Array 1 16437-19525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWP01000002.1 Campylobacter sp. RM15925 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 16437 37 100.0 38 ..................................... GTTTGTTCCCATATCAAGCAGTATAGGTCTTCACCTAT 16512 37 100.0 39 ..................................... AAGATAAACGCGATTAATAACTCAAGCATTTTTTTCTCC 16588 37 100.0 36 ..................................... AGTACTAACTCAACCATATATTCCCCTTTTCTATAA 16661 37 100.0 40 ..................................... GATCCTTGGGACGAGATCAAGGATGGGCTGGAAGTCGGCG 16738 37 100.0 41 ..................................... AAACAAGTTCAACCATTTATTACTCCTTTACTAGCTTATGT 16816 37 100.0 37 ..................................... AATAACTCAAGCATTTTTTCTCCTTTATTAACTTTGC 16890 37 100.0 42 ..................................... GCTAATCGCAAACTTGTTGATTTTCTCTTTACCAGAGCCTGT 16969 37 100.0 35 ..................................... AGTCGTTAGTTAGTGCATATATTTCTCTCATTTGA 17041 37 100.0 37 ..................................... GATAGCATCGTTTAAGCTATCTATCCATTGTTGTCCA 17115 37 100.0 39 ..................................... TATTCACACTAAGACCTCCCTATAAGCTAAAGCAGGATT 17191 37 100.0 39 ..................................... TATAATTTCTAGCATTTCATAACTCCTTTAATTGTAGTT 17267 37 100.0 42 ..................................... ATGCTAATAACCATTCCATCTTATGCTCCTTGTTGTAGTAGT 17346 37 100.0 38 ..................................... CATTTTGTTCTCCTTATGGTTTATTTAGACATCCTTAT 17421 37 100.0 41 ..................................... ACATTACAATTCCTTTACTTGTAGTTTCTTTAAAGCTTTAT 17499 37 100.0 40 ..................................... GAAGTCATTCAACTTCTTCTTGCCTGGACCAGTTACTGCC 17576 37 100.0 38 ..................................... CAACTATTTTCTCTCCGTTTGTAAGCAATACGCTAACC 17651 37 100.0 38 ..................................... CTAAGTAGTGTTAGCTTCACCTCTTTCTTGTCTGTTCG 17726 37 100.0 41 ..................................... AATTTTTCACTAAACTTTTGCTCTATATCCCACTGATTCAT 17804 37 100.0 40 ..................................... ATCAAATACCTTTGGAGCTTTCGCTCACCTTTCTTACTCC 17881 37 100.0 38 ..................................... TCAGCCACATTGTTGATAAACCCTTCACCTAGAAATGT 17956 37 97.3 39 ....G................................ CCGTCTCTTGATCTAATGTGACCAACAACTATTTTCTCT 18032 37 100.0 38 ..................................... AGGAAAATAAAACCAACCAACAATTCTAACATACTAAT 18107 37 100.0 43 ..................................... TAATCGAGTACCTACATACTCAACTAGCTTTGATCCATATTGT 18187 37 100.0 38 ..................................... GTTGTAAAACTGTTCAGCTTCCTCTTTCCTTCCCCTGT 18262 37 100.0 38 ..................................... CACCACATACAGCTATGTTTATTAAACCTGACAGACAT 18337 37 100.0 37 ..................................... ATCTGGTAAGGTGTTTAACCATGCTTTACCATATTTG 18411 37 100.0 42 ..................................... ACTAGCTCCATTGTTCTCTACTCCTCTTCGTAATCTATTTAC 18490 37 100.0 36 ..................................... CGCTTGTTGTAAGCACCTTTACCTCTTTGTTTACGA 18563 37 100.0 44 ..................................... ACTTTCATTACAGCTTGTTGCAATATAGCTAACGAGCCTGGTTC 18644 37 100.0 37 ..................................... GCGAGATAATACTTCATCTCAAACAGTTTAGCTTTGA 18718 37 100.0 38 ..................................... TAGAAGTCATAGCCTGAAGCAAAGTCATTATTTAATAA 18793 37 100.0 38 ..................................... GCCCTCTTTGCCGCCGCTTGCATCTATGGCTTGTTTAT 18868 37 100.0 41 ..................................... ATCCATGATTTCTTCCAAAGTTTGAACCGTAAATTGGTTCA 18946 37 100.0 36 ..................................... GCTAGCATATCCATTAGACAAAGTTCCCGTCATTAA 19019 37 100.0 42 ..................................... CCTTCAAAATCGTCGTAGAGATGGCAAAGATTTACCACCTTA 19098 37 100.0 36 ..................................... GCTAGCATATCCATTAGACAAAGTTCCCGTCATTAA 19171 37 100.0 38 ..................................... ATTTGAGTAGACACTAACTCTTTTGAGTGTGTCCATAT 19246 37 100.0 50 ..................................... TTTGCCTTTTCCTCAAAAGTCCTAATTTCGACTTCGGGATAACGAGATAG 19333 37 100.0 37 ..................................... TAAAATATTCTTTCTACTATATCTGTTCTCAATCTCT 19407 37 100.0 45 ..................................... TTTATTCTCCTTGTGTTGAAATGTTTTGATACCTTATGGCTTAGA 19489 37 89.2 0 ................................TT.TA | ========== ====== ====== ====== ===================================== ================================================== ================== 41 37 99.7 39 ATTTATACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TTGGTAAAAGTTTTGAACTTTGTGATCATGTTGATATTTTTGAAGCAAAAGATTTATTTGTATAGTAAATAGTCTAGATTTAATTTTTTATTTGCGAACTTTTTTAGCTTAAATTCGAACTTTTTTAGCTAGAATTATCAAAATTTAGTTCGCAAAAGCGGATTTGCATAAATATATTCACCTGTATTTGCGAACTTTTATTTATACTTAAGATTTAAGTGTCCTATTTTAGGAAGTTTTGAAACTTAGATATTTATTAAATTTCTCAAATCTGAATATTTTAAAAAATTTGAAATAGATTTGCGAACTTTTTTAAGCTATAAAAATCCTAAATTTAGGAGTTCTTTTACTTATTATTGTCAAAATTCATAAGTTGTATTTTTTAAATAGTCATACATTTGCGAACTTTTTAAATGATATAAAGATTTTTCAATACTTTAAACTCATTTTTCTTAAGTAAATTTATTAGTTTTAACTTTGTAAATGTAGTATTTTGGGCT # Right flank : ATGTTTAAATTAATTGATCAATATCAACATGTATTATTCATCTTAACTAGTCTACGTATAGACTTTTTGCTACAATAGACACTATATGTCCTATGATCTATATATAATTATTGTAAAAAACAAAATAGTTTGAAGTGATGCATGAAGGTATCTACATACCGCGATTATTATATGAATATTTTAGAAAGATTAAAAAAATGAAAAGAAATATAAATAGAGACGAAAATATAATAGCATCAATTAATAGAAATATAAATTTAAACACTCAAATAGTGAAATCTAAAAAAATATATTCCAGAAAGCGAAAGCATAAGCATTTGGGGTACTAAATGATGATTTTTATTATACATCACCGATTTTATTCTGATATGTTCTAATGTCTCTTAAAATTTCGTCTCTAAGCTCTATAGGTTCAATGACCTCTATAGAAGGTATCCATTTTTTGATAAATGGTTTAATTTCTTGAAATTGAGTAACCCTATAGCAAACAATCTTGCTTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //