Array 1 153840-153140 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLF01000003.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain 481-85 NODE_3_length_335074_cov_4.10467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153839 29 100.0 32 ............................. GTTTAATCAGCGTAGAGGGTGTATTGCGATGA 153778 29 96.6 32 ............................A AATATCAGATTGTAAACGTTCAGCGCTGGCGC 153717 29 100.0 32 ............................. GTATTTGAAACAGATGCGTGTATGATGCGGTC 153656 29 100.0 32 ............................. GAGTGGTGGACGCTGAATATCAAACAATTGAT 153595 29 100.0 32 ............................. CACAAATTTTTATTTGATTGCAAACATTTCGC 153534 29 100.0 32 ............................. AATTGCCTCACGCTATCTCATACGCACACGAA 153473 29 100.0 32 ............................. TAACGGCGGGGGATTTTGGCGGTTGGGTTGAG 153412 29 100.0 32 ............................. GTTCCCACGCGTAGCACGCCAATTTACGTGGT 153351 29 96.6 32 ...........................T. GTTATTGCATGGCGTGTCCTTGATGCTCAATT 153290 29 100.0 32 ............................. ATATGAATGGGGTTTACGGGAAAAATATACAT 153229 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 153168 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACGGATAAGCGGCTTTTTTCCCAGCAGAAATCTATTTCATCGACTAAAGGGCGTAACTGCCCATCAATGCCTTTTCTGGCGAGGTAAACATCCACGCTTTCTTCGCCCAGACGGGTAGAAAATTCTCGGTCTTTATCCCATAAAAAGTCGCTGGATTCCCTGTCGTAGCCGAGATCGTGACGGAGCAGATTTTGGGCGGCGACCGAACGCTGGCTCAGTACTTTGCCAAAAGCAATATCGGAAAACGTTTGCAGGTCTGCCGGCGCAGCTATCTTTTGCTCGTAGACGCCATCAACCAGATCTCTGGCATTATCCGGCATGCGGATTTCACCATACTGACGCAGCAACGCCTGGGTGCGCCACAGGCAGGCGTGGTCGGCATAAACAAAGCCGGTTCCTTTTAGCTCTTGCCCTAACCAGCCCTCTTCTGCGTGCTCTTGCCATTCCGGGGCCAGAATATGCAATATGGGCGGCTGGCGACCGTCGGGCAGCGCGGATT # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLF01000061.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain 481-85 NODE_61_length_579_cov_4.18648, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. AATTGCCTCACGCTATCTCATACGCACACGAA 63 29 100.0 32 ............................. CTGGTCAGGGCGCAAAAGCAGGAGGTATTGGC 124 29 100.0 32 ............................. TACTGGCCTCGTGCAGAGCGTCTGGATAATGC 185 29 100.0 32 ............................. GTGATTTAGTTAAATTGTGGATTGAAAAATTT 246 29 96.6 32 ............................T AGCGTGAGGCAATTCTTAGCGTTGAACTCTTC 307 29 100.0 32 ............................. CCAACCGAATGGGCCATCCAAAGGTTAAGCGC 368 29 100.0 32 ............................. TCAATTGGCTTTGGTGATGTCGTGATGTGGAA 429 29 100.0 32 ............................. CCAATCTTCTTTAGCGCTTCGTCCATCTTTTC 490 29 100.0 32 ............................. AATTGCCTCACGCTATCTCATACGCACACGAA 551 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : AGAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //