGAAGAGACAGTCCGAAGTAAGCCTGGCCCGATACCAAGTGATGAAAAATGGCTACTCTGAGCGATAGCGTTGCAGGTCAGCAAGT 4468 29 100.0 32 ............................. ACAGCCGCGACCATCTATCTCGTTGCGACACA 4529 29 100.0 32 ............................. CCCCTTCAAAACTGGGACCCGCGAACAAAAAC 4590 29 96.6 32 ............................G AGCTGACGGTCCGCGAAGATGTTGACTCGGTG 4651 29 96.6 32 .....................G....... CGACGTCGCGCGCCAGCGTATGGCGGGTGATT 4712 29 100.0 32 ............................. TCCGCGGACGGATACGACATCGATTCACTGCT 4773 29 96.6 32 ............................C CGCATCGGAGATCGAGGTCGCGGTGTCCTGTG 4834 29 93.1 32 .......T....................G AACGGTGCCCGGTGGGGTGGCCGGTTGCAGAA 4895 29 86.2 32 ...........A.G..........T...G GTCAACGGGCCGTGGCCGGGCCGGACCTTGCG 4956 29 82.8 32 .....T.....A.G............T.G CGCTGCACTCGTATGACGACTCGGGTGTGTTG 5017 28 75.9 0 ...A.T....T..T...-.....C....G | ========== ====== ====== ====== ============================= ======================================================================================================================== ================== 11 29 91.6 41 GTCGGCCCCGCGCACGCGGGGATGGTCCT # Left flank : TGCGTCCTTGAGAGGAGGTGAAAACCACGTGTCCAAGAGAAGGAGGAAAGCTAGGAGGAGAACCTCGGCAGTAGTAGGCGTTACCGCCGAGGTCCCCCTCCGCTACGCAAACACCCCGATCATCTGGGCTTTTCTTGCGATGATGATGCACGGTCTGCTCTAACTCTGAGCGCGGGTCCACTGTCCTACCAGTGGCCCGCGCTCTTGTGTTTGCGTGTATCTAATGTATCTATAAGGGTGGGTACTAGCAATCATTATTCCCTTATTTACGGGTATCAGTAGGAACGGAGTAAGGAAATAAGGAGGAGAAGTATGGCTACGACCAAACGATTCTGACGGTTAGCATCGTTGTTTTCATCGCGTGAGCAGGTTCGCGCGAGCCAGTTCGTTACGAACTGCCGAGGTCAGGAACGGATTGCCCCTGGTGCTGGCTGCACCAATCGGCGTGCGAACACCACCGTGCCGCCGACCGTGAACCGCACCGCCCGCGCCTGGATCTC # Right flank : GGCTGGCTCAGCAGCGTAGTGTCTTGACAAAGGCTACTGAGCAGGTCATATTCGAACCACTCGAATACGTAATCGTGGCACGGGTGCCGTGAGAAGGGGTTCAAGTCCCCCTTCGCCCACCAGAACGAATGAGGGCCGGAGATCTTCTCCGGCCCTCATTCTTTTCGGTATCGGATCGGGTTCCCCTGTCGGATCGGGGTTCCCGGGGCGGTCCGGTTCCGGTTCGGCGTGTCCCGGTTGTCGAATCGGTGGGTTTGTCGGGAATTTCACATCTGTGGCCACTTTTTGCCATCCGGCAGACCGTGCGGTCTGTATCGGTGCTGGGTCAGGTGTCGTGGAGTCAGGTCAGGTATTCGGCGAAGCAATTCACGTAGGACGAGAGGGTCGGTGCCTCGGCCATGGTGTCCGCGTGGTGGTGGACCTGGCGATAACGGGCGAGGCGGTCGGTTCGGTATGCGGCCGAGGCCGATGTGATGTCGGTGTGGGTGAGGTGGTCGCTC # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-0.79, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //