Array 1 8641-11516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEEN01000016.1 Streptococcus suis strain LS5U, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8641 32 100.0 35 ................................ TGATGACCTTGAGGATATTTTGAGTCAGAAAAGGC 8708 32 100.0 34 ................................ TGAGCAACTATATATCAAGGCTCTTTGCAACCAA 8774 32 100.0 33 ................................ TGATGTCATTGATGGTATACATGACCATAGACT 8839 32 100.0 34 ................................ CCAATCATTAAAGGATAATATAGATTATTACTTA 8905 32 100.0 35 ................................ TTTTGTCTGGTGTTGGTTTTCTTGTGGAGAAAACC 8972 32 100.0 35 ................................ TTTATTGGTGGTAAATACTGAAAAAGGTATCTACA 9039 32 100.0 35 ................................ TTAGTGCCTAATGACACTATAGGACTAGGTAGGAA 9106 32 100.0 33 ................................ TGGTCTGTTTACTGTACTGTATATATCTTTCTT 9171 32 100.0 34 ................................ TTTAAACATCTCCAACATATGTTGGATAGCTTTT 9237 32 100.0 33 ................................ CTGAAAATCGTGATTTTTCGGAAAGATGTAGGC 9302 32 100.0 34 ................................ GGTGGTTCGATAACCGTTGACGGAATTAAATATG 9368 32 100.0 34 ................................ CATTGTACTCAAAAGTATTATCATCTAACCAAGA 9434 32 100.0 33 ................................ AGTCTTAGCTGCTTTGATGACCTCAGGAGAGCG 9499 32 100.0 35 ................................ AGTAACCCGTTTTTGAACTGCGTCATAGTCAGAGC 9566 32 100.0 33 ................................ AGGTCAATTTTGACAGAAACGCTAGTCCCCATC 9631 32 100.0 33 ................................ TGAGAGCTGGCGTGCAAGAGCTTTACCTGCCTC 9696 32 100.0 34 ................................ TTTGGCTTTTTTGTAAAAATCTTTCTTAATTTCA 9762 32 100.0 34 ................................ AGAAATACGCATGAGAACTATACCTCAATGAACA 9828 32 100.0 35 ................................ TAAGTTTAGTCCCAGGTTTCTTGTCGTCAATGAAA 9895 32 100.0 33 ................................ AATACTTGAGGGCTTGATTTCTTCGTGAAATAG 9960 32 100.0 35 ................................ TCGTGTACGGAAGAGGAGGATGCGAAACAACTCAC 10027 32 100.0 34 ................................ TTCTTGTGACGGATTTTAAAACCTCTATTTTCTC 10093 32 100.0 34 ................................ ACCGACGAAAAAACAGGTAATCAAGTTGCAGGGG 10159 32 100.0 34 ................................ AATCAATTAGCGCAGGGGATAGAACGTATAACCA 10225 32 100.0 33 ................................ AATTTTGGTTAACGTTCGGCACTGCGACAATTC 10290 32 100.0 34 ................................ TGGGGTCCCTAATGCTGGGATTATGAATGACCAA 10356 32 100.0 33 ................................ ATCTTTCAGGAACTCGTTTTCCTTGAGTAACTG 10421 32 100.0 35 ................................ TACCGAGATAGAGCCTGTACAACCCAAACGCTCCG 10488 32 100.0 35 ................................ ATCATTGATTAATAATTATCTTGATGAAACAGAAA 10555 32 100.0 35 ................................ ACTATTTCAGAAAATTTAACAAATGCAATACAAAT 10622 32 100.0 36 ................................ ATCATTTCCTCCTAAAACGGTAAGCCATCGTCAGAA 10690 32 100.0 34 ................................ TATCCTTTTGAGATAAAGCAGTCGGTTTTCCATC 10756 32 100.0 33 ................................ ACTATTTCAGAAAATTTAACAAATGCTATACAA 10821 32 100.0 34 ................................ ATTTTCGCCGACCAAATTACGCTTAAATAGATAA 10887 32 100.0 34 ................................ CGTCGTTGCAAGTCGTCCAAGTTAGTTGGCACTG 10953 32 100.0 36 ................................ TGGTTTAGTTGCTTCGTCCAATTGCTGAGTCAAGTC 11021 32 100.0 33 ................................ TTTTTGATTAGCTAGTAATTCTTGGTAAGCCTG 11086 32 100.0 36 ................................ CAAATGACACAGTTGATAAAGTCAGCCTCACGGTCG 11154 32 90.6 34 .........C...C..........G....... TGATTTAGGTGGTGTATATAAAACTACTAAAGAT 11220 32 90.6 34 .........C...C..........G....... CCCGAACAAGTAAGACACGATTGACAACCTCCTC 11286 32 84.4 34 .......T..T..C.A........G....... ATTATACAGGTGGTTTACAGGTTCATACAGGAAC 11352 32 84.4 34 .......T..T..C.A........G....... TCCTGTTAAAATAGTTTTGTTTGTAGAGGATAAA 11418 32 84.4 35 .......T..T..C.A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGT 11485 32 78.1 0 .......T..T..C.A..A.....G.....G. | ========== ====== ====== ====== ================================ ==================================== ================== 44 32 98.0 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTATTCGAGGCGAGTTGGACAATTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAACAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAACATATGAAAAGTAGTGAAAATAGAGTGAATTTGTGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : TAACGTATCGACAGACTAGCTGCTCGGACGGACCGGTCGTACTCTTTGCGTATACGTAGGTTGAAGTTGTTTTTTGCTTAACACAGTATATCTGGCATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGTACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACCTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //